Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06425

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_06415 and arsC are separated by 367 nucleotidesarsC and OKGIIK_06425 are separated by 23 nucleotidesOKGIIK_06425 and scpB overlap by 4 nucleotidesscpB and scpA overlap by 4 nucleotides OKGIIK_06415: OKGIIK_06415 - Hydrolase, at 1,412,000 to 1,412,638 _06415 OKGIIK_06420: arsC - arsenate reductase (glutaredoxin), at 1,413,006 to 1,413,350 arsC OKGIIK_06425: OKGIIK_06425 - Pseudouridine synthase, at 1,413,374 to 1,414,912 _06425 OKGIIK_06430: scpB - SMC-Scp complex subunit ScpB, at 1,414,909 to 1,415,724 scpB OKGIIK_06435: scpA - Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family, at 1,415,721 to 1,416,653 scpA Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1412.660 kb on + strandat 1412.660 kb on + strandat 1412.660 kb on + strandat 1412.660 kb on + strandat 1412.660 kb on + strandat 1412.661 kb on - strandat 1412.661 kb on - strandat 1412.661 kb on - strandat 1412.661 kb on - strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.737 kb on + strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.738 kb on - strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.741 kb on + strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.742 kb on - strandat 1412.816 kb on + strandat 1412.816 kb on + strandat 1412.816 kb on + strandat 1412.817 kb on - strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.847 kb on + strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.848 kb on - strandat 1412.894 kb on + strandat 1412.894 kb on + strandat 1412.894 kb on + strandat 1412.894 kb on + strandat 1412.895 kb on - strandat 1412.895 kb on - strandat 1412.895 kb on - strandat 1412.895 kb on - strandat 1413.160 kb on + strand, within arsCat 1413.161 kb on - strand, within arsCat 1413.161 kb on - strand, within arsCat 1413.161 kb on - strand, within arsCat 1413.161 kb on - strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.256 kb on + strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.257 kb on - strand, within arsCat 1413.337 kb on + strandat 1413.337 kb on + strandat 1413.337 kb on + strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.338 kb on - strandat 1413.487 kb on + strandat 1413.488 kb on - strandat 1413.488 kb on - strandat 1413.655 kb on - strand, within OKGIIK_06425at 1413.655 kb on - strand, within OKGIIK_06425at 1413.808 kb on + strand, within OKGIIK_06425at 1415.241 kb on - strand, within scpBat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpAat 1415.822 kb on - strand, within scpA

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,412,660 + +1.0
1,412,660 + -0.8
1,412,660 + +1.3
1,412,660 + +0.9
1,412,660 + -0.8
1,412,661 - +0.6
1,412,661 - -1.2
1,412,661 - +0.3
1,412,661 - +0.1
1,412,737 + +0.9
1,412,737 + -0.1
1,412,737 + -2.4
1,412,737 + -0.8
1,412,737 + -0.1
1,412,737 + -0.1
1,412,737 + +0.6
1,412,737 + +0.3
1,412,738 - -0.9
1,412,738 - -1.3
1,412,738 - -0.1
1,412,738 - +0.3
1,412,738 - -0.1
1,412,738 - -2.0
1,412,738 - -2.4
1,412,741 + +1.6
1,412,741 + -0.9
1,412,741 + -0.1
1,412,741 + +0.9
1,412,741 + +1.2
1,412,741 + +0.4
1,412,741 + +0.3
1,412,741 + -0.4
1,412,741 + -1.1
1,412,741 + -1.4
1,412,742 - -0.9
1,412,742 - -0.9
1,412,742 - +0.0
1,412,742 - +0.9
1,412,742 - -0.5
1,412,742 - +0.3
1,412,742 - -0.4
1,412,742 - +1.2
1,412,742 - -0.7
1,412,742 - -0.7
1,412,742 - -1.9
1,412,742 - +0.9
1,412,816 + +0.8
1,412,816 + +0.1
1,412,816 + -0.1
1,412,817 - -0.5
1,412,847 + +0.9
1,412,847 + +0.3
1,412,847 + +0.1
1,412,847 + -1.8
1,412,847 + -0.2
1,412,847 + +1.1
1,412,847 + -2.8
1,412,847 + +0.0
1,412,848 - -1.0
1,412,848 - +0.7
1,412,848 - +0.1
1,412,848 - +2.2
1,412,848 - -0.4
1,412,848 - +0.8
1,412,848 - +0.7
1,412,848 - -1.1
1,412,848 - -0.3
1,412,848 - -0.2
1,412,848 - +0.6
1,412,848 - -1.4
1,412,894 + +0.5
1,412,894 + +1.2
1,412,894 + -0.2
1,412,894 + -0.6
1,412,895 - +0.9
1,412,895 - +0.8
1,412,895 - +1.9
1,412,895 - -1.4
1,413,160 + arsC OKGIIK_06420 0.45 -1.4
1,413,161 - arsC OKGIIK_06420 0.45 -0.1
1,413,161 - arsC OKGIIK_06420 0.45 +0.9
1,413,161 - arsC OKGIIK_06420 0.45 +1.0
1,413,161 - arsC OKGIIK_06420 0.45 +1.9
1,413,256 + arsC OKGIIK_06420 0.72 -1.1
1,413,256 + arsC OKGIIK_06420 0.72 -0.4
1,413,256 + arsC OKGIIK_06420 0.72 +0.0
1,413,256 + arsC OKGIIK_06420 0.72 +0.2
1,413,256 + arsC OKGIIK_06420 0.72 -0.4
1,413,256 + arsC OKGIIK_06420 0.72 -0.4
1,413,256 + arsC OKGIIK_06420 0.72 +0.5
1,413,256 + arsC OKGIIK_06420 0.72 +1.5
1,413,256 + arsC OKGIIK_06420 0.72 -0.1
1,413,256 + arsC OKGIIK_06420 0.72 -1.1
1,413,257 - arsC OKGIIK_06420 0.73 +0.9
1,413,257 - arsC OKGIIK_06420 0.73 -0.4
1,413,257 - arsC OKGIIK_06420 0.73 -0.7
1,413,257 - arsC OKGIIK_06420 0.73 +1.2
1,413,257 - arsC OKGIIK_06420 0.73 +1.6
1,413,257 - arsC OKGIIK_06420 0.73 -0.3
1,413,257 - arsC OKGIIK_06420 0.73 +0.6
1,413,257 - arsC OKGIIK_06420 0.73 -0.4
1,413,257 - arsC OKGIIK_06420 0.73 -0.1
1,413,257 - arsC OKGIIK_06420 0.73 -0.1
1,413,257 - arsC OKGIIK_06420 0.73 -0.1
1,413,257 - arsC OKGIIK_06420 0.73 -1.0
1,413,257 - arsC OKGIIK_06420 0.73 -0.1
1,413,337 + +0.0
1,413,337 + +0.3
1,413,337 + -1.7
1,413,338 - -1.3
1,413,338 - +0.9
1,413,338 - -0.6
1,413,338 - -0.4
1,413,338 - -0.4
1,413,338 - -0.1
1,413,338 - +0.9
1,413,338 - -0.3
1,413,338 - -0.4
1,413,338 - -0.5
1,413,338 - -0.9
1,413,338 - -0.4
1,413,338 - +0.1
1,413,338 - -3.0
1,413,487 + -1.6
1,413,488 - -0.4
1,413,488 - +0.2
1,413,655 - OKGIIK_06425 0.18 -0.2
1,413,655 - OKGIIK_06425 0.18 +1.9
1,413,808 + OKGIIK_06425 0.28 -1.1
1,415,241 - scpB OKGIIK_06430 0.41 -2.2
1,415,822 - scpA OKGIIK_06435 0.11 +0.4
1,415,822 - scpA OKGIIK_06435 0.11 -0.3
1,415,822 - scpA OKGIIK_06435 0.11 -0.1
1,415,822 - scpA OKGIIK_06435 0.11 -0.7
1,415,822 - scpA OKGIIK_06435 0.11 +0.0
1,415,822 - scpA OKGIIK_06435 0.11 +0.7
1,415,822 - scpA OKGIIK_06435 0.11 +1.6
1,415,822 - scpA OKGIIK_06435 0.11 -0.9
1,415,822 - scpA OKGIIK_06435 0.11 +0.2
1,415,822 - scpA OKGIIK_06435 0.11 +0.3

Or see this region's nucleotide sequence