Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02880 and MPMX19_02881 are separated by 13 nucleotides MPMX19_02881 and MPMX19_02882 are separated by 109 nucleotides
MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658
_02880
MPMX19_02881: MPMX19_02881 - hypothetical protein, at 131,672 to 132,157
_02881
MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157
_02882
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 131.638 kb on + strand at 131.673 kb on + strand at 131.778 kb on + strand, within MPMX19_02881 at 131.778 kb on + strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 132.200 kb on + strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.228 kb on - strand at 132.228 kb on - strand at 132.250 kb on + strand at 132.250 kb on + strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.266 kb on + strand at 132.266 kb on + strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.517 kb on - strand, within MPMX19_02882 at 132.553 kb on - strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.741 kb on + strand, within MPMX19_02882 at 132.742 kb on - strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.774 kb on + strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.775 kb on - strand, within MPMX19_02882 at 132.776 kb on + strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.777 kb on - strand, within MPMX19_02882 at 132.954 kb on + strand, within MPMX19_02882 at 132.954 kb on + strand, within MPMX19_02882 at 132.955 kb on - strand, within MPMX19_02882 at 132.955 kb on - strand, within MPMX19_02882 at 133.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 130,693 + MPMX19_02880 0.13 -0.6 130,693 + MPMX19_02880 0.13 -1.7 130,693 + MPMX19_02880 0.13 -0.2 130,693 + MPMX19_02880 0.13 -0.6 130,693 + MPMX19_02880 0.13 -1.3 130,693 + MPMX19_02880 0.13 +1.4 130,693 + MPMX19_02880 0.13 -0.0 130,693 + MPMX19_02880 0.13 -0.8 130,693 + MPMX19_02880 0.13 -0.1 130,693 + MPMX19_02880 0.13 -0.6 130,693 + MPMX19_02880 0.13 -0.5 130,693 + MPMX19_02880 0.13 -1.7 130,693 + MPMX19_02880 0.13 -0.0 130,694 - MPMX19_02880 0.13 +0.2 130,694 - MPMX19_02880 0.13 +0.3 130,694 - MPMX19_02880 0.13 -0.2 130,694 - MPMX19_02880 0.13 +0.4 130,694 - MPMX19_02880 0.13 -1.7 130,694 - MPMX19_02880 0.13 +0.1 130,694 - MPMX19_02880 0.13 +0.1 130,694 - MPMX19_02880 0.13 +0.7 130,694 - MPMX19_02880 0.13 +0.3 130,694 - MPMX19_02880 0.13 -1.3 130,694 - MPMX19_02880 0.13 -0.6 131,638 + -0.9 131,673 + -0.5 131,778 + MPMX19_02881 0.22 -0.7 131,778 + MPMX19_02881 0.22 -1.0 131,779 - MPMX19_02881 0.22 -1.7 131,779 - MPMX19_02881 0.22 -0.9 131,779 - MPMX19_02881 0.22 -0.9 131,838 + MPMX19_02881 0.34 -1.3 131,838 + MPMX19_02881 0.34 +0.1 131,838 + MPMX19_02881 0.34 -0.9 131,838 + MPMX19_02881 0.34 -1.3 131,839 - MPMX19_02881 0.34 -1.7 131,839 - MPMX19_02881 0.34 -0.9 131,839 - MPMX19_02881 0.34 -0.8 131,839 - MPMX19_02881 0.34 -2.0 131,839 - MPMX19_02881 0.34 -0.5 131,839 - MPMX19_02881 0.34 -1.5 131,839 - MPMX19_02881 0.34 +0.8 132,200 + +1.7 132,227 + +0.4 132,227 + -0.0 132,228 - -0.0 132,228 - -1.0 132,250 + -1.3 132,250 + -2.2 132,251 - -1.2 132,251 - +0.2 132,251 - -1.0 132,266 + -1.8 132,266 + -0.1 132,267 - -0.9 132,267 - -0.7 132,267 - -1.0 132,360 + MPMX19_02882 0.10 +1.2 132,360 + MPMX19_02882 0.10 -0.7 132,360 + MPMX19_02882 0.10 -0.7 132,360 + MPMX19_02882 0.10 -0.1 132,360 + MPMX19_02882 0.10 -0.2 132,360 + MPMX19_02882 0.10 -1.5 132,360 + MPMX19_02882 0.10 -0.9 132,361 - MPMX19_02882 0.11 +0.7 132,361 - MPMX19_02882 0.11 +0.6 132,361 - MPMX19_02882 0.11 +0.1 132,516 + MPMX19_02882 0.28 -0.8 132,516 + MPMX19_02882 0.28 +1.1 132,516 + MPMX19_02882 0.28 -0.9 132,516 + MPMX19_02882 0.28 -0.2 132,516 + MPMX19_02882 0.28 +0.1 132,517 - MPMX19_02882 0.28 -0.9 132,553 - MPMX19_02882 0.32 -0.7 132,741 + MPMX19_02882 0.53 -0.2 132,741 + MPMX19_02882 0.53 -1.5 132,741 + MPMX19_02882 0.53 -0.7 132,742 - MPMX19_02882 0.53 +2.5 132,774 + MPMX19_02882 0.57 -0.9 132,774 + MPMX19_02882 0.57 +0.2 132,774 + MPMX19_02882 0.57 -0.9 132,774 + MPMX19_02882 0.57 -0.9 132,774 + MPMX19_02882 0.57 +0.1 132,774 + MPMX19_02882 0.57 +0.9 132,774 + MPMX19_02882 0.57 -1.1 132,774 + MPMX19_02882 0.57 -1.2 132,774 + MPMX19_02882 0.57 -1.9 132,775 - MPMX19_02882 0.57 -1.3 132,775 - MPMX19_02882 0.57 -0.6 132,775 - MPMX19_02882 0.57 +0.6 132,775 - MPMX19_02882 0.57 -0.9 132,775 - MPMX19_02882 0.57 +0.7 132,775 - MPMX19_02882 0.57 -0.8 132,775 - MPMX19_02882 0.57 +1.2 132,775 - MPMX19_02882 0.57 +0.1 132,775 - MPMX19_02882 0.57 -0.3 132,775 - MPMX19_02882 0.57 -1.8 132,775 - MPMX19_02882 0.57 +0.1 132,776 + MPMX19_02882 0.57 -1.8 132,777 - MPMX19_02882 0.57 +0.1 132,777 - MPMX19_02882 0.57 -0.3 132,777 - MPMX19_02882 0.57 -1.3 132,777 - MPMX19_02882 0.57 +1.7 132,954 + MPMX19_02882 0.77 -1.8 132,954 + MPMX19_02882 0.77 +0.8 132,955 - MPMX19_02882 0.77 +1.9 132,955 - MPMX19_02882 0.77 -0.2 133,155 + -0.2
Or see this region's nucleotide sequence