Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03106

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03105 and MPMX19_03106 are separated by 72 nucleotidesMPMX19_03106 and MPMX19_03107 are separated by 5 nucleotides MPMX19_03105: MPMX19_03105 - hypothetical protein, at 376,515 to 386,258 _03105 MPMX19_03106: MPMX19_03106 - hypothetical protein, at 386,331 to 387,962 _03106 MPMX19_03107: MPMX19_03107 - hypothetical protein, at 387,968 to 389,068 _03107 Position (kb) 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1at 385.638 kb on + strandat 385.639 kb on - strandat 385.983 kb on + strandat 386.082 kb on + strandat 386.082 kb on + strandat 386.083 kb on - strandat 386.083 kb on - strandat 386.257 kb on - strandat 386.430 kb on + strandat 386.430 kb on + strandat 386.431 kb on - strandat 386.431 kb on - strandat 386.431 kb on - strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.490 kb on + strandat 386.491 kb on - strandat 386.491 kb on - strandat 386.491 kb on - strandat 386.491 kb on - strandat 386.491 kb on - strandat 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.045 kb on + strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.046 kb on - strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.111 kb on + strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.112 kb on - strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.315 kb on + strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.316 kb on - strand, within MPMX19_03106at 387.331 kb on - strand, within MPMX19_03106at 387.331 kb on - strand, within MPMX19_03106at 387.444 kb on + strand, within MPMX19_03106at 387.848 kb on + strandat 387.849 kb on - strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.940 kb on + strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 387.941 kb on - strandat 388.193 kb on + strand, within MPMX19_03107at 388.194 kb on - strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.211 kb on + strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.212 kb on - strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.262 kb on + strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.263 kb on - strand, within MPMX19_03107at 388.265 kb on - strand, within MPMX19_03107at 388.265 kb on - strand, within MPMX19_03107at 388.571 kb on + strand, within MPMX19_03107at 388.572 kb on - strand, within MPMX19_03107at 388.572 kb on - strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.739 kb on + strand, within MPMX19_03107at 388.740 kb on - strand, within MPMX19_03107at 388.740 kb on - strand, within MPMX19_03107at 388.767 kb on - strand, within MPMX19_03107

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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385,638 + -1.8
385,639 - -0.8
385,983 + +0.1
386,082 + -2.3
386,082 + -0.2
386,083 - -1.5
386,083 - +0.2
386,257 - +1.0
386,430 + -0.4
386,430 + -0.9
386,431 - -0.2
386,431 - +1.3
386,431 - +0.7
386,490 + -1.5
386,490 + -0.3
386,490 + +0.1
386,490 + +0.8
386,490 + +0.0
386,490 + +0.3
386,490 + -3.1
386,491 - -1.1
386,491 - -0.7
386,491 - -2.1
386,491 - +0.9
386,491 - +0.0
387,045 + MPMX19_03106 0.44 -0.5
387,045 + MPMX19_03106 0.44 -0.0
387,045 + MPMX19_03106 0.44 -0.7
387,045 + MPMX19_03106 0.44 -1.3
387,045 + MPMX19_03106 0.44 -1.1
387,045 + MPMX19_03106 0.44 -0.3
387,045 + MPMX19_03106 0.44 -0.8
387,046 - MPMX19_03106 0.44 -2.5
387,046 - MPMX19_03106 0.44 +1.7
387,046 - MPMX19_03106 0.44 +0.7
387,046 - MPMX19_03106 0.44 +0.1
387,046 - MPMX19_03106 0.44 -1.2
387,046 - MPMX19_03106 0.44 +0.9
387,111 + MPMX19_03106 0.48 +1.4
387,111 + MPMX19_03106 0.48 +0.4
387,111 + MPMX19_03106 0.48 -1.1
387,111 + MPMX19_03106 0.48 -1.7
387,111 + MPMX19_03106 0.48 +0.2
387,111 + MPMX19_03106 0.48 -1.9
387,111 + MPMX19_03106 0.48 -1.0
387,111 + MPMX19_03106 0.48 -1.0
387,112 - MPMX19_03106 0.48 -0.5
387,112 - MPMX19_03106 0.48 -0.2
387,112 - MPMX19_03106 0.48 -0.1
387,112 - MPMX19_03106 0.48 +0.3
387,112 - MPMX19_03106 0.48 -1.4
387,112 - MPMX19_03106 0.48 +0.6
387,112 - MPMX19_03106 0.48 +0.2
387,315 + MPMX19_03106 0.60 -1.8
387,315 + MPMX19_03106 0.60 +0.3
387,315 + MPMX19_03106 0.60 +0.2
387,315 + MPMX19_03106 0.60 -0.7
387,315 + MPMX19_03106 0.60 -0.4
387,315 + MPMX19_03106 0.60 -0.5
387,315 + MPMX19_03106 0.60 -0.1
387,315 + MPMX19_03106 0.60 +0.3
387,315 + MPMX19_03106 0.60 -0.3
387,316 - MPMX19_03106 0.60 -0.1
387,316 - MPMX19_03106 0.60 +1.4
387,316 - MPMX19_03106 0.60 -1.5
387,316 - MPMX19_03106 0.60 +0.4
387,316 - MPMX19_03106 0.60 -0.0
387,316 - MPMX19_03106 0.60 +0.1
387,316 - MPMX19_03106 0.60 -0.9
387,316 - MPMX19_03106 0.60 -1.0
387,316 - MPMX19_03106 0.60 +1.7
387,316 - MPMX19_03106 0.60 -0.3
387,316 - MPMX19_03106 0.60 +0.1
387,316 - MPMX19_03106 0.60 -0.4
387,316 - MPMX19_03106 0.60 +0.2
387,331 - MPMX19_03106 0.61 -0.0
387,331 - MPMX19_03106 0.61 +0.7
387,444 + MPMX19_03106 0.68 -2.1
387,848 + -0.6
387,849 - +0.5
387,940 + -1.2
387,940 + -0.3
387,940 + -0.3
387,940 + -1.6
387,940 + -0.6
387,940 + +1.4
387,941 - -0.3
387,941 - +0.7
387,941 - -0.8
387,941 - +1.1
387,941 - +0.8
388,193 + MPMX19_03107 0.20 -0.6
388,194 - MPMX19_03107 0.21 -1.1
388,211 + MPMX19_03107 0.22 -0.1
388,211 + MPMX19_03107 0.22 +0.9
388,211 + MPMX19_03107 0.22 -0.7
388,211 + MPMX19_03107 0.22 -0.3
388,211 + MPMX19_03107 0.22 -0.3
388,211 + MPMX19_03107 0.22 +1.1
388,211 + MPMX19_03107 0.22 -0.7
388,212 - MPMX19_03107 0.22 -0.9
388,212 - MPMX19_03107 0.22 -0.7
388,212 - MPMX19_03107 0.22 +0.2
388,212 - MPMX19_03107 0.22 -0.1
388,262 + MPMX19_03107 0.27 +0.4
388,262 + MPMX19_03107 0.27 -0.2
388,262 + MPMX19_03107 0.27 -0.2
388,262 + MPMX19_03107 0.27 -0.2
388,262 + MPMX19_03107 0.27 +0.1
388,262 + MPMX19_03107 0.27 +0.5
388,262 + MPMX19_03107 0.27 -0.1
388,262 + MPMX19_03107 0.27 +0.3
388,263 - MPMX19_03107 0.27 -2.1
388,263 - MPMX19_03107 0.27 +0.2
388,263 - MPMX19_03107 0.27 -0.6
388,263 - MPMX19_03107 0.27 -0.3
388,263 - MPMX19_03107 0.27 +0.3
388,263 - MPMX19_03107 0.27 -0.7
388,263 - MPMX19_03107 0.27 -1.0
388,263 - MPMX19_03107 0.27 +0.0
388,265 - MPMX19_03107 0.27 -1.3
388,265 - MPMX19_03107 0.27 -0.7
388,571 + MPMX19_03107 0.55 -0.7
388,572 - MPMX19_03107 0.55 -1.2
388,572 - MPMX19_03107 0.55 -2.0
388,739 + MPMX19_03107 0.70 +0.1
388,739 + MPMX19_03107 0.70 +0.2
388,739 + MPMX19_03107 0.70 -0.0
388,739 + MPMX19_03107 0.70 -1.5
388,739 + MPMX19_03107 0.70 +1.0
388,740 - MPMX19_03107 0.70 -0.4
388,740 - MPMX19_03107 0.70 -0.8
388,767 - MPMX19_03107 0.73 +0.4

Or see this region's nucleotide sequence