Experiment: R2A_PIPES with Cobalt chloride 512 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nth and OKGIIK_04680 overlap by 4 nucleotides OKGIIK_04680 and metG are separated by 91 nucleotides metG and OKGIIK_04690 are separated by 227 nucleotides OKGIIK_04690 and apbC are separated by 156 nucleotides
OKGIIK_04675: nth - endonuclease III, at 1,021,385 to 1,022,020
nth
OKGIIK_04680: OKGIIK_04680 - Electron transporter RnfB, at 1,022,017 to 1,022,625
_04680
OKGIIK_04685: metG - methionine--tRNA ligase, at 1,022,717 to 1,024,846
metG
OKGIIK_04690: OKGIIK_04690 - DUF2147 domain-containing protein, at 1,025,074 to 1,025,538
_04690
OKGIIK_04695: apbC - iron-sulfur cluster carrier protein ApbC, at 1,025,695 to 1,026,789
apbC
Position (kb)
1022
1023
1024
1025 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.797 kb on + strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.798 kb on - strand, within nth at 1021.858 kb on - strand, within nth at 1021.944 kb on + strand, within nth at 1021.944 kb on + strand, within nth at 1021.945 kb on - strand, within nth at 1021.945 kb on - strand, within nth at 1021.945 kb on - strand, within nth at 1021.945 kb on - strand, within nth at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.304 kb on + strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.305 kb on - strand, within OKGIIK_04680 at 1022.543 kb on + strand, within OKGIIK_04680 at 1022.543 kb on + strand, within OKGIIK_04680 at 1022.685 kb on + strand at 1022.686 kb on - strand at 1022.686 kb on - strand at 1024.854 kb on - strand at 1024.854 kb on - strand at 1024.854 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1024.875 kb on - strand at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.126 kb on + strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.127 kb on - strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.180 kb on + strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.181 kb on - strand, within OKGIIK_04690 at 1025.274 kb on + strand, within OKGIIK_04690 at 1025.378 kb on + strand, within OKGIIK_04690 at 1025.378 kb on + strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.379 kb on - strand, within OKGIIK_04690 at 1025.563 kb on + strand at 1025.564 kb on - strand at 1025.564 kb on - strand at 1025.664 kb on + strand at 1025.664 kb on + strand at 1025.664 kb on + strand at 1025.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM remove 1,021,797 + nth OKGIIK_04675 0.65 -0.6 1,021,797 + nth OKGIIK_04675 0.65 +0.8 1,021,797 + nth OKGIIK_04675 0.65 +0.8 1,021,797 + nth OKGIIK_04675 0.65 +0.8 1,021,797 + nth OKGIIK_04675 0.65 -0.3 1,021,797 + nth OKGIIK_04675 0.65 +1.0 1,021,797 + nth OKGIIK_04675 0.65 +0.2 1,021,797 + nth OKGIIK_04675 0.65 -1.9 1,021,798 - nth OKGIIK_04675 0.65 +1.3 1,021,798 - nth OKGIIK_04675 0.65 -0.3 1,021,798 - nth OKGIIK_04675 0.65 +0.7 1,021,798 - nth OKGIIK_04675 0.65 -0.6 1,021,798 - nth OKGIIK_04675 0.65 +2.4 1,021,798 - nth OKGIIK_04675 0.65 -0.6 1,021,798 - nth OKGIIK_04675 0.65 +0.0 1,021,858 - nth OKGIIK_04675 0.74 -0.5 1,021,944 + nth OKGIIK_04675 0.88 +0.2 1,021,944 + nth OKGIIK_04675 0.88 -0.2 1,021,945 - nth OKGIIK_04675 0.88 -0.6 1,021,945 - nth OKGIIK_04675 0.88 -0.6 1,021,945 - nth OKGIIK_04675 0.88 -0.6 1,021,945 - nth OKGIIK_04675 0.88 +0.5 1,022,304 + OKGIIK_04680 0.47 -2.1 1,022,304 + OKGIIK_04680 0.47 +0.5 1,022,304 + OKGIIK_04680 0.47 +0.2 1,022,304 + OKGIIK_04680 0.47 -1.8 1,022,304 + OKGIIK_04680 0.47 -1.9 1,022,304 + OKGIIK_04680 0.47 -1.9 1,022,304 + OKGIIK_04680 0.47 -0.6 1,022,305 - OKGIIK_04680 0.47 +0.4 1,022,305 - OKGIIK_04680 0.47 -0.3 1,022,305 - OKGIIK_04680 0.47 +1.0 1,022,305 - OKGIIK_04680 0.47 -1.8 1,022,305 - OKGIIK_04680 0.47 -0.1 1,022,305 - OKGIIK_04680 0.47 -1.9 1,022,543 + OKGIIK_04680 0.86 -0.6 1,022,543 + OKGIIK_04680 0.86 -0.1 1,022,685 + -0.1 1,022,686 - +0.9 1,022,686 - -2.4 1,024,854 - +0.7 1,024,854 - -1.1 1,024,854 - +0.1 1,024,875 - +0.0 1,024,875 - -0.7 1,024,875 - +0.4 1,024,875 - +0.1 1,024,875 - +0.7 1,024,875 - +0.7 1,025,126 + OKGIIK_04690 0.11 +0.9 1,025,126 + OKGIIK_04690 0.11 +0.6 1,025,126 + OKGIIK_04690 0.11 -0.2 1,025,126 + OKGIIK_04690 0.11 -1.5 1,025,126 + OKGIIK_04690 0.11 -0.1 1,025,126 + OKGIIK_04690 0.11 -0.6 1,025,126 + OKGIIK_04690 0.11 +0.9 1,025,127 - OKGIIK_04690 0.11 -0.1 1,025,127 - OKGIIK_04690 0.11 +0.1 1,025,127 - OKGIIK_04690 0.11 -0.2 1,025,127 - OKGIIK_04690 0.11 -1.1 1,025,127 - OKGIIK_04690 0.11 +0.3 1,025,180 + OKGIIK_04690 0.23 -0.5 1,025,180 + OKGIIK_04690 0.23 +0.6 1,025,180 + OKGIIK_04690 0.23 +0.5 1,025,180 + OKGIIK_04690 0.23 -0.7 1,025,181 - OKGIIK_04690 0.23 -1.2 1,025,181 - OKGIIK_04690 0.23 +1.4 1,025,181 - OKGIIK_04690 0.23 +0.4 1,025,181 - OKGIIK_04690 0.23 -0.4 1,025,181 - OKGIIK_04690 0.23 -1.4 1,025,181 - OKGIIK_04690 0.23 -2.4 1,025,181 - OKGIIK_04690 0.23 +0.4 1,025,181 - OKGIIK_04690 0.23 -0.2 1,025,181 - OKGIIK_04690 0.23 -0.6 1,025,274 + OKGIIK_04690 0.43 -0.9 1,025,378 + OKGIIK_04690 0.65 -1.3 1,025,378 + OKGIIK_04690 0.65 -0.2 1,025,379 - OKGIIK_04690 0.66 -0.2 1,025,379 - OKGIIK_04690 0.66 +1.1 1,025,379 - OKGIIK_04690 0.66 +0.4 1,025,563 + -1.2 1,025,564 - +0.2 1,025,564 - +0.6 1,025,664 + +0.8 1,025,664 + -1.9 1,025,664 + -1.2 1,025,664 + +0.7
Or see this region's nucleotide sequence