Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03310

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03309 and MPMX19_03310 are separated by 121 nucleotidesMPMX19_03310 and MPMX19_03311 are separated by 47 nucleotides MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074 _03309 MPMX19_03310: MPMX19_03310 - Ribose import binding protein RbsB, at 657,196 to 658,140 _03310 MPMX19_03311: MPMX19_03311 - Ribose import permease protein RbsC, at 658,188 to 659,279 _03311 Position (kb) 657 658 659Strain fitness (log2 ratio) -2 -1 0 1 2 3at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.314 kb on + strand, within MPMX19_03309at 656.315 kb on - strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.437 kb on + strand, within MPMX19_03309at 656.438 kb on - strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.456 kb on + strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.457 kb on - strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.644 kb on + strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.645 kb on - strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.719 kb on + strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.720 kb on - strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.725 kb on + strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.726 kb on - strand, within MPMX19_03309at 656.899 kb on + strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.900 kb on - strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.902 kb on + strand, within MPMX19_03309at 656.903 kb on - strand, within MPMX19_03309at 656.920 kb on + strand, within MPMX19_03309at 657.200 kb on + strandat 657.200 kb on + strandat 657.201 kb on - strandat 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.765 kb on - strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.974 kb on + strand, within MPMX19_03310at 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.402 kb on + strand, within MPMX19_03311at 658.402 kb on + strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.884 kb on - strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.024 kb on - strand, within MPMX19_03311

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
656,314 + MPMX19_03309 0.26 -1.2
656,314 + MPMX19_03309 0.26 -0.3
656,314 + MPMX19_03309 0.26 -0.5
656,315 - MPMX19_03309 0.26 +0.7
656,437 + MPMX19_03309 0.38 +0.9
656,437 + MPMX19_03309 0.38 -0.9
656,437 + MPMX19_03309 0.38 -0.6
656,438 - MPMX19_03309 0.38 -1.4
656,456 + MPMX19_03309 0.40 -0.5
656,456 + MPMX19_03309 0.40 -0.6
656,456 + MPMX19_03309 0.40 -0.9
656,456 + MPMX19_03309 0.40 +0.4
656,456 + MPMX19_03309 0.40 -0.6
656,456 + MPMX19_03309 0.40 +1.7
656,456 + MPMX19_03309 0.40 +0.1
656,456 + MPMX19_03309 0.40 +0.6
656,456 + MPMX19_03309 0.40 -0.1
656,456 + MPMX19_03309 0.40 +0.1
656,457 - MPMX19_03309 0.40 +0.4
656,457 - MPMX19_03309 0.40 -0.4
656,457 - MPMX19_03309 0.40 -0.4
656,457 - MPMX19_03309 0.40 +0.1
656,457 - MPMX19_03309 0.40 +0.4
656,457 - MPMX19_03309 0.40 -0.2
656,644 + MPMX19_03309 0.58 -2.2
656,644 + MPMX19_03309 0.58 -0.4
656,644 + MPMX19_03309 0.58 -0.9
656,644 + MPMX19_03309 0.58 -1.6
656,644 + MPMX19_03309 0.58 -0.1
656,644 + MPMX19_03309 0.58 -2.1
656,645 - MPMX19_03309 0.58 +1.0
656,645 - MPMX19_03309 0.58 +0.3
656,645 - MPMX19_03309 0.58 -0.6
656,645 - MPMX19_03309 0.58 -0.1
656,645 - MPMX19_03309 0.58 -1.6
656,645 - MPMX19_03309 0.58 +1.1
656,719 + MPMX19_03309 0.65 -0.3
656,719 + MPMX19_03309 0.65 -1.4
656,719 + MPMX19_03309 0.65 +0.7
656,719 + MPMX19_03309 0.65 +0.1
656,720 - MPMX19_03309 0.65 -0.7
656,720 - MPMX19_03309 0.65 -1.6
656,720 - MPMX19_03309 0.65 -1.7
656,725 + MPMX19_03309 0.66 +0.7
656,725 + MPMX19_03309 0.66 +0.1
656,725 + MPMX19_03309 0.66 -1.0
656,725 + MPMX19_03309 0.66 -2.1
656,725 + MPMX19_03309 0.66 -0.6
656,725 + MPMX19_03309 0.66 -1.6
656,725 + MPMX19_03309 0.66 -0.3
656,725 + MPMX19_03309 0.66 -2.1
656,725 + MPMX19_03309 0.66 +0.2
656,726 - MPMX19_03309 0.66 -1.4
656,726 - MPMX19_03309 0.66 -0.3
656,899 + MPMX19_03309 0.83 -0.1
656,900 - MPMX19_03309 0.83 +0.7
656,900 - MPMX19_03309 0.83 +0.7
656,902 + MPMX19_03309 0.83 +0.1
656,902 + MPMX19_03309 0.83 -0.7
656,903 - MPMX19_03309 0.83 -0.3
656,920 + MPMX19_03309 0.85 +0.1
657,200 + -0.1
657,200 + -2.4
657,201 - -1.5
657,323 + MPMX19_03310 0.13 -0.4
657,323 + MPMX19_03310 0.13 -0.4
657,323 + MPMX19_03310 0.13 +1.0
657,324 - MPMX19_03310 0.14 -0.4
657,324 - MPMX19_03310 0.14 -1.0
657,569 + MPMX19_03310 0.39 -0.3
657,569 + MPMX19_03310 0.39 -2.1
657,569 + MPMX19_03310 0.39 +0.6
657,569 + MPMX19_03310 0.39 -0.7
657,569 + MPMX19_03310 0.39 +1.4
657,569 + MPMX19_03310 0.39 -0.5
657,569 + MPMX19_03310 0.39 +1.1
657,569 + MPMX19_03310 0.39 -0.3
657,569 + MPMX19_03310 0.39 -1.0
657,570 - MPMX19_03310 0.40 +0.1
657,570 - MPMX19_03310 0.40 -1.0
657,570 - MPMX19_03310 0.40 -1.3
657,570 - MPMX19_03310 0.40 -0.0
657,570 - MPMX19_03310 0.40 -0.3
657,570 - MPMX19_03310 0.40 -0.5
657,611 + MPMX19_03310 0.44 +0.9
657,611 + MPMX19_03310 0.44 -1.4
657,611 + MPMX19_03310 0.44 -0.3
657,611 + MPMX19_03310 0.44 +0.3
657,611 + MPMX19_03310 0.44 -0.4
657,611 + MPMX19_03310 0.44 -1.3
657,612 - MPMX19_03310 0.44 -1.2
657,612 - MPMX19_03310 0.44 -1.0
657,612 - MPMX19_03310 0.44 +0.7
657,662 + MPMX19_03310 0.49 +0.9
657,662 + MPMX19_03310 0.49 -0.1
657,662 + MPMX19_03310 0.49 +1.5
657,662 + MPMX19_03310 0.49 -1.3
657,662 + MPMX19_03310 0.49 -0.0
657,662 + MPMX19_03310 0.49 -2.2
657,662 + MPMX19_03310 0.49 -2.5
657,662 + MPMX19_03310 0.49 +0.3
657,662 + MPMX19_03310 0.49 -1.3
657,662 + MPMX19_03310 0.49 -2.6
657,662 + MPMX19_03310 0.49 -0.3
657,662 + MPMX19_03310 0.49 +0.5
657,662 + MPMX19_03310 0.49 -0.0
657,663 - MPMX19_03310 0.49 -0.1
657,663 - MPMX19_03310 0.49 +0.1
657,663 - MPMX19_03310 0.49 +0.1
657,663 - MPMX19_03310 0.49 +1.3
657,663 - MPMX19_03310 0.49 -0.3
657,663 - MPMX19_03310 0.49 +0.4
657,663 - MPMX19_03310 0.49 -0.8
657,663 - MPMX19_03310 0.49 +0.1
657,663 - MPMX19_03310 0.49 -0.9
657,663 - MPMX19_03310 0.49 +0.9
657,663 - MPMX19_03310 0.49 +1.1
657,663 - MPMX19_03310 0.49 +1.7
657,663 - MPMX19_03310 0.49 +0.5
657,764 + MPMX19_03310 0.60 -2.1
657,764 + MPMX19_03310 0.60 -1.6
657,764 + MPMX19_03310 0.60 -0.4
657,765 - MPMX19_03310 0.60 -0.1
657,767 + MPMX19_03310 0.60 -0.1
657,767 + MPMX19_03310 0.60 +0.7
657,767 + MPMX19_03310 0.60 -1.7
657,767 + MPMX19_03310 0.60 -1.1
657,768 - MPMX19_03310 0.61 -0.3
657,768 - MPMX19_03310 0.61 -2.0
657,974 + MPMX19_03310 0.82 -1.2
658,160 + +0.7
658,160 + -0.9
658,160 + -1.7
658,160 + -0.7
658,160 + +0.7
658,160 + +0.9
658,160 + +1.3
658,161 - +1.2
658,161 - -0.5
658,161 - -0.1
658,161 - -0.5
658,402 + MPMX19_03311 0.20 -0.3
658,402 + MPMX19_03311 0.20 -1.1
658,403 - MPMX19_03311 0.20 -2.3
658,403 - MPMX19_03311 0.20 -1.0
658,489 + MPMX19_03311 0.28 -0.9
658,489 + MPMX19_03311 0.28 +0.4
658,489 + MPMX19_03311 0.28 -0.1
658,489 + MPMX19_03311 0.28 +0.0
658,489 + MPMX19_03311 0.28 +0.1
658,489 + MPMX19_03311 0.28 -0.3
658,489 + MPMX19_03311 0.28 +0.7
658,489 + MPMX19_03311 0.28 -0.2
658,489 + MPMX19_03311 0.28 -1.6
658,489 + MPMX19_03311 0.28 -0.8
658,489 + MPMX19_03311 0.28 +3.1
658,489 + MPMX19_03311 0.28 -1.6
658,489 + MPMX19_03311 0.28 +0.6
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 +1.7
658,489 + MPMX19_03311 0.28 +0.1
658,489 + MPMX19_03311 0.28 -0.2
658,490 - MPMX19_03311 0.28 -1.0
658,490 - MPMX19_03311 0.28 +0.6
658,490 - MPMX19_03311 0.28 -0.3
658,490 - MPMX19_03311 0.28 -1.1
658,490 - MPMX19_03311 0.28 -0.1
658,490 - MPMX19_03311 0.28 +0.1
658,490 - MPMX19_03311 0.28 +0.1
658,490 - MPMX19_03311 0.28 -0.6
658,490 - MPMX19_03311 0.28 -0.9
658,490 - MPMX19_03311 0.28 -0.4
658,561 + MPMX19_03311 0.34 -0.4
658,561 + MPMX19_03311 0.34 -0.8
658,561 + MPMX19_03311 0.34 +0.5
658,561 + MPMX19_03311 0.34 -0.5
658,561 + MPMX19_03311 0.34 +0.7
658,561 + MPMX19_03311 0.34 -0.7
658,561 + MPMX19_03311 0.34 +0.1
658,561 + MPMX19_03311 0.34 +0.1
658,561 + MPMX19_03311 0.34 -1.0
658,561 + MPMX19_03311 0.34 +0.7
658,561 + MPMX19_03311 0.34 +0.1
658,561 + MPMX19_03311 0.34 -0.6
658,561 + MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 -2.4
658,562 - MPMX19_03311 0.34 -0.1
658,562 - MPMX19_03311 0.34 -0.2
658,562 - MPMX19_03311 0.34 -1.2
658,562 - MPMX19_03311 0.34 +1.1
658,562 - MPMX19_03311 0.34 +0.0
658,562 - MPMX19_03311 0.34 +0.9
658,562 - MPMX19_03311 0.34 -0.1
658,562 - MPMX19_03311 0.34 +0.9
658,562 - MPMX19_03311 0.34 -1.4
658,562 - MPMX19_03311 0.34 +0.9
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 +0.3
658,562 - MPMX19_03311 0.34 -0.4
658,562 - MPMX19_03311 0.34 -1.1
658,562 - MPMX19_03311 0.34 +0.2
658,562 - MPMX19_03311 0.34 -0.9
658,562 - MPMX19_03311 0.34 -1.8
658,562 - MPMX19_03311 0.34 -2.0
658,562 - MPMX19_03311 0.34 -1.0
658,884 - MPMX19_03311 0.64 +0.5
659,023 + MPMX19_03311 0.76 -1.1
659,023 + MPMX19_03311 0.76 -1.7
659,023 + MPMX19_03311 0.76 -1.6
659,024 - MPMX19_03311 0.77 +0.2

Or see this region's nucleotide sequence