Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02848

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02847 and MPMX19_02848 are separated by 74 nucleotidesMPMX19_02848 and MPMX19_02849 are separated by 49 nucleotidesMPMX19_02849 and MPMX19_02850 are separated by 116 nucleotides MPMX19_02847: MPMX19_02847 - Acetate kinase, at 89,710 to 90,936 _02847 MPMX19_02848: MPMX19_02848 - Riboflavin transporter, at 91,011 to 91,961 _02848 MPMX19_02849: MPMX19_02849 - Phosphoglycerate kinase, at 92,011 to 92,769 _02849 MPMX19_02850: MPMX19_02850 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 92,886 to 93,908 _02850 Position (kb) 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 90.151 kb on + strand, within MPMX19_02847at 90.266 kb on - strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.539 kb on - strand, within MPMX19_02847at 90.934 kb on + strandat 90.935 kb on - strandat 90.935 kb on - strandat 91.026 kb on - strandat 91.141 kb on - strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.308 kb on + strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.309 kb on - strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.347 kb on + strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.348 kb on - strand, within MPMX19_02848at 91.521 kb on + strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.522 kb on - strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.587 kb on + strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.588 kb on - strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.707 kb on + strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.708 kb on - strand, within MPMX19_02848at 91.726 kb on - strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.764 kb on + strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.765 kb on - strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.779 kb on + strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.780 kb on - strand, within MPMX19_02848at 91.878 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.016 kb on + strandat 92.017 kb on - strandat 92.017 kb on - strandat 92.554 kb on + strand, within MPMX19_02849at 92.788 kb on - strandat 92.788 kb on - strandat 92.893 kb on + strandat 92.894 kb on - strandat 92.894 kb on - strandat 92.950 kb on - strandat 92.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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90,151 + MPMX19_02847 0.36 +0.0
90,266 - MPMX19_02847 0.45 -0.5
90,286 + MPMX19_02847 0.47 -1.7
90,286 + MPMX19_02847 0.47 -1.6
90,287 - MPMX19_02847 0.47 -0.9
90,287 - MPMX19_02847 0.47 -0.7
90,292 + MPMX19_02847 0.47 -1.2
90,292 + MPMX19_02847 0.47 +0.1
90,292 + MPMX19_02847 0.47 -0.9
90,292 + MPMX19_02847 0.47 +0.3
90,292 + MPMX19_02847 0.47 -0.1
90,292 + MPMX19_02847 0.47 -0.2
90,292 + MPMX19_02847 0.47 -0.6
90,293 - MPMX19_02847 0.48 -0.1
90,293 - MPMX19_02847 0.48 -0.2
90,293 - MPMX19_02847 0.48 +0.4
90,487 + MPMX19_02847 0.63 -1.1
90,487 + MPMX19_02847 0.63 -1.3
90,488 - MPMX19_02847 0.63 -0.0
90,488 - MPMX19_02847 0.63 +1.4
90,488 - MPMX19_02847 0.63 +0.2
90,488 - MPMX19_02847 0.63 -0.5
90,488 - MPMX19_02847 0.63 +1.1
90,488 - MPMX19_02847 0.63 -1.3
90,488 - MPMX19_02847 0.63 -0.5
90,488 - MPMX19_02847 0.63 -1.3
90,488 - MPMX19_02847 0.63 -0.2
90,488 - MPMX19_02847 0.63 +0.1
90,509 - MPMX19_02847 0.65 -0.4
90,509 - MPMX19_02847 0.65 -3.3
90,538 + MPMX19_02847 0.67 +0.6
90,538 + MPMX19_02847 0.67 +0.9
90,538 + MPMX19_02847 0.67 -0.4
90,539 - MPMX19_02847 0.68 -0.4
90,934 + -0.9
90,935 - -0.1
90,935 - -0.0
91,026 - -0.3
91,141 - MPMX19_02848 0.14 -0.2
91,308 + MPMX19_02848 0.31 +0.2
91,308 + MPMX19_02848 0.31 +0.0
91,308 + MPMX19_02848 0.31 -2.0
91,308 + MPMX19_02848 0.31 -1.5
91,308 + MPMX19_02848 0.31 -0.1
91,309 - MPMX19_02848 0.31 -0.4
91,309 - MPMX19_02848 0.31 +1.1
91,309 - MPMX19_02848 0.31 +0.7
91,309 - MPMX19_02848 0.31 -0.1
91,309 - MPMX19_02848 0.31 -1.4
91,347 + MPMX19_02848 0.35 -2.4
91,347 + MPMX19_02848 0.35 -0.9
91,347 + MPMX19_02848 0.35 -0.5
91,348 - MPMX19_02848 0.35 -0.8
91,348 - MPMX19_02848 0.35 +0.2
91,521 + MPMX19_02848 0.54 -0.2
91,522 - MPMX19_02848 0.54 +0.1
91,522 - MPMX19_02848 0.54 +0.1
91,587 + MPMX19_02848 0.61 -0.5
91,587 + MPMX19_02848 0.61 +0.4
91,587 + MPMX19_02848 0.61 +0.3
91,587 + MPMX19_02848 0.61 +0.1
91,587 + MPMX19_02848 0.61 -0.3
91,588 - MPMX19_02848 0.61 -0.9
91,588 - MPMX19_02848 0.61 -0.3
91,588 - MPMX19_02848 0.61 -1.2
91,588 - MPMX19_02848 0.61 +0.4
91,707 + MPMX19_02848 0.73 +0.1
91,707 + MPMX19_02848 0.73 -0.9
91,707 + MPMX19_02848 0.73 -1.2
91,707 + MPMX19_02848 0.73 -0.1
91,707 + MPMX19_02848 0.73 +0.2
91,707 + MPMX19_02848 0.73 +0.0
91,707 + MPMX19_02848 0.73 +1.0
91,708 - MPMX19_02848 0.73 -1.2
91,708 - MPMX19_02848 0.73 +1.0
91,708 - MPMX19_02848 0.73 -1.2
91,708 - MPMX19_02848 0.73 -0.3
91,726 - MPMX19_02848 0.75 -0.3
91,764 + MPMX19_02848 0.79 +0.2
91,764 + MPMX19_02848 0.79 +0.9
91,764 + MPMX19_02848 0.79 +1.4
91,764 + MPMX19_02848 0.79 +0.2
91,765 - MPMX19_02848 0.79 -1.8
91,765 - MPMX19_02848 0.79 +1.7
91,765 - MPMX19_02848 0.79 -0.2
91,765 - MPMX19_02848 0.79 -1.0
91,765 - MPMX19_02848 0.79 -1.3
91,765 - MPMX19_02848 0.79 -0.3
91,765 - MPMX19_02848 0.79 -0.3
91,765 - MPMX19_02848 0.79 +0.2
91,779 + MPMX19_02848 0.81 -0.9
91,779 + MPMX19_02848 0.81 +0.7
91,780 - MPMX19_02848 0.81 -1.2
91,780 - MPMX19_02848 0.81 -0.0
91,780 - MPMX19_02848 0.81 -0.0
91,780 - MPMX19_02848 0.81 +0.1
91,780 - MPMX19_02848 0.81 -0.1
91,878 + -0.6
92,016 + -0.3
92,016 + -0.5
92,016 + -0.2
92,016 + -0.9
92,016 + -1.8
92,016 + +0.8
92,017 - -0.3
92,017 - +0.8
92,554 + MPMX19_02849 0.72 -0.9
92,788 - -1.5
92,788 - -3.0
92,893 + -1.2
92,894 - -1.2
92,894 - -1.6
92,950 - +1.4
92,950 - -0.4

Or see this region's nucleotide sequence