Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04613

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04612 and MPMX19_04613 are separated by 193 nucleotidesMPMX19_04613 and MPMX19_04614 are separated by 40 nucleotides MPMX19_04612: MPMX19_04612 - Crotonobetaine/carnitine--CoA ligase, at 997,269 to 998,903 _04612 MPMX19_04613: MPMX19_04613 - 4-chlorobenzoyl coenzyme A dehalogenase-2, at 999,097 to 999,837 _04613 MPMX19_04614: MPMX19_04614 - hypothetical protein, at 999,878 to 1,001,104 _04614 Position (kb) 999 1000Strain fitness (log2 ratio) -2 -1 0 1 2at 998.195 kb on - strand, within MPMX19_04612at 998.195 kb on - strand, within MPMX19_04612at 998.200 kb on + strand, within MPMX19_04612at 998.200 kb on + strand, within MPMX19_04612at 998.290 kb on + strand, within MPMX19_04612at 998.290 kb on + strand, within MPMX19_04612at 998.290 kb on + strand, within MPMX19_04612at 998.290 kb on + strand, within MPMX19_04612at 998.290 kb on + strand, within MPMX19_04612at 998.291 kb on - strand, within MPMX19_04612at 998.291 kb on - strand, within MPMX19_04612at 998.302 kb on + strand, within MPMX19_04612at 998.302 kb on + strand, within MPMX19_04612at 998.302 kb on + strand, within MPMX19_04612at 998.302 kb on + strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.303 kb on - strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.347 kb on + strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.348 kb on - strand, within MPMX19_04612at 998.514 kb on + strand, within MPMX19_04612at 998.514 kb on + strand, within MPMX19_04612at 998.514 kb on + strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.515 kb on - strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.582 kb on + strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.583 kb on - strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.626 kb on + strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.627 kb on - strand, within MPMX19_04612at 998.641 kb on + strand, within MPMX19_04612at 998.641 kb on + strand, within MPMX19_04612at 998.642 kb on - strand, within MPMX19_04612at 998.642 kb on - strand, within MPMX19_04612at 998.773 kb on + strandat 998.773 kb on + strandat 998.774 kb on - strandat 998.981 kb on + strandat 999.146 kb on - strandat 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.013 kb on + strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.014 kb on - strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.328 kb on + strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.329 kb on - strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.337 kb on + strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.338 kb on - strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.412 kb on + strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.413 kb on - strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.820 kb on + strand, within MPMX19_04614at 1000.821 kb on - strand, within MPMX19_04614at 1000.821 kb on - strand, within MPMX19_04614

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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998,195 - MPMX19_04612 0.57 +0.2
998,195 - MPMX19_04612 0.57 -0.0
998,200 + MPMX19_04612 0.57 -0.5
998,200 + MPMX19_04612 0.57 +1.0
998,290 + MPMX19_04612 0.62 -1.0
998,290 + MPMX19_04612 0.62 +1.0
998,290 + MPMX19_04612 0.62 -0.2
998,290 + MPMX19_04612 0.62 -0.4
998,290 + MPMX19_04612 0.62 -1.0
998,291 - MPMX19_04612 0.63 -0.6
998,291 - MPMX19_04612 0.63 +0.2
998,302 + MPMX19_04612 0.63 -1.0
998,302 + MPMX19_04612 0.63 +0.2
998,302 + MPMX19_04612 0.63 -1.5
998,302 + MPMX19_04612 0.63 +0.5
998,303 - MPMX19_04612 0.63 -1.0
998,303 - MPMX19_04612 0.63 -2.2
998,303 - MPMX19_04612 0.63 +1.0
998,303 - MPMX19_04612 0.63 +0.1
998,303 - MPMX19_04612 0.63 -1.0
998,303 - MPMX19_04612 0.63 +0.2
998,303 - MPMX19_04612 0.63 -0.8
998,303 - MPMX19_04612 0.63 -0.1
998,303 - MPMX19_04612 0.63 -1.3
998,303 - MPMX19_04612 0.63 +0.4
998,347 + MPMX19_04612 0.66 +0.4
998,347 + MPMX19_04612 0.66 -0.6
998,347 + MPMX19_04612 0.66 -0.5
998,347 + MPMX19_04612 0.66 +0.2
998,347 + MPMX19_04612 0.66 +1.0
998,347 + MPMX19_04612 0.66 -0.2
998,347 + MPMX19_04612 0.66 -0.6
998,347 + MPMX19_04612 0.66 -1.3
998,347 + MPMX19_04612 0.66 +0.6
998,348 - MPMX19_04612 0.66 +1.5
998,348 - MPMX19_04612 0.66 +0.1
998,348 - MPMX19_04612 0.66 +0.0
998,348 - MPMX19_04612 0.66 -1.9
998,348 - MPMX19_04612 0.66 -2.7
998,348 - MPMX19_04612 0.66 -0.2
998,348 - MPMX19_04612 0.66 -0.2
998,514 + MPMX19_04612 0.76 +1.4
998,514 + MPMX19_04612 0.76 -0.2
998,514 + MPMX19_04612 0.76 -0.8
998,515 - MPMX19_04612 0.76 -1.6
998,515 - MPMX19_04612 0.76 -0.4
998,515 - MPMX19_04612 0.76 -1.5
998,515 - MPMX19_04612 0.76 -1.0
998,515 - MPMX19_04612 0.76 +0.3
998,515 - MPMX19_04612 0.76 -0.9
998,515 - MPMX19_04612 0.76 -1.4
998,515 - MPMX19_04612 0.76 -0.5
998,582 + MPMX19_04612 0.80 +1.6
998,582 + MPMX19_04612 0.80 -0.2
998,582 + MPMX19_04612 0.80 -0.3
998,582 + MPMX19_04612 0.80 +0.5
998,582 + MPMX19_04612 0.80 +0.4
998,582 + MPMX19_04612 0.80 -0.4
998,582 + MPMX19_04612 0.80 -0.7
998,582 + MPMX19_04612 0.80 -1.2
998,582 + MPMX19_04612 0.80 -0.0
998,582 + MPMX19_04612 0.80 +0.4
998,582 + MPMX19_04612 0.80 -2.4
998,582 + MPMX19_04612 0.80 -0.4
998,582 + MPMX19_04612 0.80 -0.0
998,582 + MPMX19_04612 0.80 +0.7
998,582 + MPMX19_04612 0.80 -0.8
998,583 - MPMX19_04612 0.80 +0.3
998,583 - MPMX19_04612 0.80 -0.6
998,583 - MPMX19_04612 0.80 +0.3
998,583 - MPMX19_04612 0.80 +0.9
998,583 - MPMX19_04612 0.80 -0.5
998,583 - MPMX19_04612 0.80 -0.6
998,583 - MPMX19_04612 0.80 -0.8
998,583 - MPMX19_04612 0.80 +1.5
998,583 - MPMX19_04612 0.80 -0.1
998,583 - MPMX19_04612 0.80 +0.1
998,626 + MPMX19_04612 0.83 -0.2
998,626 + MPMX19_04612 0.83 -0.2
998,626 + MPMX19_04612 0.83 +0.4
998,626 + MPMX19_04612 0.83 -1.2
998,626 + MPMX19_04612 0.83 -1.7
998,626 + MPMX19_04612 0.83 -2.0
998,627 - MPMX19_04612 0.83 +0.0
998,627 - MPMX19_04612 0.83 -0.4
998,627 - MPMX19_04612 0.83 +1.4
998,627 - MPMX19_04612 0.83 +1.0
998,627 - MPMX19_04612 0.83 -1.2
998,627 - MPMX19_04612 0.83 -1.0
998,627 - MPMX19_04612 0.83 +1.4
998,627 - MPMX19_04612 0.83 -0.7
998,641 + MPMX19_04612 0.84 -0.4
998,641 + MPMX19_04612 0.84 -0.2
998,642 - MPMX19_04612 0.84 -1.9
998,642 - MPMX19_04612 0.84 +0.1
998,773 + -1.6
998,773 + -1.9
998,774 - -0.3
998,981 + +0.8
999,146 - -0.2
1,000,013 + MPMX19_04614 0.11 -0.7
1,000,013 + MPMX19_04614 0.11 -0.8
1,000,013 + MPMX19_04614 0.11 +1.2
1,000,013 + MPMX19_04614 0.11 -0.2
1,000,013 + MPMX19_04614 0.11 -1.0
1,000,013 + MPMX19_04614 0.11 -0.8
1,000,013 + MPMX19_04614 0.11 +1.0
1,000,013 + MPMX19_04614 0.11 -0.1
1,000,013 + MPMX19_04614 0.11 +0.4
1,000,013 + MPMX19_04614 0.11 -1.2
1,000,013 + MPMX19_04614 0.11 +1.2
1,000,014 - MPMX19_04614 0.11 -0.6
1,000,014 - MPMX19_04614 0.11 +0.2
1,000,014 - MPMX19_04614 0.11 -1.2
1,000,014 - MPMX19_04614 0.11 -0.2
1,000,014 - MPMX19_04614 0.11 +0.7
1,000,014 - MPMX19_04614 0.11 -0.5
1,000,014 - MPMX19_04614 0.11 +0.2
1,000,014 - MPMX19_04614 0.11 -0.2
1,000,014 - MPMX19_04614 0.11 +0.3
1,000,014 - MPMX19_04614 0.11 +0.2
1,000,014 - MPMX19_04614 0.11 -0.8
1,000,014 - MPMX19_04614 0.11 -1.9
1,000,014 - MPMX19_04614 0.11 -1.3
1,000,328 + MPMX19_04614 0.37 +0.4
1,000,328 + MPMX19_04614 0.37 +0.2
1,000,328 + MPMX19_04614 0.37 +0.5
1,000,328 + MPMX19_04614 0.37 +0.0
1,000,328 + MPMX19_04614 0.37 +1.8
1,000,328 + MPMX19_04614 0.37 -0.6
1,000,328 + MPMX19_04614 0.37 -0.8
1,000,328 + MPMX19_04614 0.37 -1.0
1,000,328 + MPMX19_04614 0.37 +2.4
1,000,328 + MPMX19_04614 0.37 -0.8
1,000,328 + MPMX19_04614 0.37 -0.6
1,000,328 + MPMX19_04614 0.37 +0.5
1,000,329 - MPMX19_04614 0.37 +1.0
1,000,329 - MPMX19_04614 0.37 -1.6
1,000,329 - MPMX19_04614 0.37 +0.5
1,000,329 - MPMX19_04614 0.37 -0.5
1,000,329 - MPMX19_04614 0.37 +0.4
1,000,329 - MPMX19_04614 0.37 -0.8
1,000,337 + MPMX19_04614 0.37 -0.7
1,000,337 + MPMX19_04614 0.37 -0.7
1,000,337 + MPMX19_04614 0.37 +1.4
1,000,337 + MPMX19_04614 0.37 +1.4
1,000,338 - MPMX19_04614 0.37 -0.2
1,000,338 - MPMX19_04614 0.37 +0.2
1,000,338 - MPMX19_04614 0.37 -0.3
1,000,412 + MPMX19_04614 0.44 -0.7
1,000,412 + MPMX19_04614 0.44 -0.9
1,000,412 + MPMX19_04614 0.44 -1.0
1,000,412 + MPMX19_04614 0.44 +1.8
1,000,412 + MPMX19_04614 0.44 -1.2
1,000,412 + MPMX19_04614 0.44 -0.1
1,000,412 + MPMX19_04614 0.44 +1.4
1,000,413 - MPMX19_04614 0.44 -2.1
1,000,413 - MPMX19_04614 0.44 +1.0
1,000,413 - MPMX19_04614 0.44 -0.2
1,000,413 - MPMX19_04614 0.44 +0.5
1,000,413 - MPMX19_04614 0.44 +1.6
1,000,413 - MPMX19_04614 0.44 +0.4
1,000,413 - MPMX19_04614 0.44 -1.8
1,000,820 + MPMX19_04614 0.77 -1.1
1,000,820 + MPMX19_04614 0.77 +0.2
1,000,820 + MPMX19_04614 0.77 -1.5
1,000,821 - MPMX19_04614 0.77 +0.1
1,000,821 - MPMX19_04614 0.77 +0.2

Or see this region's nucleotide sequence