Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16235

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16230 and SGL_RS16235 are separated by 390 nucleotidesSGL_RS16235 and SGL_RS16240 are separated by 62 nucleotidesSGL_RS16240 and SGL_RS19355 are separated by 79 nucleotides SGL_RS16230: SGL_RS16230 - hypothetical protein, at 3,091,764 to 3,093,017 _RS16230 SGL_RS16235: SGL_RS16235 - hypothetical protein, at 3,093,408 to 3,093,845 _RS16235 SGL_RS16240: SGL_RS16240 - IS5 family transposase, at 3,093,908 to 3,094,693 _RS16240 SGL_RS19355: SGL_RS19355 - transposase, at 3,094,773 to 3,094,970 _RS19355 Position (kb) 3093 3094Strain fitness (log2 ratio) -1 0 1at 3092.462 kb on + strand, within SGL_RS16230at 3092.509 kb on + strand, within SGL_RS16230at 3092.553 kb on + strand, within SGL_RS16230at 3092.561 kb on - strand, within SGL_RS16230at 3092.566 kb on + strand, within SGL_RS16230at 3092.566 kb on + strand, within SGL_RS16230at 3092.566 kb on + strand, within SGL_RS16230at 3092.574 kb on - strand, within SGL_RS16230at 3092.574 kb on - strand, within SGL_RS16230at 3092.574 kb on - strand, within SGL_RS16230at 3092.633 kb on + strand, within SGL_RS16230at 3092.656 kb on - strand, within SGL_RS16230at 3092.658 kb on + strand, within SGL_RS16230at 3092.659 kb on + strand, within SGL_RS16230at 3092.901 kb on + strandat 3092.925 kb on - strandat 3092.932 kb on + strandat 3092.933 kb on - strandat 3092.935 kb on - strandat 3092.935 kb on - strandat 3092.937 kb on + strandat 3092.945 kb on - strandat 3092.968 kb on + strandat 3093.027 kb on - strandat 3093.078 kb on - strandat 3093.078 kb on - strandat 3093.078 kb on - strandat 3093.163 kb on + strandat 3093.590 kb on + strand, within SGL_RS16235at 3093.658 kb on - strand, within SGL_RS16235at 3093.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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3,092,462 + SGL_RS16230 0.56 -0.4
3,092,509 + SGL_RS16230 0.59 -0.7
3,092,553 + SGL_RS16230 0.63 -0.3
3,092,561 - SGL_RS16230 0.64 +0.2
3,092,566 + SGL_RS16230 0.64 -0.0
3,092,566 + SGL_RS16230 0.64 +0.1
3,092,566 + SGL_RS16230 0.64 -0.1
3,092,574 - SGL_RS16230 0.65 +0.0
3,092,574 - SGL_RS16230 0.65 -0.3
3,092,574 - SGL_RS16230 0.65 -0.4
3,092,633 + SGL_RS16230 0.69 +0.2
3,092,656 - SGL_RS16230 0.71 +0.2
3,092,658 + SGL_RS16230 0.71 +0.2
3,092,659 + SGL_RS16230 0.71 -0.2
3,092,901 + +0.6
3,092,925 - +0.2
3,092,932 + +0.2
3,092,933 - +0.6
3,092,935 - +0.3
3,092,935 - +0.1
3,092,937 + +0.5
3,092,945 - +0.9
3,092,968 + -0.6
3,093,027 - -0.2
3,093,078 - -0.3
3,093,078 - -0.3
3,093,078 - +0.9
3,093,163 + +0.3
3,093,590 + SGL_RS16235 0.42 +0.1
3,093,658 - SGL_RS16235 0.57 +0.5
3,093,819 - +0.1

Or see this region's nucleotide sequence