Experiment: MoLS4 with (C) L-Lactate (20mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livM and livH are separated by 22 nucleotides livH and DVU2744 are separated by 109 nucleotides
DVU2742: livM - high-affinity branched chain amino acid ABC transporter, permease protein (TIGR), at 2,847,425 to 2,848,501
livM
DVU2743: livH - high-affinity branched-chain amino acid ABC ransporter, permease protein (TIGR), at 2,848,524 to 2,849,444
livH
DVU2744: DVU2744 - high-affinity branched-chain amino acid ABC transporter, perisplasmic amino acid binding protein (TIGR), at 2,849,554 to 2,850,711
DVU2744
Position (kb)
2848
2849
2850 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2847.556 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.583 kb on + strand, within livM at 2847.591 kb on - strand, within livM at 2847.591 kb on - strand, within livM at 2847.591 kb on - strand, within livM at 2847.762 kb on + strand, within livM at 2847.939 kb on + strand, within livM at 2847.961 kb on + strand, within livM at 2847.995 kb on + strand, within livM at 2848.062 kb on - strand, within livM at 2848.196 kb on - strand, within livM at 2848.210 kb on - strand, within livM at 2848.219 kb on + strand, within livM at 2848.224 kb on + strand, within livM at 2848.232 kb on - strand, within livM at 2848.247 kb on - strand, within livM at 2848.363 kb on + strand, within livM at 2848.460 kb on + strand at 2848.488 kb on + strand at 2848.488 kb on + strand at 2848.494 kb on - strand at 2848.502 kb on + strand at 2848.522 kb on + strand at 2848.556 kb on + strand at 2848.564 kb on - strand at 2848.587 kb on - strand at 2848.587 kb on - strand at 2848.623 kb on + strand, within livH at 2848.768 kb on + strand, within livH at 2848.768 kb on + strand, within livH at 2848.768 kb on + strand, within livH at 2848.776 kb on - strand, within livH at 2848.776 kb on - strand, within livH at 2848.780 kb on + strand, within livH at 2848.788 kb on - strand, within livH at 2848.835 kb on - strand, within livH at 2848.848 kb on - strand, within livH at 2848.932 kb on + strand, within livH at 2849.002 kb on + strand, within livH at 2849.019 kb on - strand, within livH at 2849.145 kb on + strand, within livH at 2849.223 kb on + strand, within livH at 2849.230 kb on - strand, within livH at 2849.284 kb on - strand, within livH at 2849.322 kb on - strand, within livH at 2849.355 kb on + strand at 2849.356 kb on + strand at 2849.356 kb on + strand at 2849.356 kb on - strand at 2849.368 kb on + strand at 2849.550 kb on + strand at 2849.766 kb on - strand, within DVU2744 at 2849.780 kb on + strand, within DVU2744 at 2849.828 kb on + strand, within DVU2744 at 2849.888 kb on + strand, within DVU2744 at 2849.893 kb on - strand, within DVU2744 at 2849.903 kb on + strand, within DVU2744 at 2849.912 kb on + strand, within DVU2744 at 2849.971 kb on + strand, within DVU2744 at 2850.046 kb on + strand, within DVU2744 at 2850.061 kb on - strand, within DVU2744 at 2850.080 kb on + strand, within DVU2744 at 2850.085 kb on + strand, within DVU2744 at 2850.123 kb on - strand, within DVU2744 at 2850.149 kb on - strand, within DVU2744 at 2850.271 kb on - strand, within DVU2744 at 2850.292 kb on + strand, within DVU2744 at 2850.361 kb on - strand, within DVU2744
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with (C) L-Lactate (20mM) remove 2,847,556 + livM DVU2742 0.12 +1.3 2,847,583 + livM DVU2742 0.15 -0.8 2,847,583 + livM DVU2742 0.15 -0.0 2,847,583 + livM DVU2742 0.15 +0.2 2,847,583 + livM DVU2742 0.15 +1.2 2,847,591 - livM DVU2742 0.15 +1.4 2,847,591 - livM DVU2742 0.15 +1.4 2,847,591 - livM DVU2742 0.15 +0.6 2,847,762 + livM DVU2742 0.31 +0.3 2,847,939 + livM DVU2742 0.48 +1.0 2,847,961 + livM DVU2742 0.50 +1.1 2,847,995 + livM DVU2742 0.53 +0.9 2,848,062 - livM DVU2742 0.59 +0.4 2,848,196 - livM DVU2742 0.72 +2.5 2,848,210 - livM DVU2742 0.73 +0.8 2,848,219 + livM DVU2742 0.74 +0.7 2,848,224 + livM DVU2742 0.74 +0.5 2,848,232 - livM DVU2742 0.75 +0.9 2,848,247 - livM DVU2742 0.76 +1.5 2,848,363 + livM DVU2742 0.87 +0.8 2,848,460 + +0.9 2,848,488 + +0.7 2,848,488 + +1.3 2,848,494 - -1.1 2,848,502 + -1.9 2,848,522 + +0.8 2,848,556 + +0.5 2,848,564 - +1.2 2,848,587 - +0.7 2,848,587 - +0.6 2,848,623 + livH DVU2743 0.11 +1.1 2,848,768 + livH DVU2743 0.26 +0.7 2,848,768 + livH DVU2743 0.26 +0.7 2,848,768 + livH DVU2743 0.26 +0.6 2,848,776 - livH DVU2743 0.27 +0.9 2,848,776 - livH DVU2743 0.27 +1.3 2,848,780 + livH DVU2743 0.28 +0.8 2,848,788 - livH DVU2743 0.29 +1.0 2,848,835 - livH DVU2743 0.34 +1.4 2,848,848 - livH DVU2743 0.35 +0.5 2,848,932 + livH DVU2743 0.44 +0.7 2,849,002 + livH DVU2743 0.52 +1.0 2,849,019 - livH DVU2743 0.54 +1.4 2,849,145 + livH DVU2743 0.67 -0.0 2,849,223 + livH DVU2743 0.76 +1.4 2,849,230 - livH DVU2743 0.77 +1.6 2,849,284 - livH DVU2743 0.83 +1.4 2,849,322 - livH DVU2743 0.87 +1.6 2,849,355 + +1.5 2,849,356 + +0.9 2,849,356 + +1.0 2,849,356 - +0.9 2,849,368 + +1.7 2,849,550 + +0.7 2,849,766 - DVU2744 0.18 +0.7 2,849,780 + DVU2744 0.20 +0.3 2,849,828 + DVU2744 0.24 +0.8 2,849,888 + DVU2744 0.29 +0.8 2,849,893 - DVU2744 0.29 +1.6 2,849,903 + DVU2744 0.30 +0.7 2,849,912 + DVU2744 0.31 +2.2 2,849,971 + DVU2744 0.36 +1.4 2,850,046 + DVU2744 0.42 +0.8 2,850,061 - DVU2744 0.44 +0.6 2,850,080 + DVU2744 0.45 +2.3 2,850,085 + DVU2744 0.46 +0.7 2,850,123 - DVU2744 0.49 +0.1 2,850,149 - DVU2744 0.51 +1.5 2,850,271 - DVU2744 0.62 +1.2 2,850,292 + DVU2744 0.64 +1.0 2,850,361 - DVU2744 0.70 +0.3
Or see this region's nucleotide sequence