Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08890

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_08865 and OKGIIK_08870 overlap by 4 nucleotidesOKGIIK_08870 and OKGIIK_08875 overlap by 4 nucleotidesOKGIIK_08875 and OKGIIK_08880 overlap by 4 nucleotidesOKGIIK_08880 and OKGIIK_08885 are separated by 11 nucleotidesOKGIIK_08885 and OKGIIK_08890 are separated by 44 nucleotidesOKGIIK_08890 and OKGIIK_08895 overlap by 4 nucleotidesOKGIIK_08895 and OKGIIK_08900 overlap by 4 nucleotides OKGIIK_08865: OKGIIK_08865 - hypothetical protein, at 1,914,226 to 1,914,627 _08865 OKGIIK_08870: OKGIIK_08870 - hypothetical protein, at 1,914,624 to 1,914,887 _08870 OKGIIK_08875: OKGIIK_08875 - hypothetical protein, at 1,914,884 to 1,915,153 _08875 OKGIIK_08880: OKGIIK_08880 - hypothetical protein, at 1,915,150 to 1,915,389 _08880 OKGIIK_08885: OKGIIK_08885 - hypothetical protein, at 1,915,401 to 1,915,550 _08885 OKGIIK_08890: OKGIIK_08890 - DUF1351 domain-containing protein, at 1,915,595 to 1,916,752 _08890 OKGIIK_08895: OKGIIK_08895 - hypothetical protein, at 1,916,749 to 1,916,934 _08895 OKGIIK_08900: OKGIIK_08900 - YqaJ domain-containing protein, at 1,916,931 to 1,917,773 _08900 Position (kb) 1915 1916 1917Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1914.673 kb on - strand, within OKGIIK_08870at 1914.673 kb on - strand, within OKGIIK_08870at 1914.675 kb on + strand, within OKGIIK_08870at 1914.675 kb on + strand, within OKGIIK_08870at 1914.675 kb on + strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.676 kb on - strand, within OKGIIK_08870at 1914.751 kb on - strand, within OKGIIK_08870at 1914.779 kb on + strand, within OKGIIK_08870at 1914.780 kb on - strand, within OKGIIK_08870at 1914.823 kb on - strand, within OKGIIK_08870at 1914.835 kb on - strand, within OKGIIK_08870at 1914.835 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1914.841 kb on - strand, within OKGIIK_08870at 1915.134 kb on - strandat 1915.134 kb on - strandat 1915.134 kb on - strandat 1915.134 kb on - strandat 1915.231 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.268 kb on - strand, within OKGIIK_08880at 1915.649 kb on + strandat 1915.649 kb on + strandat 1915.706 kb on + strandat 1915.707 kb on - strandat 1915.707 kb on - strandat 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.159 kb on + strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.160 kb on - strand, within OKGIIK_08890at 1916.622 kb on + strand, within OKGIIK_08890at 1916.623 kb on - strand, within OKGIIK_08890at 1916.623 kb on - strand, within OKGIIK_08890at 1916.773 kb on + strand, within OKGIIK_08895at 1916.773 kb on + strand, within OKGIIK_08895at 1916.774 kb on - strand, within OKGIIK_08895at 1917.036 kb on + strand, within OKGIIK_08900at 1917.036 kb on + strand, within OKGIIK_08900at 1917.037 kb on - strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.180 kb on + strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.181 kb on - strand, within OKGIIK_08900at 1917.321 kb on + strand, within OKGIIK_08900at 1917.321 kb on + strand, within OKGIIK_08900at 1917.322 kb on - strand, within OKGIIK_08900at 1917.375 kb on + strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.376 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.481 kb on - strand, within OKGIIK_08900at 1917.541 kb on - strand, within OKGIIK_08900

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,914,673 - OKGIIK_08870 0.19 -0.8
1,914,673 - OKGIIK_08870 0.19 -1.0
1,914,675 + OKGIIK_08870 0.19 -1.5
1,914,675 + OKGIIK_08870 0.19 -0.5
1,914,675 + OKGIIK_08870 0.19 -0.3
1,914,676 - OKGIIK_08870 0.20 +1.9
1,914,676 - OKGIIK_08870 0.20 +1.1
1,914,676 - OKGIIK_08870 0.20 -0.0
1,914,676 - OKGIIK_08870 0.20 -1.0
1,914,751 - OKGIIK_08870 0.48 -1.9
1,914,779 + OKGIIK_08870 0.59 -0.5
1,914,780 - OKGIIK_08870 0.59 +0.6
1,914,823 - OKGIIK_08870 0.75 -0.5
1,914,835 - OKGIIK_08870 0.80 +0.6
1,914,835 - OKGIIK_08870 0.80 -0.2
1,914,841 - OKGIIK_08870 0.82 -1.2
1,914,841 - OKGIIK_08870 0.82 -2.0
1,914,841 - OKGIIK_08870 0.82 -1.2
1,914,841 - OKGIIK_08870 0.82 -1.3
1,914,841 - OKGIIK_08870 0.82 -0.7
1,915,134 - +0.1
1,915,134 - -1.7
1,915,134 - -1.5
1,915,134 - +1.1
1,915,231 - OKGIIK_08880 0.34 +0.5
1,915,268 - OKGIIK_08880 0.49 -0.5
1,915,268 - OKGIIK_08880 0.49 +0.4
1,915,268 - OKGIIK_08880 0.49 -0.7
1,915,268 - OKGIIK_08880 0.49 -0.0
1,915,268 - OKGIIK_08880 0.49 +1.7
1,915,649 + -1.4
1,915,649 + +1.0
1,915,706 + +1.1
1,915,707 - +1.1
1,915,707 - -0.2
1,916,159 + OKGIIK_08890 0.49 -2.0
1,916,159 + OKGIIK_08890 0.49 -1.5
1,916,159 + OKGIIK_08890 0.49 -1.5
1,916,159 + OKGIIK_08890 0.49 -1.5
1,916,159 + OKGIIK_08890 0.49 +1.5
1,916,159 + OKGIIK_08890 0.49 -1.9
1,916,160 - OKGIIK_08890 0.49 -2.0
1,916,160 - OKGIIK_08890 0.49 -0.9
1,916,160 - OKGIIK_08890 0.49 -1.2
1,916,160 - OKGIIK_08890 0.49 -1.9
1,916,160 - OKGIIK_08890 0.49 +0.3
1,916,160 - OKGIIK_08890 0.49 -0.5
1,916,160 - OKGIIK_08890 0.49 +1.1
1,916,160 - OKGIIK_08890 0.49 +0.9
1,916,160 - OKGIIK_08890 0.49 -1.1
1,916,160 - OKGIIK_08890 0.49 +1.1
1,916,622 + OKGIIK_08890 0.89 -1.6
1,916,623 - OKGIIK_08890 0.89 -1.3
1,916,623 - OKGIIK_08890 0.89 -0.4
1,916,773 + OKGIIK_08895 0.13 -1.7
1,916,773 + OKGIIK_08895 0.13 -0.5
1,916,774 - OKGIIK_08895 0.13 +0.1
1,917,036 + OKGIIK_08900 0.12 -1.2
1,917,036 + OKGIIK_08900 0.12 -2.2
1,917,037 - OKGIIK_08900 0.13 -1.2
1,917,180 + OKGIIK_08900 0.30 -2.2
1,917,180 + OKGIIK_08900 0.30 -1.9
1,917,180 + OKGIIK_08900 0.30 -0.9
1,917,180 + OKGIIK_08900 0.30 -0.9
1,917,180 + OKGIIK_08900 0.30 +0.5
1,917,181 - OKGIIK_08900 0.30 -2.2
1,917,181 - OKGIIK_08900 0.30 -0.3
1,917,181 - OKGIIK_08900 0.30 -0.7
1,917,181 - OKGIIK_08900 0.30 -0.9
1,917,181 - OKGIIK_08900 0.30 -0.2
1,917,321 + OKGIIK_08900 0.46 -0.9
1,917,321 + OKGIIK_08900 0.46 -0.5
1,917,322 - OKGIIK_08900 0.46 +0.9
1,917,375 + OKGIIK_08900 0.53 -1.2
1,917,376 - OKGIIK_08900 0.53 -0.6
1,917,376 - OKGIIK_08900 0.53 -2.6
1,917,376 - OKGIIK_08900 0.53 -0.7
1,917,376 - OKGIIK_08900 0.53 -1.7
1,917,481 - OKGIIK_08900 0.65 +0.8
1,917,481 - OKGIIK_08900 0.65 -1.7
1,917,481 - OKGIIK_08900 0.65 +0.1
1,917,481 - OKGIIK_08900 0.65 -3.0
1,917,481 - OKGIIK_08900 0.65 -0.6
1,917,541 - OKGIIK_08900 0.72 -0.7

Or see this region's nucleotide sequence