Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrA and OKGIIK_03985 are separated by 149 nucleotides OKGIIK_03985 and rplU are separated by 110 nucleotides rplU and rpmA are separated by 19 nucleotides rpmA and obgE are separated by 178 nucleotides
OKGIIK_03980: uvrA - excinuclease ABC subunit UvrA, at 870,725 to 873,688
uvrA
OKGIIK_03985: OKGIIK_03985 - DUF2059 domain-containing protein, at 873,838 to 874,470
_03985
OKGIIK_03990: rplU - 50S ribosomal protein L21, at 874,581 to 874,895
rplU
OKGIIK_03995: rpmA - 50S ribosomal protein L27, at 874,915 to 875,172
rpmA
OKGIIK_04000: obgE - GTPase ObgE, at 875,351 to 876,430
obgE
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.699 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.718 kb on + strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.719 kb on - strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.720 kb on + strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.721 kb on - strand at 873.741 kb on + strand at 873.741 kb on + strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.742 kb on - strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.781 kb on + strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.782 kb on - strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.788 kb on + strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.789 kb on - strand at 873.843 kb on + strand at 873.844 kb on - strand at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.929 kb on + strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 873.930 kb on - strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.033 kb on + strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.034 kb on - strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.144 kb on + strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.145 kb on - strand, within OKGIIK_03985 at 874.510 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.260 kb on + strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.261 kb on - strand at 875.287 kb on + strand at 875.287 kb on + strand at 875.288 kb on - strand at 875.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 873,699 + +1.6 873,718 + -0.5 873,718 + +0.7 873,718 + -1.7 873,718 + -2.5 873,718 + -1.3 873,718 + -1.0 873,718 + -2.0 873,718 + +0.7 873,718 + +0.9 873,719 - -0.9 873,719 - +1.3 873,719 - +1.0 873,719 - -1.9 873,719 - -1.3 873,719 - +0.3 873,719 - -0.7 873,719 - -1.0 873,720 + +0.6 873,720 + +0.9 873,720 + -0.7 873,720 + -0.9 873,720 + -2.3 873,720 + -2.2 873,720 + +0.5 873,720 + -0.9 873,720 + -1.9 873,720 + -0.9 873,720 + -1.9 873,720 + +0.3 873,720 + -0.7 873,720 + +0.1 873,720 + -0.5 873,720 + +0.3 873,720 + -2.0 873,721 - +0.6 873,721 - -1.0 873,721 - +1.0 873,721 - +0.3 873,721 - -2.7 873,721 - -2.6 873,721 - +1.9 873,721 - -0.7 873,721 - -3.0 873,721 - -1.5 873,721 - -0.2 873,721 - -0.6 873,721 - +0.9 873,741 + -1.7 873,741 + -0.7 873,742 - -1.9 873,742 - +0.3 873,742 - -0.0 873,742 - -1.3 873,742 - +0.3 873,781 + +0.1 873,781 + +0.3 873,781 + -1.0 873,781 + -1.5 873,781 + -1.0 873,781 + -0.7 873,781 + -0.8 873,781 + -1.5 873,781 + +0.5 873,781 + +1.3 873,781 + -0.7 873,781 + -1.2 873,781 + -1.3 873,781 + +1.0 873,781 + -1.3 873,781 + +0.3 873,781 + +0.2 873,781 + -1.0 873,781 + +0.3 873,781 + +0.1 873,781 + -1.7 873,781 + +0.3 873,781 + -0.6 873,781 + -0.8 873,781 + +1.0 873,781 + -1.0 873,781 + -0.7 873,781 + -1.0 873,781 + -0.6 873,781 + +1.5 873,781 + +0.6 873,781 + -1.0 873,781 + -1.0 873,781 + -3.1 873,781 + -0.3 873,781 + -0.7 873,781 + -1.3 873,781 + +0.1 873,781 + +1.1 873,781 + +0.5 873,781 + +1.3 873,781 + +0.9 873,781 + -2.0 873,781 + +0.9 873,782 - -0.6 873,782 - +1.3 873,782 - -1.0 873,782 - -0.4 873,782 - -0.5 873,782 - -1.0 873,782 - +0.2 873,782 - -1.0 873,782 - -1.0 873,782 - -0.7 873,782 - -1.3 873,782 - -0.3 873,782 - -0.7 873,782 - -1.2 873,782 - +1.1 873,782 - +1.7 873,782 - +0.1 873,782 - +0.2 873,782 - +0.6 873,782 - -1.5 873,782 - -1.3 873,782 - -0.4 873,788 + +1.0 873,788 + -0.7 873,788 + -2.6 873,788 + +0.1 873,788 + -1.1 873,788 + -0.0 873,788 + +0.2 873,788 + -0.2 873,788 + -0.7 873,788 + +0.9 873,788 + -0.1 873,788 + +0.1 873,789 - +0.7 873,789 - -0.7 873,789 - +0.4 873,789 - +0.4 873,789 - +0.6 873,789 - -0.0 873,789 - -0.0 873,789 - -0.6 873,843 + +0.4 873,844 - -0.7 873,929 + OKGIIK_03985 0.14 -0.3 873,929 + OKGIIK_03985 0.14 -0.0 873,929 + OKGIIK_03985 0.14 -1.5 873,929 + OKGIIK_03985 0.14 +0.5 873,929 + OKGIIK_03985 0.14 -0.5 873,929 + OKGIIK_03985 0.14 -1.9 873,929 + OKGIIK_03985 0.14 -1.5 873,929 + OKGIIK_03985 0.14 +1.3 873,930 - OKGIIK_03985 0.15 -0.3 873,930 - OKGIIK_03985 0.15 -1.3 873,930 - OKGIIK_03985 0.15 -0.5 873,930 - OKGIIK_03985 0.15 -0.7 873,930 - OKGIIK_03985 0.15 -1.3 874,033 + OKGIIK_03985 0.31 -0.7 874,033 + OKGIIK_03985 0.31 -1.9 874,034 - OKGIIK_03985 0.31 +0.9 874,034 - OKGIIK_03985 0.31 -1.4 874,034 - OKGIIK_03985 0.31 -0.5 874,144 + OKGIIK_03985 0.48 +0.5 874,144 + OKGIIK_03985 0.48 -1.9 874,144 + OKGIIK_03985 0.48 -0.5 874,144 + OKGIIK_03985 0.48 +1.5 874,144 + OKGIIK_03985 0.48 -2.0 874,144 + OKGIIK_03985 0.48 +1.5 874,145 - OKGIIK_03985 0.48 -0.3 874,145 - OKGIIK_03985 0.48 -2.3 874,145 - OKGIIK_03985 0.48 -2.2 874,145 - OKGIIK_03985 0.48 +0.5 874,145 - OKGIIK_03985 0.48 -1.2 874,145 - OKGIIK_03985 0.48 +0.2 874,510 + -0.0 875,260 + +0.7 875,260 + -1.9 875,260 + -0.7 875,260 + -1.2 875,260 + -0.1 875,260 + +0.5 875,260 + -1.1 875,260 + -1.8 875,261 - -0.7 875,261 - -1.5 875,261 - -0.6 875,261 - -0.7 875,287 + -1.3 875,287 + +0.6 875,288 - +0.5 875,292 + -0.7
Or see this region's nucleotide sequence