Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17980

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17970 and SGL_RS17975 are separated by 119 nucleotidesSGL_RS17975 and SGL_RS17980 are separated by 130 nucleotidesSGL_RS17980 and SGL_RS17985 are separated by 102 nucleotides SGL_RS17970: SGL_RS17970 - hypothetical protein, at 3,484,623 to 3,485,717 _RS17970 SGL_RS17975: SGL_RS17975 - hypothetical protein, at 3,485,837 to 3,486,562 _RS17975 SGL_RS17980: SGL_RS17980 - hypothetical protein, at 3,486,693 to 3,489,911 _RS17980 SGL_RS17985: SGL_RS17985 - hypothetical protein, at 3,490,014 to 3,491,501 _RS17985 Position (kb) 3486 3487 3488 3489 3490Strain fitness (log2 ratio) -1 0 1 2 3at 3486.184 kb on + strand, within SGL_RS17975at 3486.438 kb on - strand, within SGL_RS17975at 3486.588 kb on - strandat 3487.092 kb on - strand, within SGL_RS17980at 3487.177 kb on - strand, within SGL_RS17980at 3487.521 kb on + strand, within SGL_RS17980at 3487.776 kb on + strand, within SGL_RS17980at 3487.802 kb on + strand, within SGL_RS17980at 3488.316 kb on + strand, within SGL_RS17980at 3488.362 kb on - strand, within SGL_RS17980at 3488.420 kb on + strand, within SGL_RS17980at 3488.429 kb on + strand, within SGL_RS17980at 3488.657 kb on + strand, within SGL_RS17980at 3488.675 kb on - strand, within SGL_RS17980at 3488.676 kb on - strand, within SGL_RS17980at 3488.724 kb on + strand, within SGL_RS17980at 3489.533 kb on - strand, within SGL_RS17980at 3489.540 kb on - strand, within SGL_RS17980at 3489.810 kb on - strandat 3490.039 kb on - strandat 3490.233 kb on + strand, within SGL_RS17985at 3490.259 kb on - strand, within SGL_RS17985at 3490.286 kb on - strand, within SGL_RS17985at 3490.370 kb on + strand, within SGL_RS17985at 3490.474 kb on + strand, within SGL_RS17985at 3490.474 kb on + strand, within SGL_RS17985at 3490.474 kb on + strand, within SGL_RS17985at 3490.610 kb on - strand, within SGL_RS17985at 3490.614 kb on + strand, within SGL_RS17985at 3490.689 kb on + strand, within SGL_RS17985at 3490.708 kb on - strand, within SGL_RS17985at 3490.761 kb on + strand, within SGL_RS17985at 3490.793 kb on + strand, within SGL_RS17985at 3490.825 kb on - strand, within SGL_RS17985at 3490.907 kb on + strand, within SGL_RS17985at 3490.908 kb on + strand, within SGL_RS17985

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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3,486,184 + SGL_RS17975 0.48 +0.2
3,486,438 - SGL_RS17975 0.83 -0.1
3,486,588 - +0.4
3,487,092 - SGL_RS17980 0.12 +0.3
3,487,177 - SGL_RS17980 0.15 +0.3
3,487,521 + SGL_RS17980 0.26 +0.7
3,487,776 + SGL_RS17980 0.34 +0.1
3,487,802 + SGL_RS17980 0.34 -0.3
3,488,316 + SGL_RS17980 0.50 +0.1
3,488,362 - SGL_RS17980 0.52 +0.1
3,488,420 + SGL_RS17980 0.54 +0.2
3,488,429 + SGL_RS17980 0.54 +0.2
3,488,657 + SGL_RS17980 0.61 +1.4
3,488,675 - SGL_RS17980 0.62 -0.2
3,488,676 - SGL_RS17980 0.62 +0.2
3,488,724 + SGL_RS17980 0.63 +0.5
3,489,533 - SGL_RS17980 0.88 +0.4
3,489,540 - SGL_RS17980 0.88 +0.8
3,489,810 - -0.6
3,490,039 - -0.2
3,490,233 + SGL_RS17985 0.15 +3.0
3,490,259 - SGL_RS17985 0.16 -0.4
3,490,286 - SGL_RS17985 0.18 -0.1
3,490,370 + SGL_RS17985 0.24 +0.2
3,490,474 + SGL_RS17985 0.31 -0.1
3,490,474 + SGL_RS17985 0.31 -0.1
3,490,474 + SGL_RS17985 0.31 +0.0
3,490,610 - SGL_RS17985 0.40 -0.1
3,490,614 + SGL_RS17985 0.40 -0.1
3,490,689 + SGL_RS17985 0.45 +0.6
3,490,708 - SGL_RS17985 0.47 -0.1
3,490,761 + SGL_RS17985 0.50 -0.1
3,490,793 + SGL_RS17985 0.52 +0.3
3,490,825 - SGL_RS17985 0.55 -0.1
3,490,907 + SGL_RS17985 0.60 -0.2
3,490,908 + SGL_RS17985 0.60 -0.2

Or see this region's nucleotide sequence