Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00340 and OKGIIK_00345 are separated by 208 nucleotides OKGIIK_00345 and OKGIIK_00350 are separated by 93 nucleotides OKGIIK_00350 and OKGIIK_00355 are separated by 95 nucleotides
OKGIIK_00340: OKGIIK_00340 - Histidine kinase, at 84,179 to 85,570
_00340
OKGIIK_00345: OKGIIK_00345 - GCN5 family acetyltransferase, at 85,779 to 86,294
_00345
OKGIIK_00350: OKGIIK_00350 - TonB-dependent receptor, at 86,388 to 86,609
_00350
OKGIIK_00355: OKGIIK_00355 - Alpha/beta hydrolase, at 86,705 to 87,412
_00355
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.888 kb on + strand, within OKGIIK_00340 at 84.888 kb on + strand, within OKGIIK_00340 at 84.888 kb on + strand, within OKGIIK_00340 at 84.888 kb on + strand, within OKGIIK_00340 at 84.888 kb on + strand, within OKGIIK_00340 at 85.168 kb on + strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.169 kb on - strand, within OKGIIK_00340 at 85.174 kb on - strand, within OKGIIK_00340 at 85.176 kb on - strand, within OKGIIK_00340 at 85.176 kb on - strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.303 kb on + strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.304 kb on - strand, within OKGIIK_00340 at 85.314 kb on + strand, within OKGIIK_00340 at 85.314 kb on + strand, within OKGIIK_00340 at 85.314 kb on + strand, within OKGIIK_00340 at 85.314 kb on + strand, within OKGIIK_00340 at 85.314 kb on + strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.315 kb on - strand, within OKGIIK_00340 at 85.355 kb on + strand, within OKGIIK_00340 at 85.355 kb on + strand, within OKGIIK_00340 at 85.355 kb on + strand, within OKGIIK_00340 at 85.356 kb on - strand, within OKGIIK_00340 at 85.356 kb on - strand, within OKGIIK_00340 at 85.356 kb on - strand, within OKGIIK_00340 at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.512 kb on + strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.513 kb on - strand at 85.968 kb on + strand, within OKGIIK_00345 at 85.969 kb on - strand, within OKGIIK_00345 at 85.969 kb on - strand, within OKGIIK_00345 at 85.969 kb on - strand, within OKGIIK_00345 at 85.969 kb on - strand, within OKGIIK_00345 at 85.983 kb on + strand, within OKGIIK_00345 at 85.983 kb on + strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 85.984 kb on - strand, within OKGIIK_00345 at 86.019 kb on + strand, within OKGIIK_00345 at 86.019 kb on + strand, within OKGIIK_00345 at 86.019 kb on + strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.020 kb on - strand, within OKGIIK_00345 at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.351 kb on + strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.352 kb on - strand at 86.427 kb on + strand, within OKGIIK_00350 at 86.428 kb on - strand, within OKGIIK_00350 at 86.439 kb on + strand, within OKGIIK_00350 at 86.439 kb on + strand, within OKGIIK_00350 at 86.439 kb on + strand, within OKGIIK_00350 at 86.499 kb on + strand, within OKGIIK_00350 at 86.499 kb on + strand, within OKGIIK_00350 at 86.500 kb on - strand, within OKGIIK_00350 at 86.526 kb on + strand, within OKGIIK_00350 at 86.526 kb on + strand, within OKGIIK_00350 at 86.526 kb on + strand, within OKGIIK_00350 at 86.526 kb on + strand, within OKGIIK_00350 at 86.527 kb on - strand, within OKGIIK_00350 at 86.527 kb on - strand, within OKGIIK_00350 at 86.527 kb on - strand, within OKGIIK_00350 at 86.527 kb on - strand, within OKGIIK_00350 at 86.527 kb on - strand, within OKGIIK_00350 at 86.671 kb on + strand at 86.671 kb on + strand at 86.671 kb on + strand at 86.671 kb on + strand at 86.671 kb on + strand at 86.671 kb on + strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.672 kb on - strand at 86.678 kb on + strand at 86.679 kb on - strand at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.918 kb on + strand, within OKGIIK_00355 at 86.999 kb on - strand, within OKGIIK_00355 at 86.999 kb on - strand, within OKGIIK_00355
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 84,888 + OKGIIK_00340 0.51 -0.4 84,888 + OKGIIK_00340 0.51 -0.2 84,888 + OKGIIK_00340 0.51 -1.6 84,888 + OKGIIK_00340 0.51 -0.1 84,888 + OKGIIK_00340 0.51 -1.0 85,168 + OKGIIK_00340 0.71 +0.4 85,169 - OKGIIK_00340 0.71 -0.9 85,169 - OKGIIK_00340 0.71 +0.4 85,169 - OKGIIK_00340 0.71 -1.5 85,169 - OKGIIK_00340 0.71 -0.6 85,169 - OKGIIK_00340 0.71 -0.6 85,169 - OKGIIK_00340 0.71 +0.4 85,174 - OKGIIK_00340 0.71 -1.6 85,176 - OKGIIK_00340 0.72 +0.0 85,176 - OKGIIK_00340 0.72 -0.1 85,303 + OKGIIK_00340 0.81 -1.9 85,303 + OKGIIK_00340 0.81 +1.0 85,303 + OKGIIK_00340 0.81 -1.4 85,303 + OKGIIK_00340 0.81 -1.6 85,303 + OKGIIK_00340 0.81 +1.0 85,303 + OKGIIK_00340 0.81 -2.9 85,304 - OKGIIK_00340 0.81 -1.4 85,304 - OKGIIK_00340 0.81 +0.2 85,304 - OKGIIK_00340 0.81 +1.3 85,304 - OKGIIK_00340 0.81 -0.2 85,304 - OKGIIK_00340 0.81 -0.7 85,304 - OKGIIK_00340 0.81 -1.4 85,314 + OKGIIK_00340 0.82 -0.6 85,314 + OKGIIK_00340 0.82 +0.4 85,314 + OKGIIK_00340 0.82 +0.6 85,314 + OKGIIK_00340 0.82 -2.0 85,314 + OKGIIK_00340 0.82 -0.6 85,315 - OKGIIK_00340 0.82 -3.0 85,315 - OKGIIK_00340 0.82 -0.0 85,315 - OKGIIK_00340 0.82 -3.0 85,315 - OKGIIK_00340 0.82 +0.1 85,315 - OKGIIK_00340 0.82 -0.9 85,315 - OKGIIK_00340 0.82 -0.4 85,315 - OKGIIK_00340 0.82 +0.5 85,355 + OKGIIK_00340 0.84 -0.9 85,355 + OKGIIK_00340 0.84 -0.4 85,355 + OKGIIK_00340 0.84 +0.4 85,356 - OKGIIK_00340 0.85 -0.6 85,356 - OKGIIK_00340 0.85 +1.2 85,356 - OKGIIK_00340 0.85 -0.6 85,512 + +2.5 85,512 + -1.4 85,512 + +1.3 85,512 + -2.5 85,512 + -0.6 85,512 + -1.9 85,512 + +0.6 85,512 + -0.0 85,513 - +1.1 85,513 - -1.7 85,513 - -0.6 85,513 - -1.0 85,513 - -1.5 85,513 - -0.5 85,968 + OKGIIK_00345 0.37 -1.8 85,969 - OKGIIK_00345 0.37 -3.4 85,969 - OKGIIK_00345 0.37 -3.0 85,969 - OKGIIK_00345 0.37 -0.0 85,969 - OKGIIK_00345 0.37 -0.4 85,983 + OKGIIK_00345 0.40 -0.8 85,983 + OKGIIK_00345 0.40 -2.4 85,984 - OKGIIK_00345 0.40 +1.2 85,984 - OKGIIK_00345 0.40 -1.0 85,984 - OKGIIK_00345 0.40 -0.5 85,984 - OKGIIK_00345 0.40 -2.0 85,984 - OKGIIK_00345 0.40 -2.2 85,984 - OKGIIK_00345 0.40 -1.7 85,984 - OKGIIK_00345 0.40 -1.9 86,019 + OKGIIK_00345 0.47 +1.6 86,019 + OKGIIK_00345 0.47 -0.3 86,019 + OKGIIK_00345 0.47 -0.4 86,020 - OKGIIK_00345 0.47 -3.7 86,020 - OKGIIK_00345 0.47 -1.4 86,020 - OKGIIK_00345 0.47 -1.9 86,020 - OKGIIK_00345 0.47 -0.3 86,020 - OKGIIK_00345 0.47 -1.6 86,020 - OKGIIK_00345 0.47 +0.3 86,020 - OKGIIK_00345 0.47 -1.2 86,351 + +0.4 86,351 + -1.3 86,351 + -0.5 86,351 + -0.2 86,351 + +0.6 86,351 + -1.9 86,351 + -1.4 86,351 + +0.8 86,351 + -1.0 86,351 + -0.6 86,351 + +1.0 86,351 + -1.4 86,351 + -0.8 86,351 + +1.0 86,351 + -1.7 86,351 + -0.1 86,351 + -0.0 86,351 + +0.6 86,351 + -1.0 86,351 + -0.0 86,351 + +1.0 86,351 + -0.8 86,351 + -1.7 86,351 + +0.4 86,351 + +0.4 86,351 + -1.6 86,351 + +0.5 86,352 - +2.2 86,352 - -0.0 86,352 - +0.3 86,352 - -1.0 86,352 - -0.9 86,352 - -1.4 86,352 - -2.0 86,352 - +2.5 86,352 - -1.4 86,352 - +0.5 86,352 - -1.9 86,352 - -1.5 86,352 - +0.6 86,352 - -1.4 86,352 - -2.6 86,352 - +0.4 86,352 - -1.7 86,352 - +1.0 86,352 - -2.4 86,352 - -0.2 86,352 - -1.2 86,352 - -2.5 86,352 - -1.0 86,352 - +1.2 86,427 + OKGIIK_00350 0.18 -0.0 86,428 - OKGIIK_00350 0.18 -1.0 86,439 + OKGIIK_00350 0.23 -1.1 86,439 + OKGIIK_00350 0.23 -1.0 86,439 + OKGIIK_00350 0.23 +2.3 86,499 + OKGIIK_00350 0.50 -0.5 86,499 + OKGIIK_00350 0.50 +1.0 86,500 - OKGIIK_00350 0.50 -0.3 86,526 + OKGIIK_00350 0.62 -0.6 86,526 + OKGIIK_00350 0.62 +1.4 86,526 + OKGIIK_00350 0.62 -1.4 86,526 + OKGIIK_00350 0.62 +0.1 86,527 - OKGIIK_00350 0.63 -0.0 86,527 - OKGIIK_00350 0.63 +0.4 86,527 - OKGIIK_00350 0.63 -1.1 86,527 - OKGIIK_00350 0.63 +0.5 86,527 - OKGIIK_00350 0.63 +1.8 86,671 + -0.0 86,671 + -1.0 86,671 + -1.0 86,671 + +1.0 86,671 + +1.0 86,671 + -1.0 86,672 - -0.6 86,672 - +0.0 86,672 - -0.2 86,672 - -0.8 86,672 - -1.9 86,672 - -0.4 86,672 - +0.8 86,672 - -1.4 86,678 + -0.9 86,679 - +0.1 86,918 + OKGIIK_00355 0.30 +0.1 86,918 + OKGIIK_00355 0.30 -2.0 86,918 + OKGIIK_00355 0.30 -0.6 86,918 + OKGIIK_00355 0.30 -1.9 86,918 + OKGIIK_00355 0.30 -0.2 86,918 + OKGIIK_00355 0.30 -0.0 86,918 + OKGIIK_00355 0.30 +0.5 86,999 - OKGIIK_00355 0.42 -0.6 86,999 - OKGIIK_00355 0.42 +0.2
Or see this region's nucleotide sequence