Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02480 and MPMX19_02481 are separated by 22 nucleotides MPMX19_02481 and MPMX19_02482 are separated by 27 nucleotides
MPMX19_02480: MPMX19_02480 - Carboxylesterase A, at 2,600,492 to 2,601,985
_02480
MPMX19_02481: MPMX19_02481 - hypothetical protein, at 2,602,008 to 2,602,262
_02481
MPMX19_02482: MPMX19_02482 - Competence protein ComM, at 2,602,290 to 2,603,822
_02482
Position (kb)
2602
2603 Strain fitness (log2 ratio)
-2
-1
0
1 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.119 kb on + strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.120 kb on - strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.194 kb on + strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.195 kb on - strand, within MPMX19_02480 at 2601.248 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.503 kb on + strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.504 kb on - strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.641 kb on + strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.642 kb on - strand, within MPMX19_02480 at 2601.650 kb on + strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.651 kb on - strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.776 kb on + strand, within MPMX19_02480 at 2601.777 kb on - strand, within MPMX19_02480 at 2601.983 kb on + strand at 2601.983 kb on + strand at 2601.984 kb on - strand at 2601.984 kb on - strand at 2602.307 kb on + strand at 2602.307 kb on + strand at 2602.315 kb on + strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.316 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.406 kb on - strand at 2602.540 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.558 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.717 kb on + strand, within MPMX19_02482 at 2602.718 kb on - strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.822 kb on + strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2602.823 kb on - strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.026 kb on + strand, within MPMX19_02482 at 2603.027 kb on - strand, within MPMX19_02482 at 2603.027 kb on - strand, within MPMX19_02482
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,601,119 + MPMX19_02480 0.42 +0.3 2,601,119 + MPMX19_02480 0.42 +0.4 2,601,119 + MPMX19_02480 0.42 -1.6 2,601,119 + MPMX19_02480 0.42 -0.2 2,601,119 + MPMX19_02480 0.42 +0.3 2,601,119 + MPMX19_02480 0.42 -0.4 2,601,120 - MPMX19_02480 0.42 -1.5 2,601,120 - MPMX19_02480 0.42 -0.9 2,601,120 - MPMX19_02480 0.42 -0.7 2,601,120 - MPMX19_02480 0.42 -0.5 2,601,120 - MPMX19_02480 0.42 +0.8 2,601,120 - MPMX19_02480 0.42 -1.5 2,601,120 - MPMX19_02480 0.42 +1.3 2,601,194 + MPMX19_02480 0.47 +0.3 2,601,194 + MPMX19_02480 0.47 +0.3 2,601,194 + MPMX19_02480 0.47 -0.2 2,601,194 + MPMX19_02480 0.47 +1.4 2,601,194 + MPMX19_02480 0.47 -0.2 2,601,195 - MPMX19_02480 0.47 +0.6 2,601,195 - MPMX19_02480 0.47 -1.1 2,601,248 + MPMX19_02480 0.51 -1.2 2,601,503 + MPMX19_02480 0.68 -1.0 2,601,503 + MPMX19_02480 0.68 -1.9 2,601,503 + MPMX19_02480 0.68 -1.7 2,601,503 + MPMX19_02480 0.68 +0.3 2,601,503 + MPMX19_02480 0.68 -0.0 2,601,503 + MPMX19_02480 0.68 +0.0 2,601,503 + MPMX19_02480 0.68 -0.2 2,601,503 + MPMX19_02480 0.68 +0.7 2,601,504 - MPMX19_02480 0.68 -1.2 2,601,504 - MPMX19_02480 0.68 -1.2 2,601,504 - MPMX19_02480 0.68 -0.4 2,601,641 + MPMX19_02480 0.77 -0.3 2,601,641 + MPMX19_02480 0.77 -1.6 2,601,641 + MPMX19_02480 0.77 -0.6 2,601,641 + MPMX19_02480 0.77 -2.0 2,601,642 - MPMX19_02480 0.77 -1.6 2,601,642 - MPMX19_02480 0.77 -1.0 2,601,642 - MPMX19_02480 0.77 +1.4 2,601,650 + MPMX19_02480 0.78 +0.4 2,601,651 - MPMX19_02480 0.78 -0.5 2,601,651 - MPMX19_02480 0.78 -2.0 2,601,776 + MPMX19_02480 0.86 -0.2 2,601,776 + MPMX19_02480 0.86 -0.3 2,601,776 + MPMX19_02480 0.86 +0.0 2,601,776 + MPMX19_02480 0.86 -1.0 2,601,776 + MPMX19_02480 0.86 -1.2 2,601,776 + MPMX19_02480 0.86 -1.5 2,601,776 + MPMX19_02480 0.86 -1.2 2,601,777 - MPMX19_02480 0.86 -1.2 2,601,983 + +0.1 2,601,983 + +1.3 2,601,984 - +1.2 2,601,984 - -0.2 2,602,307 + +0.0 2,602,307 + -1.3 2,602,315 + -0.7 2,602,316 - -0.2 2,602,316 - -1.0 2,602,316 - +0.7 2,602,406 - +0.3 2,602,406 - -1.9 2,602,406 - +0.8 2,602,406 - +0.1 2,602,540 + MPMX19_02482 0.16 -0.2 2,602,558 + MPMX19_02482 0.17 -0.7 2,602,558 + MPMX19_02482 0.17 +1.0 2,602,558 + MPMX19_02482 0.17 -0.2 2,602,717 + MPMX19_02482 0.28 +1.4 2,602,717 + MPMX19_02482 0.28 +1.3 2,602,718 - MPMX19_02482 0.28 -0.7 2,602,822 + MPMX19_02482 0.35 +0.3 2,602,822 + MPMX19_02482 0.35 +0.8 2,602,822 + MPMX19_02482 0.35 -0.0 2,602,823 - MPMX19_02482 0.35 +0.5 2,602,823 - MPMX19_02482 0.35 -0.7 2,602,823 - MPMX19_02482 0.35 -0.6 2,602,823 - MPMX19_02482 0.35 -0.2 2,602,823 - MPMX19_02482 0.35 -0.1 2,602,823 - MPMX19_02482 0.35 -1.6 2,602,823 - MPMX19_02482 0.35 -0.2 2,602,823 - MPMX19_02482 0.35 -1.6 2,602,823 - MPMX19_02482 0.35 +0.5 2,602,823 - MPMX19_02482 0.35 +0.0 2,602,823 - MPMX19_02482 0.35 -0.7 2,603,026 + MPMX19_02482 0.48 -0.7 2,603,026 + MPMX19_02482 0.48 -1.3 2,603,026 + MPMX19_02482 0.48 -0.5 2,603,027 - MPMX19_02482 0.48 +0.8 2,603,027 - MPMX19_02482 0.48 +0.3
Or see this region's nucleotide sequence