Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06059

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06058 and MPMX19_06059 are separated by 159 nucleotidesMPMX19_06059 and MPMX19_06060 are separated by 39 nucleotides MPMX19_06058: MPMX19_06058 - HTH-type transcriptional repressor RspR, at 223,850 to 224,608 _06058 MPMX19_06059: MPMX19_06059 - Mannitol 2-dehydrogenase, at 224,768 to 226,282 _06059 MPMX19_06060: MPMX19_06060 - Starvation-sensing protein RspB, at 226,322 to 227,350 _06060 Position (kb) 224 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 223.775 kb on + strandat 223.833 kb on + strandat 223.833 kb on + strandat 223.833 kb on + strandat 224.652 kb on + strandat 224.652 kb on + strandat 224.652 kb on + strandat 224.652 kb on + strandat 224.652 kb on + strandat 224.653 kb on - strandat 224.653 kb on - strandat 224.653 kb on - strandat 224.653 kb on - strandat 224.653 kb on - strandat 224.653 kb on - strandat 224.661 kb on + strandat 224.662 kb on - strandat 224.663 kb on + strandat 224.663 kb on + strandat 224.663 kb on + strandat 224.663 kb on + strandat 224.664 kb on - strandat 224.664 kb on - strandat 224.871 kb on - strandat 224.871 kb on - strandat 224.945 kb on + strand, within MPMX19_06059at 224.945 kb on + strand, within MPMX19_06059at 224.945 kb on + strand, within MPMX19_06059at 224.945 kb on + strand, within MPMX19_06059at 224.946 kb on - strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.050 kb on + strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.051 kb on - strand, within MPMX19_06059at 225.176 kb on - strand, within MPMX19_06059at 225.176 kb on - strand, within MPMX19_06059at 225.176 kb on - strand, within MPMX19_06059at 225.206 kb on + strand, within MPMX19_06059at 225.206 kb on + strand, within MPMX19_06059at 225.206 kb on + strand, within MPMX19_06059at 225.206 kb on + strand, within MPMX19_06059at 225.207 kb on - strand, within MPMX19_06059at 225.207 kb on - strand, within MPMX19_06059at 225.207 kb on - strand, within MPMX19_06059at 225.207 kb on - strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.671 kb on + strand, within MPMX19_06059at 225.672 kb on - strand, within MPMX19_06059at 225.672 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.723 kb on - strand, within MPMX19_06059at 225.732 kb on - strand, within MPMX19_06059at 225.732 kb on - strand, within MPMX19_06059at 225.744 kb on - strand, within MPMX19_06059at 225.744 kb on - strand, within MPMX19_06059at 225.851 kb on - strand, within MPMX19_06059at 225.851 kb on - strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.860 kb on + strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.861 kb on - strand, within MPMX19_06059at 225.958 kb on - strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.037 kb on + strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.038 kb on - strand, within MPMX19_06059at 226.309 kb on - strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.315 kb on + strandat 226.316 kb on + strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.316 kb on - strandat 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.460 kb on + strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.461 kb on - strand, within MPMX19_06060at 226.487 kb on + strand, within MPMX19_06060at 226.488 kb on - strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.607 kb on + strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.608 kb on - strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.829 kb on + strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 226.830 kb on - strand, within MPMX19_06060at 227.100 kb on + strand, within MPMX19_06060at 227.100 kb on + strand, within MPMX19_06060

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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223,775 + -0.1
223,833 + +0.2
223,833 + -1.3
223,833 + +0.4
224,652 + -0.3
224,652 + +0.1
224,652 + -1.6
224,652 + +0.8
224,652 + -1.2
224,653 - -0.7
224,653 - -1.2
224,653 - -1.7
224,653 - -1.8
224,653 - +0.1
224,653 - -0.2
224,661 + +1.3
224,662 - +0.4
224,663 + -0.7
224,663 + +0.4
224,663 + +0.9
224,663 + -1.2
224,664 - -0.6
224,664 - +0.8
224,871 - +0.1
224,871 - -0.2
224,945 + MPMX19_06059 0.12 -1.1
224,945 + MPMX19_06059 0.12 -0.2
224,945 + MPMX19_06059 0.12 -1.3
224,945 + MPMX19_06059 0.12 -0.5
224,946 - MPMX19_06059 0.12 +0.5
225,050 + MPMX19_06059 0.19 +0.9
225,050 + MPMX19_06059 0.19 +0.2
225,050 + MPMX19_06059 0.19 -1.3
225,050 + MPMX19_06059 0.19 +0.5
225,050 + MPMX19_06059 0.19 -0.9
225,050 + MPMX19_06059 0.19 -0.3
225,050 + MPMX19_06059 0.19 -1.9
225,050 + MPMX19_06059 0.19 -0.2
225,050 + MPMX19_06059 0.19 +0.2
225,050 + MPMX19_06059 0.19 +1.3
225,051 - MPMX19_06059 0.19 -1.6
225,051 - MPMX19_06059 0.19 -1.4
225,051 - MPMX19_06059 0.19 -0.8
225,051 - MPMX19_06059 0.19 -0.2
225,051 - MPMX19_06059 0.19 -0.8
225,051 - MPMX19_06059 0.19 +0.2
225,051 - MPMX19_06059 0.19 -0.1
225,051 - MPMX19_06059 0.19 -1.2
225,051 - MPMX19_06059 0.19 -0.4
225,051 - MPMX19_06059 0.19 +1.1
225,051 - MPMX19_06059 0.19 +1.3
225,051 - MPMX19_06059 0.19 -0.7
225,051 - MPMX19_06059 0.19 -1.2
225,176 - MPMX19_06059 0.27 +0.2
225,176 - MPMX19_06059 0.27 -0.2
225,176 - MPMX19_06059 0.27 -1.9
225,206 + MPMX19_06059 0.29 +0.3
225,206 + MPMX19_06059 0.29 -0.7
225,206 + MPMX19_06059 0.29 +0.2
225,206 + MPMX19_06059 0.29 +0.3
225,207 - MPMX19_06059 0.29 +1.3
225,207 - MPMX19_06059 0.29 +0.3
225,207 - MPMX19_06059 0.29 +1.5
225,207 - MPMX19_06059 0.29 -2.1
225,671 + MPMX19_06059 0.60 +0.4
225,671 + MPMX19_06059 0.60 -0.7
225,671 + MPMX19_06059 0.60 -0.8
225,671 + MPMX19_06059 0.60 -0.5
225,671 + MPMX19_06059 0.60 -0.6
225,672 - MPMX19_06059 0.60 -0.3
225,672 - MPMX19_06059 0.60 +0.5
225,723 - MPMX19_06059 0.63 -0.2
225,723 - MPMX19_06059 0.63 -1.6
225,723 - MPMX19_06059 0.63 -0.2
225,732 - MPMX19_06059 0.64 -1.0
225,732 - MPMX19_06059 0.64 -1.0
225,744 - MPMX19_06059 0.64 +0.5
225,744 - MPMX19_06059 0.64 -0.8
225,851 - MPMX19_06059 0.71 +0.1
225,851 - MPMX19_06059 0.71 -0.0
225,860 + MPMX19_06059 0.72 +1.3
225,860 + MPMX19_06059 0.72 -0.3
225,860 + MPMX19_06059 0.72 +0.6
225,860 + MPMX19_06059 0.72 +0.8
225,860 + MPMX19_06059 0.72 -0.2
225,860 + MPMX19_06059 0.72 -0.5
225,860 + MPMX19_06059 0.72 +0.2
225,860 + MPMX19_06059 0.72 +0.8
225,860 + MPMX19_06059 0.72 -0.5
225,860 + MPMX19_06059 0.72 +0.1
225,860 + MPMX19_06059 0.72 -2.2
225,860 + MPMX19_06059 0.72 -0.8
225,860 + MPMX19_06059 0.72 -1.1
225,860 + MPMX19_06059 0.72 -1.1
225,860 + MPMX19_06059 0.72 -0.1
225,860 + MPMX19_06059 0.72 -0.2
225,861 - MPMX19_06059 0.72 +0.9
225,861 - MPMX19_06059 0.72 +0.1
225,861 - MPMX19_06059 0.72 -0.3
225,861 - MPMX19_06059 0.72 -1.2
225,861 - MPMX19_06059 0.72 -1.0
225,861 - MPMX19_06059 0.72 +0.6
225,861 - MPMX19_06059 0.72 -0.8
225,861 - MPMX19_06059 0.72 -1.1
225,861 - MPMX19_06059 0.72 +0.3
225,861 - MPMX19_06059 0.72 +1.0
225,861 - MPMX19_06059 0.72 -0.3
225,861 - MPMX19_06059 0.72 -1.2
225,861 - MPMX19_06059 0.72 +0.3
225,861 - MPMX19_06059 0.72 -0.4
225,861 - MPMX19_06059 0.72 -0.6
225,958 - MPMX19_06059 0.79 -0.4
226,037 + MPMX19_06059 0.84 -1.2
226,037 + MPMX19_06059 0.84 -1.1
226,037 + MPMX19_06059 0.84 -0.4
226,037 + MPMX19_06059 0.84 +0.1
226,037 + MPMX19_06059 0.84 -0.2
226,038 - MPMX19_06059 0.84 +1.1
226,038 - MPMX19_06059 0.84 +0.3
226,038 - MPMX19_06059 0.84 +1.5
226,038 - MPMX19_06059 0.84 +0.2
226,309 - -0.1
226,315 + -1.6
226,315 + -0.8
226,315 + -0.1
226,315 + +0.6
226,316 + -0.7
226,316 - -0.2
226,316 - -1.8
226,316 - +0.2
226,316 - +0.1
226,316 - +0.5
226,316 - +0.4
226,460 + MPMX19_06060 0.13 +0.2
226,460 + MPMX19_06060 0.13 +0.4
226,460 + MPMX19_06060 0.13 -1.8
226,460 + MPMX19_06060 0.13 +0.8
226,460 + MPMX19_06060 0.13 +0.4
226,460 + MPMX19_06060 0.13 +0.5
226,460 + MPMX19_06060 0.13 -1.6
226,460 + MPMX19_06060 0.13 -0.6
226,460 + MPMX19_06060 0.13 -0.2
226,460 + MPMX19_06060 0.13 +0.2
226,460 + MPMX19_06060 0.13 +0.2
226,460 + MPMX19_06060 0.13 -0.4
226,460 + MPMX19_06060 0.13 -0.2
226,460 + MPMX19_06060 0.13 -2.1
226,460 + MPMX19_06060 0.13 -2.0
226,460 + MPMX19_06060 0.13 -0.0
226,461 - MPMX19_06060 0.14 -2.2
226,461 - MPMX19_06060 0.14 -0.5
226,461 - MPMX19_06060 0.14 -0.4
226,461 - MPMX19_06060 0.14 -0.1
226,461 - MPMX19_06060 0.14 -0.2
226,461 - MPMX19_06060 0.14 -0.2
226,461 - MPMX19_06060 0.14 -1.1
226,461 - MPMX19_06060 0.14 -0.6
226,461 - MPMX19_06060 0.14 -0.6
226,461 - MPMX19_06060 0.14 -1.6
226,461 - MPMX19_06060 0.14 -1.6
226,461 - MPMX19_06060 0.14 +0.4
226,461 - MPMX19_06060 0.14 -1.1
226,461 - MPMX19_06060 0.14 +0.4
226,487 + MPMX19_06060 0.16 -1.2
226,488 - MPMX19_06060 0.16 -0.9
226,607 + MPMX19_06060 0.28 +0.5
226,607 + MPMX19_06060 0.28 +0.5
226,607 + MPMX19_06060 0.28 +1.2
226,607 + MPMX19_06060 0.28 +0.5
226,607 + MPMX19_06060 0.28 +0.2
226,607 + MPMX19_06060 0.28 +0.8
226,607 + MPMX19_06060 0.28 -0.7
226,607 + MPMX19_06060 0.28 +0.9
226,608 - MPMX19_06060 0.28 +0.6
226,608 - MPMX19_06060 0.28 -2.1
226,608 - MPMX19_06060 0.28 -2.7
226,608 - MPMX19_06060 0.28 +0.2
226,608 - MPMX19_06060 0.28 -1.9
226,608 - MPMX19_06060 0.28 +0.4
226,608 - MPMX19_06060 0.28 -0.1
226,608 - MPMX19_06060 0.28 -0.8
226,829 + MPMX19_06060 0.49 -0.7
226,829 + MPMX19_06060 0.49 -0.4
226,829 + MPMX19_06060 0.49 -0.3
226,829 + MPMX19_06060 0.49 -0.6
226,829 + MPMX19_06060 0.49 -1.4
226,829 + MPMX19_06060 0.49 +0.4
226,830 - MPMX19_06060 0.49 -0.2
226,830 - MPMX19_06060 0.49 -0.6
226,830 - MPMX19_06060 0.49 -0.7
226,830 - MPMX19_06060 0.49 -0.5
227,100 + MPMX19_06060 0.76 -1.4
227,100 + MPMX19_06060 0.76 -0.1

Or see this region's nucleotide sequence