Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03261

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03260 and MPMX19_03261 are separated by 73 nucleotidesMPMX19_03261 and MPMX19_03262 are separated by 185 nucleotides MPMX19_03260: MPMX19_03260 - HTH-type transcriptional regulator CdhR, at 601,228 to 602,280 _03260 MPMX19_03261: MPMX19_03261 - 4-hydroxyproline 2-epimerase 2, at 602,354 to 603,352 _03261 MPMX19_03262: MPMX19_03262 - putative HTH-type transcriptional repressor ExuR, at 603,538 to 604,521 _03262 Position (kb) 602 603 604Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 601.535 kb on - strand, within MPMX19_03260at 601.535 kb on - strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.597 kb on + strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.598 kb on - strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.708 kb on + strand, within MPMX19_03260at 601.709 kb on - strand, within MPMX19_03260at 601.709 kb on - strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.881 kb on + strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 601.882 kb on - strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.122 kb on + strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.123 kb on - strand, within MPMX19_03260at 602.125 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.146 kb on + strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.147 kb on - strand, within MPMX19_03260at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.527 kb on + strand, within MPMX19_03261at 602.528 kb on - strand, within MPMX19_03261at 602.528 kb on - strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.549 kb on + strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.550 kb on - strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.732 kb on + strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.733 kb on - strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.786 kb on + strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.787 kb on - strand, within MPMX19_03261at 602.845 kb on + strand, within MPMX19_03261at 602.846 kb on - strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.852 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.864 kb on + strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.865 kb on - strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.867 kb on + strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.868 kb on - strand, within MPMX19_03261at 602.938 kb on - strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.077 kb on + strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.078 kb on - strand, within MPMX19_03261at 603.245 kb on + strand, within MPMX19_03261at 603.246 kb on - strand, within MPMX19_03261at 603.303 kb on + strandat 603.304 kb on - strandat 603.394 kb on - strandat 603.857 kb on + strand, within MPMX19_03262at 603.858 kb on - strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.983 kb on + strand, within MPMX19_03262at 603.984 kb on - strand, within MPMX19_03262at 603.984 kb on - strand, within MPMX19_03262

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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601,535 - MPMX19_03260 0.29 +0.3
601,535 - MPMX19_03260 0.29 +0.0
601,597 + MPMX19_03260 0.35 -0.3
601,597 + MPMX19_03260 0.35 -0.3
601,597 + MPMX19_03260 0.35 +1.2
601,598 - MPMX19_03260 0.35 -0.5
601,598 - MPMX19_03260 0.35 -0.7
601,598 - MPMX19_03260 0.35 -1.0
601,598 - MPMX19_03260 0.35 -0.5
601,708 + MPMX19_03260 0.46 +1.0
601,708 + MPMX19_03260 0.46 -0.6
601,708 + MPMX19_03260 0.46 -2.0
601,709 - MPMX19_03260 0.46 -1.8
601,709 - MPMX19_03260 0.46 -0.5
601,881 + MPMX19_03260 0.62 -0.6
601,881 + MPMX19_03260 0.62 -0.2
601,881 + MPMX19_03260 0.62 -0.9
601,882 - MPMX19_03260 0.62 +0.3
601,882 - MPMX19_03260 0.62 +0.9
601,882 - MPMX19_03260 0.62 +0.2
601,882 - MPMX19_03260 0.62 +0.1
602,122 + MPMX19_03260 0.85 +1.2
602,122 + MPMX19_03260 0.85 +0.9
602,122 + MPMX19_03260 0.85 -0.3
602,123 - MPMX19_03260 0.85 +0.2
602,123 - MPMX19_03260 0.85 -0.8
602,123 - MPMX19_03260 0.85 -0.5
602,123 - MPMX19_03260 0.85 -0.4
602,123 - MPMX19_03260 0.85 +1.2
602,125 + MPMX19_03260 0.85 -0.2
602,146 + MPMX19_03260 0.87 -0.6
602,146 + MPMX19_03260 0.87 -1.2
602,146 + MPMX19_03260 0.87 -0.3
602,146 + MPMX19_03260 0.87 -1.2
602,146 + MPMX19_03260 0.87 -1.5
602,147 - MPMX19_03260 0.87 +0.0
602,147 - MPMX19_03260 0.87 -0.4
602,147 - MPMX19_03260 0.87 -1.5
602,147 - MPMX19_03260 0.87 -0.8
602,147 - MPMX19_03260 0.87 +0.5
602,527 + MPMX19_03261 0.17 -1.2
602,527 + MPMX19_03261 0.17 +0.7
602,527 + MPMX19_03261 0.17 -1.0
602,527 + MPMX19_03261 0.17 +0.1
602,527 + MPMX19_03261 0.17 -3.0
602,528 - MPMX19_03261 0.17 -0.6
602,528 - MPMX19_03261 0.17 -0.4
602,549 + MPMX19_03261 0.20 +0.8
602,549 + MPMX19_03261 0.20 -2.2
602,549 + MPMX19_03261 0.20 +0.2
602,549 + MPMX19_03261 0.20 -0.4
602,549 + MPMX19_03261 0.20 +0.6
602,550 - MPMX19_03261 0.20 -2.5
602,550 - MPMX19_03261 0.20 -1.0
602,550 - MPMX19_03261 0.20 +0.2
602,732 + MPMX19_03261 0.38 -1.5
602,732 + MPMX19_03261 0.38 -1.2
602,732 + MPMX19_03261 0.38 +0.2
602,733 - MPMX19_03261 0.38 +0.6
602,733 - MPMX19_03261 0.38 +0.7
602,733 - MPMX19_03261 0.38 +0.7
602,786 + MPMX19_03261 0.43 -0.8
602,786 + MPMX19_03261 0.43 -0.6
602,786 + MPMX19_03261 0.43 -0.5
602,787 - MPMX19_03261 0.43 -0.1
602,787 - MPMX19_03261 0.43 -0.5
602,787 - MPMX19_03261 0.43 -0.5
602,787 - MPMX19_03261 0.43 -0.2
602,845 + MPMX19_03261 0.49 +0.2
602,846 - MPMX19_03261 0.49 -2.5
602,852 + MPMX19_03261 0.50 -0.9
602,852 + MPMX19_03261 0.50 -1.0
602,864 + MPMX19_03261 0.51 -2.4
602,864 + MPMX19_03261 0.51 -0.4
602,864 + MPMX19_03261 0.51 +0.7
602,864 + MPMX19_03261 0.51 +1.9
602,865 - MPMX19_03261 0.51 +0.2
602,865 - MPMX19_03261 0.51 +2.5
602,865 - MPMX19_03261 0.51 +0.9
602,865 - MPMX19_03261 0.51 -1.9
602,867 + MPMX19_03261 0.51 -0.8
602,867 + MPMX19_03261 0.51 -0.3
602,867 + MPMX19_03261 0.51 -0.2
602,867 + MPMX19_03261 0.51 -0.1
602,867 + MPMX19_03261 0.51 +0.5
602,868 - MPMX19_03261 0.51 -1.8
602,868 - MPMX19_03261 0.51 +0.6
602,868 - MPMX19_03261 0.51 -0.8
602,868 - MPMX19_03261 0.51 -0.7
602,938 - MPMX19_03261 0.58 -0.5
603,077 + MPMX19_03261 0.72 -1.0
603,077 + MPMX19_03261 0.72 -0.2
603,078 - MPMX19_03261 0.72 -0.7
603,078 - MPMX19_03261 0.72 -1.4
603,245 + MPMX19_03261 0.89 +0.0
603,246 - MPMX19_03261 0.89 +1.2
603,303 + -0.6
603,304 - -0.6
603,394 - -1.4
603,857 + MPMX19_03262 0.32 +1.3
603,858 - MPMX19_03262 0.33 +0.5
603,983 + MPMX19_03262 0.45 +1.4
603,983 + MPMX19_03262 0.45 +0.9
603,983 + MPMX19_03262 0.45 -0.1
603,983 + MPMX19_03262 0.45 +0.2
603,984 - MPMX19_03262 0.45 +0.0
603,984 - MPMX19_03262 0.45 -0.9

Or see this region's nucleotide sequence