Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06106

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06105 and MPMX19_06106 are separated by 42 nucleotidesMPMX19_06106 and MPMX19_06107 are separated by 206 nucleotidesMPMX19_06107 and MPMX19_06108 overlap by 4 nucleotides MPMX19_06105: MPMX19_06105 - Beta-barrel assembly-enhancing protease, at 288,767 to 290,482 _06105 MPMX19_06106: MPMX19_06106 - Bacteriohemerythrin, at 290,525 to 290,929 _06106 MPMX19_06107: MPMX19_06107 - hypothetical protein, at 291,136 to 291,888 _06107 MPMX19_06108: MPMX19_06108 - Cocaine esterase, at 291,885 to 293,540 _06108 Position (kb) 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.751 kb on + strand, within MPMX19_06105at 289.751 kb on + strand, within MPMX19_06105at 289.751 kb on + strand, within MPMX19_06105at 289.751 kb on + strand, within MPMX19_06105at 289.752 kb on - strand, within MPMX19_06105at 289.886 kb on - strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.916 kb on + strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.917 kb on - strand, within MPMX19_06105at 289.922 kb on + strand, within MPMX19_06105at 289.922 kb on + strand, within MPMX19_06105at 289.923 kb on - strand, within MPMX19_06105at 289.923 kb on - strand, within MPMX19_06105at 289.935 kb on - strand, within MPMX19_06105at 289.955 kb on + strand, within MPMX19_06105at 289.955 kb on + strand, within MPMX19_06105at 289.955 kb on + strand, within MPMX19_06105at 289.955 kb on + strand, within MPMX19_06105at 289.956 kb on - strand, within MPMX19_06105at 289.956 kb on - strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.012 kb on + strand, within MPMX19_06105at 290.013 kb on - strand, within MPMX19_06105at 290.013 kb on - strand, within MPMX19_06105at 290.126 kb on + strand, within MPMX19_06105at 290.126 kb on + strand, within MPMX19_06105at 290.127 kb on - strand, within MPMX19_06105at 290.127 kb on - strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.210 kb on + strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.211 kb on - strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.240 kb on + strand, within MPMX19_06105at 290.241 kb on - strand, within MPMX19_06105at 290.241 kb on - strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.255 kb on + strand, within MPMX19_06105at 290.256 kb on - strand, within MPMX19_06105at 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.339 kb on + strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.340 kb on - strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.526 kb on + strandat 290.527 kb on - strandat 290.527 kb on - strandat 290.527 kb on - strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.544 kb on + strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.545 kb on - strandat 290.553 kb on + strandat 290.553 kb on + strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.554 kb on - strandat 290.682 kb on + strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.683 kb on - strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.769 kb on + strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.770 kb on - strand, within MPMX19_06106at 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.922 kb on + strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 290.923 kb on - strandat 291.034 kb on + strandat 291.034 kb on + strandat 291.034 kb on + strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.035 kb on - strandat 291.272 kb on - strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.302 kb on + strand, within MPMX19_06107at 291.303 kb on - strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.457 kb on + strand, within MPMX19_06107at 291.458 kb on - strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.487 kb on + strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.488 kb on - strand, within MPMX19_06107at 291.748 kb on + strand, within MPMX19_06107at 291.748 kb on + strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.749 kb on - strand, within MPMX19_06107at 291.886 kb on + strandat 291.886 kb on + strandat 291.886 kb on + strandat 291.886 kb on + strandat 291.887 kb on - strandat 291.887 kb on - strandat 291.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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289,751 + MPMX19_06105 0.57 -0.8
289,751 + MPMX19_06105 0.57 +0.4
289,751 + MPMX19_06105 0.57 +0.6
289,751 + MPMX19_06105 0.57 -0.5
289,752 - MPMX19_06105 0.57 -0.3
289,886 - MPMX19_06105 0.65 +0.8
289,916 + MPMX19_06105 0.67 -1.2
289,916 + MPMX19_06105 0.67 +0.5
289,916 + MPMX19_06105 0.67 +1.5
289,916 + MPMX19_06105 0.67 -0.9
289,916 + MPMX19_06105 0.67 -0.1
289,916 + MPMX19_06105 0.67 -1.0
289,916 + MPMX19_06105 0.67 -0.4
289,916 + MPMX19_06105 0.67 -0.5
289,916 + MPMX19_06105 0.67 +0.5
289,916 + MPMX19_06105 0.67 +0.1
289,916 + MPMX19_06105 0.67 -0.2
289,916 + MPMX19_06105 0.67 -1.2
289,917 - MPMX19_06105 0.67 -1.0
289,917 - MPMX19_06105 0.67 -1.5
289,917 - MPMX19_06105 0.67 +0.6
289,917 - MPMX19_06105 0.67 +1.4
289,917 - MPMX19_06105 0.67 -1.4
289,917 - MPMX19_06105 0.67 -0.2
289,917 - MPMX19_06105 0.67 -0.0
289,917 - MPMX19_06105 0.67 -2.0
289,917 - MPMX19_06105 0.67 +1.5
289,917 - MPMX19_06105 0.67 -0.4
289,917 - MPMX19_06105 0.67 -1.2
289,917 - MPMX19_06105 0.67 +1.3
289,922 + MPMX19_06105 0.67 -0.5
289,922 + MPMX19_06105 0.67 -0.5
289,923 - MPMX19_06105 0.67 -0.6
289,923 - MPMX19_06105 0.67 -0.3
289,935 - MPMX19_06105 0.68 -0.2
289,955 + MPMX19_06105 0.69 -0.7
289,955 + MPMX19_06105 0.69 -0.5
289,955 + MPMX19_06105 0.69 -0.1
289,955 + MPMX19_06105 0.69 -0.3
289,956 - MPMX19_06105 0.69 -0.4
289,956 - MPMX19_06105 0.69 +1.0
290,012 + MPMX19_06105 0.73 +0.1
290,012 + MPMX19_06105 0.73 -1.0
290,012 + MPMX19_06105 0.73 -0.8
290,012 + MPMX19_06105 0.73 +0.1
290,012 + MPMX19_06105 0.73 -0.8
290,012 + MPMX19_06105 0.73 -0.4
290,012 + MPMX19_06105 0.73 -0.4
290,013 - MPMX19_06105 0.73 -1.4
290,013 - MPMX19_06105 0.73 -0.0
290,126 + MPMX19_06105 0.79 +1.5
290,126 + MPMX19_06105 0.79 -0.3
290,127 - MPMX19_06105 0.79 +0.3
290,127 - MPMX19_06105 0.79 +0.3
290,210 + MPMX19_06105 0.84 -1.7
290,210 + MPMX19_06105 0.84 -0.8
290,210 + MPMX19_06105 0.84 -0.1
290,210 + MPMX19_06105 0.84 -1.7
290,210 + MPMX19_06105 0.84 -1.4
290,210 + MPMX19_06105 0.84 -1.5
290,210 + MPMX19_06105 0.84 -0.8
290,210 + MPMX19_06105 0.84 +0.2
290,210 + MPMX19_06105 0.84 -0.4
290,210 + MPMX19_06105 0.84 +0.2
290,211 - MPMX19_06105 0.84 -1.5
290,211 - MPMX19_06105 0.84 +1.8
290,211 - MPMX19_06105 0.84 +0.2
290,211 - MPMX19_06105 0.84 -0.5
290,211 - MPMX19_06105 0.84 -0.6
290,211 - MPMX19_06105 0.84 -0.4
290,211 - MPMX19_06105 0.84 +1.4
290,211 - MPMX19_06105 0.84 -0.7
290,211 - MPMX19_06105 0.84 -0.2
290,240 + MPMX19_06105 0.86 -1.1
290,240 + MPMX19_06105 0.86 +0.8
290,240 + MPMX19_06105 0.86 -1.0
290,240 + MPMX19_06105 0.86 +0.8
290,240 + MPMX19_06105 0.86 -1.7
290,240 + MPMX19_06105 0.86 -1.5
290,241 - MPMX19_06105 0.86 +1.4
290,241 - MPMX19_06105 0.86 -0.4
290,255 + MPMX19_06105 0.87 +0.6
290,255 + MPMX19_06105 0.87 +1.1
290,255 + MPMX19_06105 0.87 -0.4
290,256 - MPMX19_06105 0.87 +0.6
290,339 + -0.0
290,339 + -1.0
290,339 + +0.5
290,339 + -1.0
290,339 + +0.3
290,340 - -0.7
290,340 - +0.8
290,340 - -0.8
290,340 - +0.3
290,526 + -0.7
290,526 + -2.2
290,526 + +0.2
290,526 + -0.2
290,526 + -0.8
290,526 + +0.8
290,526 + +1.0
290,526 + +0.1
290,526 + +0.2
290,527 - +0.2
290,527 - -0.3
290,527 - +0.2
290,544 + -0.6
290,544 + -1.4
290,544 + -0.1
290,544 + -0.4
290,544 + -1.2
290,545 - +0.5
290,545 - +0.4
290,545 - +0.1
290,545 - +0.3
290,545 - -1.4
290,545 - -0.4
290,545 - +1.0
290,545 - -0.0
290,553 + +0.4
290,553 + +0.9
290,554 - -0.9
290,554 - -0.4
290,554 - +0.3
290,554 - -0.0
290,554 - -1.1
290,554 - -1.9
290,554 - -0.1
290,682 + MPMX19_06106 0.39 -0.8
290,683 - MPMX19_06106 0.39 -0.2
290,683 - MPMX19_06106 0.39 -2.7
290,683 - MPMX19_06106 0.39 -1.9
290,683 - MPMX19_06106 0.39 -0.1
290,769 + MPMX19_06106 0.60 -1.0
290,769 + MPMX19_06106 0.60 +0.8
290,769 + MPMX19_06106 0.60 -0.9
290,769 + MPMX19_06106 0.60 -1.1
290,769 + MPMX19_06106 0.60 +0.1
290,769 + MPMX19_06106 0.60 -1.2
290,769 + MPMX19_06106 0.60 +0.1
290,770 - MPMX19_06106 0.60 -0.8
290,770 - MPMX19_06106 0.60 -0.1
290,770 - MPMX19_06106 0.60 -1.4
290,770 - MPMX19_06106 0.60 -0.4
290,770 - MPMX19_06106 0.60 +0.2
290,922 + -0.1
290,922 + -1.2
290,922 + -0.1
290,922 + -0.8
290,922 + +0.2
290,922 + +0.2
290,922 + -0.7
290,922 + -0.9
290,922 + -1.0
290,922 + -1.6
290,922 + +0.3
290,922 + +0.9
290,922 + -0.5
290,922 + -2.1
290,922 + -0.9
290,922 + -0.3
290,922 + -0.0
290,922 + +0.7
290,922 + -0.7
290,922 + +0.5
290,922 + -1.3
290,922 + -0.3
290,922 + -1.2
290,922 + -1.0
290,922 + +1.1
290,922 + -2.1
290,922 + -0.2
290,922 + -0.4
290,922 + -0.8
290,922 + -0.9
290,922 + -0.4
290,922 + -1.3
290,922 + -1.3
290,922 + +0.6
290,922 + +0.2
290,922 + -1.1
290,922 + -0.2
290,922 + -0.9
290,922 + -1.6
290,922 + -0.1
290,922 + -1.2
290,923 - -0.5
290,923 - -0.7
290,923 - +1.1
290,923 - -0.2
290,923 - +1.4
290,923 - -2.0
290,923 - -0.5
290,923 - +1.1
290,923 - -0.9
290,923 - -0.2
290,923 - -0.0
290,923 - -0.9
290,923 - +0.1
290,923 - -1.5
290,923 - +0.7
290,923 - -1.8
290,923 - -0.6
290,923 - -1.3
290,923 - -0.3
290,923 - +0.6
290,923 - +0.3
290,923 - +0.4
290,923 - -2.3
290,923 - -0.4
290,923 - +0.4
291,034 + -1.2
291,034 + -0.2
291,034 + +0.1
291,035 - -0.7
291,035 - -3.0
291,035 - -0.5
291,035 - +0.0
291,272 - MPMX19_06107 0.18 +0.3
291,302 + MPMX19_06107 0.22 -1.9
291,302 + MPMX19_06107 0.22 -0.1
291,302 + MPMX19_06107 0.22 -1.0
291,302 + MPMX19_06107 0.22 -0.6
291,302 + MPMX19_06107 0.22 -0.1
291,303 - MPMX19_06107 0.22 -0.5
291,457 + MPMX19_06107 0.43 -0.3
291,457 + MPMX19_06107 0.43 -1.0
291,457 + MPMX19_06107 0.43 -1.5
291,458 - MPMX19_06107 0.43 -0.4
291,487 + MPMX19_06107 0.47 -0.8
291,487 + MPMX19_06107 0.47 -1.3
291,487 + MPMX19_06107 0.47 -0.6
291,487 + MPMX19_06107 0.47 -1.0
291,488 - MPMX19_06107 0.47 +0.1
291,488 - MPMX19_06107 0.47 +0.7
291,488 - MPMX19_06107 0.47 -1.7
291,748 + MPMX19_06107 0.81 -1.4
291,748 + MPMX19_06107 0.81 +0.1
291,749 - MPMX19_06107 0.81 -0.5
291,749 - MPMX19_06107 0.81 -0.5
291,749 - MPMX19_06107 0.81 +0.4
291,886 + -0.1
291,886 + -0.5
291,886 + +0.0
291,886 + -1.2
291,887 - +0.4
291,887 - -0.5
291,887 - -0.7

Or see this region's nucleotide sequence