Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04780

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04779 and MPMX19_04780 are separated by 497 nucleotidesMPMX19_04780 and MPMX19_04781 are separated by 125 nucleotides MPMX19_04779: MPMX19_04779 - hypothetical protein, at 174,701 to 175,330 _04779 MPMX19_04780: MPMX19_04780 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 175,828 to 176,574 _04780 MPMX19_04781: MPMX19_04781 - hypothetical protein, at 176,700 to 177,782 _04781 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.239 kb on + strand, within MPMX19_04779at 175.399 kb on + strandat 175.400 kb on - strandat 175.547 kb on + strandat 175.547 kb on + strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.548 kb on - strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.629 kb on + strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.630 kb on - strandat 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.918 kb on + strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.919 kb on - strand, within MPMX19_04780at 175.943 kb on + strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.944 kb on - strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.973 kb on + strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.974 kb on - strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.996 kb on + strand, within MPMX19_04780at 175.997 kb on + strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 175.997 kb on - strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.132 kb on + strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.133 kb on - strand, within MPMX19_04780at 176.267 kb on + strand, within MPMX19_04780at 176.427 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.447 kb on + strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.448 kb on - strand, within MPMX19_04780at 176.478 kb on + strand, within MPMX19_04780at 176.478 kb on + strand, within MPMX19_04780at 176.479 kb on - strand, within MPMX19_04780at 176.479 kb on - strand, within MPMX19_04780at 176.567 kb on + strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.568 kb on - strandat 176.968 kb on + strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 176.969 kb on - strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.013 kb on + strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.014 kb on - strand, within MPMX19_04781at 177.519 kb on + strand, within MPMX19_04781at 177.572 kb on + strand, within MPMX19_04781

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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175,099 + MPMX19_04779 0.63 -0.1
175,099 + MPMX19_04779 0.63 -0.8
175,099 + MPMX19_04779 0.63 +0.2
175,239 + MPMX19_04779 0.85 +0.0
175,399 + -0.1
175,400 - -0.3
175,547 + -0.3
175,547 + +0.0
175,548 - -0.1
175,548 - +0.1
175,548 - -0.1
175,548 - -0.9
175,629 + -0.1
175,629 + +0.4
175,629 + +0.2
175,629 + -0.9
175,630 - -0.2
175,630 - +0.4
175,630 - -1.3
175,630 - -1.7
175,630 - +0.2
175,630 - -0.6
175,630 - +1.5
175,630 - +0.5
175,630 - -0.1
175,630 - +0.2
175,630 - -1.6
175,918 + MPMX19_04780 0.12 -0.1
175,918 + MPMX19_04780 0.12 -0.6
175,918 + MPMX19_04780 0.12 -0.0
175,919 - MPMX19_04780 0.12 +0.6
175,919 - MPMX19_04780 0.12 +0.7
175,919 - MPMX19_04780 0.12 -1.5
175,919 - MPMX19_04780 0.12 -0.0
175,919 - MPMX19_04780 0.12 -0.6
175,943 + MPMX19_04780 0.15 +0.4
175,944 - MPMX19_04780 0.16 -0.0
175,944 - MPMX19_04780 0.16 -1.4
175,944 - MPMX19_04780 0.16 -1.5
175,973 + MPMX19_04780 0.19 -0.5
175,973 + MPMX19_04780 0.19 +0.2
175,973 + MPMX19_04780 0.19 +0.5
175,973 + MPMX19_04780 0.19 -1.3
175,973 + MPMX19_04780 0.19 -2.3
175,974 - MPMX19_04780 0.20 +0.3
175,974 - MPMX19_04780 0.20 -1.0
175,974 - MPMX19_04780 0.20 -0.2
175,996 + MPMX19_04780 0.22 -1.1
175,996 + MPMX19_04780 0.22 -0.3
175,996 + MPMX19_04780 0.22 -1.3
175,996 + MPMX19_04780 0.22 +0.7
175,996 + MPMX19_04780 0.22 -0.3
175,996 + MPMX19_04780 0.22 -1.1
175,996 + MPMX19_04780 0.22 +2.3
175,996 + MPMX19_04780 0.22 -0.6
175,997 + MPMX19_04780 0.23 -1.0
175,997 - MPMX19_04780 0.23 -0.0
175,997 - MPMX19_04780 0.23 +0.7
175,997 - MPMX19_04780 0.23 -1.3
175,997 - MPMX19_04780 0.23 +0.1
175,997 - MPMX19_04780 0.23 -1.0
176,132 + MPMX19_04780 0.41 +0.2
176,132 + MPMX19_04780 0.41 -1.3
176,133 - MPMX19_04780 0.41 -0.6
176,133 - MPMX19_04780 0.41 +0.1
176,267 + MPMX19_04780 0.59 -0.3
176,427 + MPMX19_04780 0.80 -0.3
176,447 + MPMX19_04780 0.83 -0.2
176,447 + MPMX19_04780 0.83 -0.0
176,447 + MPMX19_04780 0.83 +0.1
176,447 + MPMX19_04780 0.83 -0.3
176,447 + MPMX19_04780 0.83 -1.0
176,447 + MPMX19_04780 0.83 -1.2
176,447 + MPMX19_04780 0.83 -0.1
176,448 - MPMX19_04780 0.83 -0.0
176,448 - MPMX19_04780 0.83 +0.5
176,448 - MPMX19_04780 0.83 -0.5
176,448 - MPMX19_04780 0.83 -2.0
176,448 - MPMX19_04780 0.83 -0.2
176,448 - MPMX19_04780 0.83 -0.7
176,448 - MPMX19_04780 0.83 +1.7
176,448 - MPMX19_04780 0.83 +1.0
176,478 + MPMX19_04780 0.87 -1.2
176,478 + MPMX19_04780 0.87 -0.9
176,479 - MPMX19_04780 0.87 -0.3
176,479 - MPMX19_04780 0.87 -0.1
176,567 + -0.3
176,568 - -0.3
176,568 - -0.1
176,568 - -1.3
176,568 - +0.0
176,568 - -0.5
176,968 + MPMX19_04781 0.25 +0.3
176,969 - MPMX19_04781 0.25 +0.8
176,969 - MPMX19_04781 0.25 -1.2
176,969 - MPMX19_04781 0.25 +1.1
176,969 - MPMX19_04781 0.25 -1.2
176,969 - MPMX19_04781 0.25 +0.1
176,969 - MPMX19_04781 0.25 -0.3
176,969 - MPMX19_04781 0.25 -1.1
176,969 - MPMX19_04781 0.25 +1.3
176,969 - MPMX19_04781 0.25 -0.6
176,969 - MPMX19_04781 0.25 -1.1
176,969 - MPMX19_04781 0.25 -0.5
177,013 + MPMX19_04781 0.29 -1.1
177,013 + MPMX19_04781 0.29 -0.8
177,013 + MPMX19_04781 0.29 -1.1
177,013 + MPMX19_04781 0.29 -0.3
177,014 - MPMX19_04781 0.29 -0.8
177,014 - MPMX19_04781 0.29 +0.2
177,014 - MPMX19_04781 0.29 -0.4
177,519 + MPMX19_04781 0.76 -0.5
177,572 + MPMX19_04781 0.81 -0.5

Or see this region's nucleotide sequence