Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_04685

Experiment: R2A_PIPES with Cobalt chloride 512 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnth and OKGIIK_04680 overlap by 4 nucleotidesOKGIIK_04680 and metG are separated by 91 nucleotidesmetG and OKGIIK_04690 are separated by 227 nucleotidesOKGIIK_04690 and apbC are separated by 156 nucleotides OKGIIK_04675: nth - endonuclease III, at 1,021,385 to 1,022,020 nth OKGIIK_04680: OKGIIK_04680 - Electron transporter RnfB, at 1,022,017 to 1,022,625 _04680 OKGIIK_04685: metG - methionine--tRNA ligase, at 1,022,717 to 1,024,846 metG OKGIIK_04690: OKGIIK_04690 - DUF2147 domain-containing protein, at 1,025,074 to 1,025,538 _04690 OKGIIK_04695: apbC - iron-sulfur cluster carrier protein ApbC, at 1,025,695 to 1,026,789 apbC Position (kb) 1022 1023 1024 1025Strain fitness (log2 ratio) -2 -1 0 1 2at 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.797 kb on + strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.798 kb on - strand, within nthat 1021.858 kb on - strand, within nthat 1021.944 kb on + strand, within nthat 1021.944 kb on + strand, within nthat 1021.945 kb on - strand, within nthat 1021.945 kb on - strand, within nthat 1021.945 kb on - strand, within nthat 1021.945 kb on - strand, within nthat 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.304 kb on + strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.305 kb on - strand, within OKGIIK_04680at 1022.543 kb on + strand, within OKGIIK_04680at 1022.543 kb on + strand, within OKGIIK_04680at 1022.685 kb on + strandat 1022.686 kb on - strandat 1022.686 kb on - strandat 1024.854 kb on - strandat 1024.854 kb on - strandat 1024.854 kb on - strandat 1024.875 kb on - strandat 1024.875 kb on - strandat 1024.875 kb on - strandat 1024.875 kb on - strandat 1024.875 kb on - strandat 1024.875 kb on - strandat 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.126 kb on + strand, within OKGIIK_04690at 1025.127 kb on - strand, within OKGIIK_04690at 1025.127 kb on - strand, within OKGIIK_04690at 1025.127 kb on - strand, within OKGIIK_04690at 1025.127 kb on - strand, within OKGIIK_04690at 1025.127 kb on - strand, within OKGIIK_04690at 1025.180 kb on + strand, within OKGIIK_04690at 1025.180 kb on + strand, within OKGIIK_04690at 1025.180 kb on + strand, within OKGIIK_04690at 1025.180 kb on + strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.181 kb on - strand, within OKGIIK_04690at 1025.274 kb on + strand, within OKGIIK_04690at 1025.378 kb on + strand, within OKGIIK_04690at 1025.378 kb on + strand, within OKGIIK_04690at 1025.379 kb on - strand, within OKGIIK_04690at 1025.379 kb on - strand, within OKGIIK_04690at 1025.379 kb on - strand, within OKGIIK_04690at 1025.563 kb on + strandat 1025.564 kb on - strandat 1025.564 kb on - strandat 1025.664 kb on + strandat 1025.664 kb on + strandat 1025.664 kb on + strandat 1025.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 512 uM
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1,021,797 + nth OKGIIK_04675 0.65 -0.6
1,021,797 + nth OKGIIK_04675 0.65 +0.8
1,021,797 + nth OKGIIK_04675 0.65 +0.8
1,021,797 + nth OKGIIK_04675 0.65 +0.8
1,021,797 + nth OKGIIK_04675 0.65 -0.3
1,021,797 + nth OKGIIK_04675 0.65 +1.0
1,021,797 + nth OKGIIK_04675 0.65 +0.2
1,021,797 + nth OKGIIK_04675 0.65 -1.9
1,021,798 - nth OKGIIK_04675 0.65 +1.3
1,021,798 - nth OKGIIK_04675 0.65 -0.3
1,021,798 - nth OKGIIK_04675 0.65 +0.7
1,021,798 - nth OKGIIK_04675 0.65 -0.6
1,021,798 - nth OKGIIK_04675 0.65 +2.4
1,021,798 - nth OKGIIK_04675 0.65 -0.6
1,021,798 - nth OKGIIK_04675 0.65 +0.0
1,021,858 - nth OKGIIK_04675 0.74 -0.5
1,021,944 + nth OKGIIK_04675 0.88 +0.2
1,021,944 + nth OKGIIK_04675 0.88 -0.2
1,021,945 - nth OKGIIK_04675 0.88 -0.6
1,021,945 - nth OKGIIK_04675 0.88 -0.6
1,021,945 - nth OKGIIK_04675 0.88 -0.6
1,021,945 - nth OKGIIK_04675 0.88 +0.5
1,022,304 + OKGIIK_04680 0.47 -2.1
1,022,304 + OKGIIK_04680 0.47 +0.5
1,022,304 + OKGIIK_04680 0.47 +0.2
1,022,304 + OKGIIK_04680 0.47 -1.8
1,022,304 + OKGIIK_04680 0.47 -1.9
1,022,304 + OKGIIK_04680 0.47 -1.9
1,022,304 + OKGIIK_04680 0.47 -0.6
1,022,305 - OKGIIK_04680 0.47 +0.4
1,022,305 - OKGIIK_04680 0.47 -0.3
1,022,305 - OKGIIK_04680 0.47 +1.0
1,022,305 - OKGIIK_04680 0.47 -1.8
1,022,305 - OKGIIK_04680 0.47 -0.1
1,022,305 - OKGIIK_04680 0.47 -1.9
1,022,543 + OKGIIK_04680 0.86 -0.6
1,022,543 + OKGIIK_04680 0.86 -0.1
1,022,685 + -0.1
1,022,686 - +0.9
1,022,686 - -2.4
1,024,854 - +0.7
1,024,854 - -1.1
1,024,854 - +0.1
1,024,875 - +0.0
1,024,875 - -0.7
1,024,875 - +0.4
1,024,875 - +0.1
1,024,875 - +0.7
1,024,875 - +0.7
1,025,126 + OKGIIK_04690 0.11 +0.9
1,025,126 + OKGIIK_04690 0.11 +0.6
1,025,126 + OKGIIK_04690 0.11 -0.2
1,025,126 + OKGIIK_04690 0.11 -1.5
1,025,126 + OKGIIK_04690 0.11 -0.1
1,025,126 + OKGIIK_04690 0.11 -0.6
1,025,126 + OKGIIK_04690 0.11 +0.9
1,025,127 - OKGIIK_04690 0.11 -0.1
1,025,127 - OKGIIK_04690 0.11 +0.1
1,025,127 - OKGIIK_04690 0.11 -0.2
1,025,127 - OKGIIK_04690 0.11 -1.1
1,025,127 - OKGIIK_04690 0.11 +0.3
1,025,180 + OKGIIK_04690 0.23 -0.5
1,025,180 + OKGIIK_04690 0.23 +0.6
1,025,180 + OKGIIK_04690 0.23 +0.5
1,025,180 + OKGIIK_04690 0.23 -0.7
1,025,181 - OKGIIK_04690 0.23 -1.2
1,025,181 - OKGIIK_04690 0.23 +1.4
1,025,181 - OKGIIK_04690 0.23 +0.4
1,025,181 - OKGIIK_04690 0.23 -0.4
1,025,181 - OKGIIK_04690 0.23 -1.4
1,025,181 - OKGIIK_04690 0.23 -2.4
1,025,181 - OKGIIK_04690 0.23 +0.4
1,025,181 - OKGIIK_04690 0.23 -0.2
1,025,181 - OKGIIK_04690 0.23 -0.6
1,025,274 + OKGIIK_04690 0.43 -0.9
1,025,378 + OKGIIK_04690 0.65 -1.3
1,025,378 + OKGIIK_04690 0.65 -0.2
1,025,379 - OKGIIK_04690 0.66 -0.2
1,025,379 - OKGIIK_04690 0.66 +1.1
1,025,379 - OKGIIK_04690 0.66 +0.4
1,025,563 + -1.2
1,025,564 - +0.2
1,025,564 - +0.6
1,025,664 + +0.8
1,025,664 + -1.9
1,025,664 + -1.2
1,025,664 + +0.7

Or see this region's nucleotide sequence