Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05791

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05789 and MPMX19_05790 are separated by 69 nucleotidesMPMX19_05790 and MPMX19_05791 are separated by 83 nucleotidesMPMX19_05791 and MPMX19_05792 are separated by 316 nucleotides MPMX19_05789: MPMX19_05789 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 511,869 to 512,627 _05789 MPMX19_05790: MPMX19_05790 - hypothetical protein, at 512,697 to 513,080 _05790 MPMX19_05791: MPMX19_05791 - HTH-type transcriptional repressor RspR, at 513,164 to 513,934 _05791 MPMX19_05792: MPMX19_05792 - Uronate isomerase, at 514,251 to 515,651 _05792 Position (kb) 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.337 kb on + strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.338 kb on - strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.433 kb on + strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.434 kb on - strand, within MPMX19_05789at 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.577 kb on + strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.578 kb on - strandat 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.790 kb on + strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.791 kb on - strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.946 kb on + strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 512.947 kb on - strand, within MPMX19_05790at 513.054 kb on + strandat 513.054 kb on + strandat 513.054 kb on + strandat 513.054 kb on + strandat 513.054 kb on + strandat 513.054 kb on + strandat 513.055 kb on - strandat 513.078 kb on + strandat 513.078 kb on + strandat 513.078 kb on + strandat 513.079 kb on - strandat 513.079 kb on - strandat 513.079 kb on - strandat 513.165 kb on + strandat 513.165 kb on + strandat 513.165 kb on + strandat 513.165 kb on + strandat 513.165 kb on + strandat 513.166 kb on - strandat 513.192 kb on + strandat 513.192 kb on + strandat 513.192 kb on + strandat 513.201 kb on + strandat 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.477 kb on + strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.478 kb on - strand, within MPMX19_05791at 513.564 kb on + strand, within MPMX19_05791at 513.565 kb on - strand, within MPMX19_05791at 513.565 kb on - strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.729 kb on + strand, within MPMX19_05791at 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.958 kb on + strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 513.959 kb on - strandat 514.017 kb on + strandat 514.017 kb on + strandat 514.018 kb on - strandat 514.148 kb on + strandat 514.239 kb on + strandat 514.239 kb on + strandat 514.239 kb on + strandat 514.239 kb on + strandat 514.239 kb on + strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.240 kb on - strandat 514.431 kb on + strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.432 kb on - strand, within MPMX19_05792at 514.449 kb on + strand, within MPMX19_05792at 514.449 kb on + strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.450 kb on - strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.656 kb on + strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.657 kb on - strand, within MPMX19_05792at 514.692 kb on + strand, within MPMX19_05792at 514.692 kb on + strand, within MPMX19_05792at 514.693 kb on - strand, within MPMX19_05792at 514.693 kb on - strand, within MPMX19_05792at 514.923 kb on + strand, within MPMX19_05792at 514.923 kb on + strand, within MPMX19_05792at 514.923 kb on + strand, within MPMX19_05792at 514.923 kb on + strand, within MPMX19_05792at 514.923 kb on + strand, within MPMX19_05792at 514.924 kb on - strand, within MPMX19_05792at 514.924 kb on - strand, within MPMX19_05792at 514.924 kb on - strand, within MPMX19_05792at 514.924 kb on - strand, within MPMX19_05792

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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512,337 + MPMX19_05789 0.62 -0.1
512,337 + MPMX19_05789 0.62 -1.6
512,337 + MPMX19_05789 0.62 -0.6
512,337 + MPMX19_05789 0.62 +0.3
512,337 + MPMX19_05789 0.62 +0.4
512,337 + MPMX19_05789 0.62 -0.5
512,337 + MPMX19_05789 0.62 -0.9
512,337 + MPMX19_05789 0.62 +0.1
512,337 + MPMX19_05789 0.62 +0.7
512,337 + MPMX19_05789 0.62 -2.6
512,338 - MPMX19_05789 0.62 -2.1
512,338 - MPMX19_05789 0.62 -0.6
512,338 - MPMX19_05789 0.62 -0.5
512,338 - MPMX19_05789 0.62 -0.5
512,338 - MPMX19_05789 0.62 +0.1
512,338 - MPMX19_05789 0.62 -0.5
512,433 + MPMX19_05789 0.74 +0.1
512,433 + MPMX19_05789 0.74 -1.1
512,433 + MPMX19_05789 0.74 -0.3
512,433 + MPMX19_05789 0.74 -0.0
512,433 + MPMX19_05789 0.74 -0.6
512,434 - MPMX19_05789 0.74 -2.2
512,434 - MPMX19_05789 0.74 -1.6
512,434 - MPMX19_05789 0.74 +0.1
512,434 - MPMX19_05789 0.74 -0.6
512,577 + -0.3
512,577 + -1.0
512,577 + -1.2
512,577 + -0.1
512,577 + -0.6
512,577 + -0.0
512,577 + -1.4
512,577 + -1.1
512,578 - +0.7
512,578 - -1.6
512,578 - +0.5
512,578 - -0.8
512,578 - -0.9
512,578 - +0.3
512,790 + MPMX19_05790 0.24 -0.7
512,790 + MPMX19_05790 0.24 -0.6
512,790 + MPMX19_05790 0.24 -2.3
512,790 + MPMX19_05790 0.24 +1.0
512,790 + MPMX19_05790 0.24 -0.1
512,791 - MPMX19_05790 0.24 -1.0
512,791 - MPMX19_05790 0.24 -0.0
512,791 - MPMX19_05790 0.24 +1.3
512,791 - MPMX19_05790 0.24 -0.3
512,791 - MPMX19_05790 0.24 -0.0
512,791 - MPMX19_05790 0.24 -1.3
512,791 - MPMX19_05790 0.24 +0.2
512,946 + MPMX19_05790 0.65 +0.7
512,946 + MPMX19_05790 0.65 +0.2
512,946 + MPMX19_05790 0.65 +0.2
512,946 + MPMX19_05790 0.65 +0.4
512,946 + MPMX19_05790 0.65 -1.9
512,946 + MPMX19_05790 0.65 -1.9
512,946 + MPMX19_05790 0.65 -0.3
512,946 + MPMX19_05790 0.65 +0.4
512,947 - MPMX19_05790 0.65 -0.3
512,947 - MPMX19_05790 0.65 -0.9
512,947 - MPMX19_05790 0.65 +0.6
512,947 - MPMX19_05790 0.65 -0.4
512,947 - MPMX19_05790 0.65 -0.0
512,947 - MPMX19_05790 0.65 -1.1
512,947 - MPMX19_05790 0.65 -2.6
512,947 - MPMX19_05790 0.65 +0.2
512,947 - MPMX19_05790 0.65 -0.5
513,054 + +1.5
513,054 + +0.5
513,054 + -1.4
513,054 + -0.3
513,054 + +0.1
513,054 + +0.3
513,055 - +0.7
513,078 + -1.3
513,078 + -2.1
513,078 + -1.0
513,079 - +0.3
513,079 - +0.4
513,079 - -0.0
513,165 + -0.3
513,165 + +0.9
513,165 + -0.4
513,165 + +0.3
513,165 + -0.2
513,166 - -1.1
513,192 + +0.6
513,192 + -0.2
513,192 + -0.5
513,201 + -0.1
513,477 + MPMX19_05791 0.41 -1.0
513,477 + MPMX19_05791 0.41 +0.4
513,477 + MPMX19_05791 0.41 +0.6
513,477 + MPMX19_05791 0.41 +0.4
513,477 + MPMX19_05791 0.41 +0.4
513,477 + MPMX19_05791 0.41 +0.7
513,477 + MPMX19_05791 0.41 -0.1
513,477 + MPMX19_05791 0.41 +0.2
513,477 + MPMX19_05791 0.41 +1.0
513,477 + MPMX19_05791 0.41 +0.3
513,477 + MPMX19_05791 0.41 +1.5
513,477 + MPMX19_05791 0.41 -2.2
513,477 + MPMX19_05791 0.41 -2.6
513,477 + MPMX19_05791 0.41 -3.0
513,477 + MPMX19_05791 0.41 -0.6
513,477 + MPMX19_05791 0.41 -0.1
513,477 + MPMX19_05791 0.41 -1.4
513,477 + MPMX19_05791 0.41 -0.3
513,477 + MPMX19_05791 0.41 -0.2
513,477 + MPMX19_05791 0.41 -0.5
513,478 - MPMX19_05791 0.41 -0.9
513,478 - MPMX19_05791 0.41 -0.7
513,478 - MPMX19_05791 0.41 -0.1
513,478 - MPMX19_05791 0.41 -1.5
513,478 - MPMX19_05791 0.41 +0.3
513,478 - MPMX19_05791 0.41 +0.8
513,478 - MPMX19_05791 0.41 -0.5
513,478 - MPMX19_05791 0.41 +1.0
513,478 - MPMX19_05791 0.41 -1.3
513,478 - MPMX19_05791 0.41 -0.2
513,478 - MPMX19_05791 0.41 +0.4
513,478 - MPMX19_05791 0.41 -0.3
513,478 - MPMX19_05791 0.41 -0.1
513,478 - MPMX19_05791 0.41 +0.1
513,478 - MPMX19_05791 0.41 +0.6
513,478 - MPMX19_05791 0.41 +1.3
513,478 - MPMX19_05791 0.41 -0.3
513,478 - MPMX19_05791 0.41 -0.9
513,478 - MPMX19_05791 0.41 +0.7
513,478 - MPMX19_05791 0.41 -0.1
513,478 - MPMX19_05791 0.41 -0.6
513,564 + MPMX19_05791 0.52 -1.1
513,565 - MPMX19_05791 0.52 +1.1
513,565 - MPMX19_05791 0.52 -1.5
513,729 + MPMX19_05791 0.73 +0.7
513,729 + MPMX19_05791 0.73 -2.0
513,729 + MPMX19_05791 0.73 -0.4
513,729 + MPMX19_05791 0.73 +0.9
513,729 + MPMX19_05791 0.73 +1.1
513,729 + MPMX19_05791 0.73 +0.2
513,729 + MPMX19_05791 0.73 -0.9
513,729 + MPMX19_05791 0.73 +0.1
513,729 + MPMX19_05791 0.73 -0.4
513,729 + MPMX19_05791 0.73 -1.1
513,729 + MPMX19_05791 0.73 -1.8
513,958 + +0.3
513,958 + -2.6
513,958 + -1.3
513,958 + -2.6
513,958 + -0.5
513,958 + +0.3
513,958 + -2.0
513,958 + +0.3
513,958 + -0.3
513,958 + -0.6
513,958 + +0.1
513,958 + -1.5
513,958 + -0.5
513,958 + -0.8
513,958 + -0.9
513,958 + +0.1
513,958 + -0.6
513,958 + -0.8
513,958 + -0.9
513,958 + -0.8
513,959 - -0.1
513,959 - +0.7
513,959 - +1.0
513,959 - -2.5
513,959 - -2.6
513,959 - -0.2
513,959 - -0.4
513,959 - +1.7
513,959 - -2.1
513,959 - -1.8
513,959 - -1.0
513,959 - -1.6
513,959 - -0.6
513,959 - -0.8
513,959 - +0.8
514,017 + +0.4
514,017 + -0.3
514,018 - +1.1
514,148 + +0.1
514,239 + -2.5
514,239 + -2.7
514,239 + +1.1
514,239 + -1.1
514,239 + -0.1
514,240 - -1.8
514,240 - +1.2
514,240 - +1.0
514,240 - -1.8
514,240 - -0.7
514,240 - +0.4
514,240 - +0.5
514,431 + MPMX19_05792 0.13 +0.1
514,432 - MPMX19_05792 0.13 -0.2
514,432 - MPMX19_05792 0.13 +1.4
514,432 - MPMX19_05792 0.13 -0.0
514,432 - MPMX19_05792 0.13 -0.4
514,432 - MPMX19_05792 0.13 +0.1
514,432 - MPMX19_05792 0.13 -0.3
514,432 - MPMX19_05792 0.13 -1.8
514,432 - MPMX19_05792 0.13 -1.1
514,432 - MPMX19_05792 0.13 -0.1
514,449 + MPMX19_05792 0.14 -0.5
514,449 + MPMX19_05792 0.14 +0.9
514,450 - MPMX19_05792 0.14 -0.3
514,450 - MPMX19_05792 0.14 +0.6
514,450 - MPMX19_05792 0.14 -0.8
514,450 - MPMX19_05792 0.14 +0.2
514,450 - MPMX19_05792 0.14 +1.1
514,450 - MPMX19_05792 0.14 -1.1
514,450 - MPMX19_05792 0.14 -0.6
514,450 - MPMX19_05792 0.14 +0.1
514,450 - MPMX19_05792 0.14 -0.4
514,656 + MPMX19_05792 0.29 +0.9
514,656 + MPMX19_05792 0.29 +1.2
514,656 + MPMX19_05792 0.29 -0.6
514,656 + MPMX19_05792 0.29 +0.5
514,656 + MPMX19_05792 0.29 +2.0
514,656 + MPMX19_05792 0.29 -0.5
514,656 + MPMX19_05792 0.29 -0.1
514,656 + MPMX19_05792 0.29 -0.8
514,656 + MPMX19_05792 0.29 +0.7
514,656 + MPMX19_05792 0.29 -0.5
514,656 + MPMX19_05792 0.29 +1.7
514,657 - MPMX19_05792 0.29 +0.1
514,657 - MPMX19_05792 0.29 +0.4
514,657 - MPMX19_05792 0.29 -0.3
514,657 - MPMX19_05792 0.29 -0.3
514,657 - MPMX19_05792 0.29 +1.0
514,657 - MPMX19_05792 0.29 +1.1
514,657 - MPMX19_05792 0.29 +0.1
514,657 - MPMX19_05792 0.29 -1.1
514,657 - MPMX19_05792 0.29 -1.5
514,657 - MPMX19_05792 0.29 +0.3
514,657 - MPMX19_05792 0.29 -1.7
514,657 - MPMX19_05792 0.29 +0.3
514,657 - MPMX19_05792 0.29 -2.4
514,692 + MPMX19_05792 0.31 -0.8
514,692 + MPMX19_05792 0.31 -0.4
514,693 - MPMX19_05792 0.32 -0.6
514,693 - MPMX19_05792 0.32 +0.1
514,923 + MPMX19_05792 0.48 -0.0
514,923 + MPMX19_05792 0.48 -0.6
514,923 + MPMX19_05792 0.48 -0.5
514,923 + MPMX19_05792 0.48 +0.5
514,923 + MPMX19_05792 0.48 -0.5
514,924 - MPMX19_05792 0.48 +0.2
514,924 - MPMX19_05792 0.48 +0.3
514,924 - MPMX19_05792 0.48 +0.7
514,924 - MPMX19_05792 0.48 -1.1

Or see this region's nucleotide sequence