Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03561

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03560 and MPMX19_03561 are separated by 116 nucleotidesMPMX19_03561 and MPMX19_03562 are separated by 34 nucleotides MPMX19_03560: MPMX19_03560 - 60 kDa chaperonin, at 980,780 to 982,420 _03560 MPMX19_03561: MPMX19_03561 - Propane 2-monooxygenase, effector component, at 982,537 to 982,893 _03561 MPMX19_03562: MPMX19_03562 - Propane 2-monooxygenase, hydroxylase component small subunit, at 982,928 to 984,061 _03562 Position (kb) 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.892 kb on - strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.220 kb on - strand, within MPMX19_03560at 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.613 kb on + strand, within MPMX19_03561at 982.613 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.520 kb on + strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.521 kb on - strand, within MPMX19_03562at 983.554 kb on - strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.595 kb on + strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.596 kb on - strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.637 kb on + strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.638 kb on - strand, within MPMX19_03562at 983.776 kb on - strand, within MPMX19_03562at 983.856 kb on + strand, within MPMX19_03562at 983.856 kb on + strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562at 983.857 kb on - strand, within MPMX19_03562

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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981,768 + MPMX19_03560 0.60 -3.1
981,768 + MPMX19_03560 0.60 -0.4
981,768 + MPMX19_03560 0.60 -1.0
981,768 + MPMX19_03560 0.60 +0.7
981,768 + MPMX19_03560 0.60 +0.1
981,768 + MPMX19_03560 0.60 +1.3
981,768 + MPMX19_03560 0.60 -0.9
981,768 + MPMX19_03560 0.60 +0.2
981,768 + MPMX19_03560 0.60 -0.6
981,768 + MPMX19_03560 0.60 -1.6
981,768 + MPMX19_03560 0.60 -0.8
981,768 + MPMX19_03560 0.60 +0.4
981,768 + MPMX19_03560 0.60 -0.8
981,768 + MPMX19_03560 0.60 -0.6
981,768 + MPMX19_03560 0.60 -0.0
981,769 - MPMX19_03560 0.60 -1.1
981,769 - MPMX19_03560 0.60 -1.1
981,769 - MPMX19_03560 0.60 +0.1
981,769 - MPMX19_03560 0.60 +0.1
981,769 - MPMX19_03560 0.60 -0.5
981,769 - MPMX19_03560 0.60 -0.9
981,769 - MPMX19_03560 0.60 -1.2
981,769 - MPMX19_03560 0.60 +0.7
981,769 - MPMX19_03560 0.60 -0.5
981,769 - MPMX19_03560 0.60 -1.3
981,769 - MPMX19_03560 0.60 +0.7
981,769 - MPMX19_03560 0.60 -1.1
981,769 - MPMX19_03560 0.60 -1.1
981,892 - MPMX19_03560 0.68 -1.2
982,219 + MPMX19_03560 0.88 -1.9
982,219 + MPMX19_03560 0.88 -3.0
982,219 + MPMX19_03560 0.88 -0.1
982,220 - MPMX19_03560 0.88 -0.9
982,544 + -0.5
982,544 + -0.1
982,544 + -0.4
982,544 + +0.1
982,545 - -0.1
982,545 - -0.5
982,545 - -2.2
982,613 + MPMX19_03561 0.21 -2.3
982,613 + MPMX19_03561 0.21 +1.7
982,736 + MPMX19_03561 0.56 -0.6
982,736 + MPMX19_03561 0.56 -0.4
982,736 + MPMX19_03561 0.56 -0.4
982,736 + MPMX19_03561 0.56 -0.9
982,736 + MPMX19_03561 0.56 -0.9
982,736 + MPMX19_03561 0.56 -0.4
982,736 + MPMX19_03561 0.56 +1.0
982,736 + MPMX19_03561 0.56 -0.4
982,737 - MPMX19_03561 0.56 -1.6
982,737 - MPMX19_03561 0.56 -1.6
982,737 - MPMX19_03561 0.56 -1.0
982,737 - MPMX19_03561 0.56 -0.1
982,737 - MPMX19_03561 0.56 -0.3
982,737 - MPMX19_03561 0.56 -1.7
983,253 + MPMX19_03562 0.29 -0.2
983,253 + MPMX19_03562 0.29 -0.1
983,253 + MPMX19_03562 0.29 -1.2
983,382 + MPMX19_03562 0.40 -0.9
983,382 + MPMX19_03562 0.40 -0.1
983,383 - MPMX19_03562 0.40 +1.0
983,383 - MPMX19_03562 0.40 +0.3
983,413 + MPMX19_03562 0.43 -0.6
983,413 + MPMX19_03562 0.43 -0.2
983,414 - MPMX19_03562 0.43 -0.9
983,414 - MPMX19_03562 0.43 -0.7
983,520 + MPMX19_03562 0.52 +0.1
983,520 + MPMX19_03562 0.52 +0.5
983,520 + MPMX19_03562 0.52 -0.6
983,520 + MPMX19_03562 0.52 -0.1
983,521 - MPMX19_03562 0.52 -1.4
983,521 - MPMX19_03562 0.52 +0.4
983,521 - MPMX19_03562 0.52 -1.0
983,521 - MPMX19_03562 0.52 -0.6
983,554 - MPMX19_03562 0.55 -1.2
983,595 + MPMX19_03562 0.59 +0.5
983,595 + MPMX19_03562 0.59 -1.6
983,595 + MPMX19_03562 0.59 -0.1
983,595 + MPMX19_03562 0.59 +0.5
983,595 + MPMX19_03562 0.59 -1.1
983,596 - MPMX19_03562 0.59 -1.7
983,596 - MPMX19_03562 0.59 +0.4
983,596 - MPMX19_03562 0.59 +1.4
983,596 - MPMX19_03562 0.59 -1.6
983,596 - MPMX19_03562 0.59 +0.1
983,637 + MPMX19_03562 0.63 -1.3
983,637 + MPMX19_03562 0.63 -0.4
983,637 + MPMX19_03562 0.63 -0.9
983,638 - MPMX19_03562 0.63 -0.4
983,638 - MPMX19_03562 0.63 -0.4
983,638 - MPMX19_03562 0.63 +0.5
983,776 - MPMX19_03562 0.75 -0.3
983,856 + MPMX19_03562 0.82 -0.9
983,856 + MPMX19_03562 0.82 -0.1
983,857 - MPMX19_03562 0.82 -0.9
983,857 - MPMX19_03562 0.82 -0.3
983,857 - MPMX19_03562 0.82 -0.7
983,857 - MPMX19_03562 0.82 +1.0
983,857 - MPMX19_03562 0.82 -0.2

Or see this region's nucleotide sequence