Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02909

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02908 and MPMX19_02909 overlap by 8 nucleotidesMPMX19_02909 and MPMX19_02910 overlap by 4 nucleotidesMPMX19_02910 and MPMX19_02911 are separated by 44 nucleotides MPMX19_02908: MPMX19_02908 - Cytochrome c oxidase subunit 1-beta, at 164,223 to 165,866 _02908 MPMX19_02909: MPMX19_02909 - Cytochrome c oxidase subunit 3, at 165,859 to 166,527 _02909 MPMX19_02910: MPMX19_02910 - hypothetical protein, at 166,524 to 166,868 _02910 MPMX19_02911: MPMX19_02911 - hypothetical protein, at 166,913 to 167,386 _02911 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.905 kb on + strand, within MPMX19_02908at 164.997 kb on + strand, within MPMX19_02908at 164.997 kb on + strand, within MPMX19_02908at 164.997 kb on + strand, within MPMX19_02908at 164.997 kb on + strand, within MPMX19_02908at 164.997 kb on + strand, within MPMX19_02908at 164.998 kb on - strand, within MPMX19_02908at 164.998 kb on - strand, within MPMX19_02908at 164.998 kb on - strand, within MPMX19_02908at 164.998 kb on - strand, within MPMX19_02908at 165.015 kb on + strand, within MPMX19_02908at 165.015 kb on + strand, within MPMX19_02908at 165.015 kb on + strand, within MPMX19_02908at 165.015 kb on + strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.016 kb on - strand, within MPMX19_02908at 165.090 kb on + strand, within MPMX19_02908at 165.180 kb on + strand, within MPMX19_02908at 165.181 kb on - strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.210 kb on + strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.211 kb on - strand, within MPMX19_02908at 165.300 kb on + strand, within MPMX19_02908at 165.300 kb on + strand, within MPMX19_02908at 165.300 kb on + strand, within MPMX19_02908at 165.300 kb on + strand, within MPMX19_02908at 165.300 kb on + strand, within MPMX19_02908at 165.301 kb on - strand, within MPMX19_02908at 165.301 kb on - strand, within MPMX19_02908at 165.301 kb on - strand, within MPMX19_02908at 165.301 kb on - strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.393 kb on + strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.394 kb on - strand, within MPMX19_02908at 165.417 kb on + strand, within MPMX19_02908at 165.417 kb on + strand, within MPMX19_02908at 165.417 kb on + strand, within MPMX19_02908at 165.417 kb on + strand, within MPMX19_02908at 165.417 kb on + strand, within MPMX19_02908at 165.418 kb on - strand, within MPMX19_02908at 165.418 kb on - strand, within MPMX19_02908at 165.418 kb on - strand, within MPMX19_02908at 165.465 kb on + strand, within MPMX19_02908at 165.465 kb on + strand, within MPMX19_02908at 165.496 kb on - strand, within MPMX19_02908at 165.579 kb on + strand, within MPMX19_02908at 165.580 kb on - strand, within MPMX19_02908at 165.580 kb on - strand, within MPMX19_02908at 165.600 kb on + strand, within MPMX19_02908at 165.600 kb on + strand, within MPMX19_02908at 165.600 kb on + strand, within MPMX19_02908at 165.601 kb on - strand, within MPMX19_02908at 165.601 kb on - strand, within MPMX19_02908at 165.601 kb on - strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.603 kb on + strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.604 kb on - strand, within MPMX19_02908at 165.610 kb on - strand, within MPMX19_02908at 165.675 kb on + strand, within MPMX19_02908at 165.676 kb on - strand, within MPMX19_02908at 165.676 kb on - strand, within MPMX19_02908at 165.693 kb on + strand, within MPMX19_02908at 165.693 kb on + strand, within MPMX19_02908at 165.693 kb on + strand, within MPMX19_02908at 165.694 kb on - strand, within MPMX19_02908at 165.694 kb on - strand, within MPMX19_02908at 165.828 kb on + strandat 165.828 kb on + strandat 165.829 kb on - strandat 165.829 kb on - strandat 165.829 kb on - strandat 165.829 kb on - strandat 165.829 kb on - strandat 165.910 kb on + strandat 166.006 kb on + strand, within MPMX19_02909at 166.006 kb on + strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.007 kb on - strand, within MPMX19_02909at 166.059 kb on + strand, within MPMX19_02909at 166.222 kb on + strand, within MPMX19_02909at 166.223 kb on - strand, within MPMX19_02909at 166.223 kb on - strand, within MPMX19_02909at 166.228 kb on + strand, within MPMX19_02909at 166.229 kb on - strand, within MPMX19_02909at 166.312 kb on + strand, within MPMX19_02909at 166.312 kb on + strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.313 kb on - strand, within MPMX19_02909at 166.321 kb on + strand, within MPMX19_02909at 166.322 kb on - strand, within MPMX19_02909at 166.322 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.427 kb on - strand, within MPMX19_02909at 166.454 kb on - strand, within MPMX19_02909at 166.454 kb on - strand, within MPMX19_02909at 166.501 kb on + strandat 166.502 kb on - strandat 166.502 kb on - strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.557 kb on + strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.558 kb on - strandat 166.603 kb on + strand, within MPMX19_02910at 166.603 kb on + strand, within MPMX19_02910at 166.604 kb on - strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.614 kb on + strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.615 kb on - strand, within MPMX19_02910at 166.791 kb on + strand, within MPMX19_02910at 166.792 kb on - strand, within MPMX19_02910at 166.792 kb on - strand, within MPMX19_02910at 166.848 kb on + strandat 166.848 kb on + strandat 167.151 kb on + strand, within MPMX19_02911at 167.151 kb on + strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.448 kb on + strandat 167.448 kb on + strandat 167.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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164,905 + MPMX19_02908 0.41 -0.8
164,997 + MPMX19_02908 0.47 -0.6
164,997 + MPMX19_02908 0.47 +0.3
164,997 + MPMX19_02908 0.47 -0.6
164,997 + MPMX19_02908 0.47 -1.1
164,997 + MPMX19_02908 0.47 -0.2
164,998 - MPMX19_02908 0.47 -0.8
164,998 - MPMX19_02908 0.47 -1.3
164,998 - MPMX19_02908 0.47 -0.1
164,998 - MPMX19_02908 0.47 -0.3
165,015 + MPMX19_02908 0.48 +0.7
165,015 + MPMX19_02908 0.48 +0.7
165,015 + MPMX19_02908 0.48 +0.4
165,015 + MPMX19_02908 0.48 -1.0
165,016 - MPMX19_02908 0.48 -1.4
165,016 - MPMX19_02908 0.48 -1.1
165,016 - MPMX19_02908 0.48 -2.4
165,016 - MPMX19_02908 0.48 -0.6
165,016 - MPMX19_02908 0.48 +0.7
165,016 - MPMX19_02908 0.48 +2.5
165,090 + MPMX19_02908 0.53 -1.1
165,180 + MPMX19_02908 0.58 +1.0
165,181 - MPMX19_02908 0.58 +1.0
165,210 + MPMX19_02908 0.60 +0.1
165,210 + MPMX19_02908 0.60 -0.5
165,210 + MPMX19_02908 0.60 +0.9
165,210 + MPMX19_02908 0.60 +0.2
165,210 + MPMX19_02908 0.60 -1.0
165,210 + MPMX19_02908 0.60 -1.1
165,211 - MPMX19_02908 0.60 -0.5
165,211 - MPMX19_02908 0.60 -0.8
165,211 - MPMX19_02908 0.60 -0.1
165,211 - MPMX19_02908 0.60 -1.7
165,211 - MPMX19_02908 0.60 +0.4
165,211 - MPMX19_02908 0.60 +1.2
165,211 - MPMX19_02908 0.60 -1.1
165,211 - MPMX19_02908 0.60 -0.6
165,211 - MPMX19_02908 0.60 +0.9
165,300 + MPMX19_02908 0.66 +1.0
165,300 + MPMX19_02908 0.66 -1.1
165,300 + MPMX19_02908 0.66 +0.3
165,300 + MPMX19_02908 0.66 +0.2
165,300 + MPMX19_02908 0.66 +0.9
165,301 - MPMX19_02908 0.66 -0.8
165,301 - MPMX19_02908 0.66 +0.0
165,301 - MPMX19_02908 0.66 -0.8
165,301 - MPMX19_02908 0.66 -1.6
165,393 + MPMX19_02908 0.71 -0.6
165,393 + MPMX19_02908 0.71 +0.2
165,393 + MPMX19_02908 0.71 -0.1
165,393 + MPMX19_02908 0.71 +0.4
165,393 + MPMX19_02908 0.71 -2.1
165,393 + MPMX19_02908 0.71 +0.5
165,393 + MPMX19_02908 0.71 -1.6
165,394 - MPMX19_02908 0.71 -1.3
165,394 - MPMX19_02908 0.71 -0.3
165,394 - MPMX19_02908 0.71 +1.7
165,394 - MPMX19_02908 0.71 -1.6
165,394 - MPMX19_02908 0.71 -0.1
165,394 - MPMX19_02908 0.71 +0.4
165,394 - MPMX19_02908 0.71 -0.7
165,394 - MPMX19_02908 0.71 -1.3
165,394 - MPMX19_02908 0.71 +0.4
165,417 + MPMX19_02908 0.73 +0.0
165,417 + MPMX19_02908 0.73 -2.2
165,417 + MPMX19_02908 0.73 -1.2
165,417 + MPMX19_02908 0.73 +0.3
165,417 + MPMX19_02908 0.73 +0.2
165,418 - MPMX19_02908 0.73 -1.8
165,418 - MPMX19_02908 0.73 -0.1
165,418 - MPMX19_02908 0.73 -0.1
165,465 + MPMX19_02908 0.76 -1.1
165,465 + MPMX19_02908 0.76 -2.0
165,496 - MPMX19_02908 0.77 -0.8
165,579 + MPMX19_02908 0.82 -1.9
165,580 - MPMX19_02908 0.83 +0.0
165,580 - MPMX19_02908 0.83 +0.0
165,600 + MPMX19_02908 0.84 -0.4
165,600 + MPMX19_02908 0.84 -1.0
165,600 + MPMX19_02908 0.84 -0.1
165,601 - MPMX19_02908 0.84 +0.5
165,601 - MPMX19_02908 0.84 -1.0
165,601 - MPMX19_02908 0.84 -2.0
165,603 + MPMX19_02908 0.84 +0.9
165,603 + MPMX19_02908 0.84 +0.7
165,603 + MPMX19_02908 0.84 +0.4
165,603 + MPMX19_02908 0.84 -1.6
165,603 + MPMX19_02908 0.84 +0.6
165,603 + MPMX19_02908 0.84 +0.3
165,603 + MPMX19_02908 0.84 -1.8
165,603 + MPMX19_02908 0.84 -1.2
165,603 + MPMX19_02908 0.84 +0.7
165,603 + MPMX19_02908 0.84 -0.4
165,604 - MPMX19_02908 0.84 -0.6
165,604 - MPMX19_02908 0.84 -2.3
165,604 - MPMX19_02908 0.84 -0.1
165,604 - MPMX19_02908 0.84 +0.2
165,604 - MPMX19_02908 0.84 -2.4
165,604 - MPMX19_02908 0.84 -0.8
165,604 - MPMX19_02908 0.84 -1.4
165,610 - MPMX19_02908 0.84 +0.6
165,675 + MPMX19_02908 0.88 +0.4
165,676 - MPMX19_02908 0.88 -1.6
165,676 - MPMX19_02908 0.88 -1.1
165,693 + MPMX19_02908 0.89 -2.6
165,693 + MPMX19_02908 0.89 -0.3
165,693 + MPMX19_02908 0.89 -1.6
165,694 - MPMX19_02908 0.89 +2.7
165,694 - MPMX19_02908 0.89 +0.3
165,828 + -0.6
165,828 + -0.4
165,829 - -2.3
165,829 - +1.2
165,829 - +0.1
165,829 - -1.2
165,829 - +0.1
165,910 + +0.7
166,006 + MPMX19_02909 0.22 +1.5
166,006 + MPMX19_02909 0.22 -0.3
166,007 - MPMX19_02909 0.22 +0.2
166,007 - MPMX19_02909 0.22 +0.1
166,007 - MPMX19_02909 0.22 -0.6
166,007 - MPMX19_02909 0.22 +2.3
166,059 + MPMX19_02909 0.30 -2.3
166,222 + MPMX19_02909 0.54 +0.2
166,223 - MPMX19_02909 0.54 -1.4
166,223 - MPMX19_02909 0.54 +0.6
166,228 + MPMX19_02909 0.55 +0.7
166,229 - MPMX19_02909 0.55 -0.3
166,312 + MPMX19_02909 0.68 -0.6
166,312 + MPMX19_02909 0.68 +1.2
166,313 - MPMX19_02909 0.68 +1.3
166,313 - MPMX19_02909 0.68 +0.4
166,313 - MPMX19_02909 0.68 -2.3
166,321 + MPMX19_02909 0.69 +0.3
166,322 - MPMX19_02909 0.69 -1.4
166,322 - MPMX19_02909 0.69 -0.3
166,427 - MPMX19_02909 0.85 -0.8
166,427 - MPMX19_02909 0.85 -1.0
166,427 - MPMX19_02909 0.85 +1.2
166,454 - MPMX19_02909 0.89 +0.3
166,454 - MPMX19_02909 0.89 -1.0
166,501 + -0.9
166,502 - -0.8
166,502 - -0.3
166,557 + +1.2
166,557 + -1.2
166,557 + -0.7
166,557 + -0.8
166,557 + +0.2
166,557 + +0.2
166,557 + -0.0
166,557 + -0.1
166,558 - -1.1
166,558 - +0.2
166,558 - -0.3
166,558 - -1.3
166,558 - +0.2
166,558 - -0.3
166,558 - +1.1
166,603 + MPMX19_02910 0.23 +0.2
166,603 + MPMX19_02910 0.23 -0.4
166,604 - MPMX19_02910 0.23 -0.3
166,614 + MPMX19_02910 0.26 -0.3
166,614 + MPMX19_02910 0.26 -0.1
166,614 + MPMX19_02910 0.26 +0.1
166,614 + MPMX19_02910 0.26 -0.8
166,614 + MPMX19_02910 0.26 -0.5
166,614 + MPMX19_02910 0.26 -1.0
166,614 + MPMX19_02910 0.26 -1.4
166,614 + MPMX19_02910 0.26 -1.7
166,614 + MPMX19_02910 0.26 -1.0
166,614 + MPMX19_02910 0.26 -1.4
166,614 + MPMX19_02910 0.26 -0.1
166,615 - MPMX19_02910 0.26 -0.1
166,615 - MPMX19_02910 0.26 -1.7
166,615 - MPMX19_02910 0.26 -1.6
166,615 - MPMX19_02910 0.26 -1.1
166,615 - MPMX19_02910 0.26 +0.7
166,615 - MPMX19_02910 0.26 +0.9
166,615 - MPMX19_02910 0.26 -0.8
166,615 - MPMX19_02910 0.26 -0.6
166,791 + MPMX19_02910 0.77 -0.1
166,792 - MPMX19_02910 0.78 -0.6
166,792 - MPMX19_02910 0.78 -0.8
166,848 + +0.5
166,848 + -1.2
167,151 + MPMX19_02911 0.50 -0.7
167,151 + MPMX19_02911 0.50 +0.7
167,152 - MPMX19_02911 0.50 -1.0
167,152 - MPMX19_02911 0.50 -1.8
167,222 + MPMX19_02911 0.65 -0.1
167,222 + MPMX19_02911 0.65 -1.3
167,222 + MPMX19_02911 0.65 +0.5
167,222 + MPMX19_02911 0.65 -0.1
167,223 - MPMX19_02911 0.65 -0.5
167,223 - MPMX19_02911 0.65 -1.2
167,223 - MPMX19_02911 0.65 -1.8
167,223 - MPMX19_02911 0.65 -1.0
167,384 + +0.1
167,384 + +0.6
167,384 + +1.1
167,384 + +0.0
167,384 + +1.2
167,384 + -0.3
167,384 + -0.1
167,384 + -0.8
167,384 + -0.6
167,384 + +0.4
167,384 + -1.0
167,385 - -0.6
167,385 - -0.6
167,385 - -0.6
167,385 - +0.2
167,385 - +0.7
167,385 - -0.1
167,385 - +0.9
167,385 - -1.6
167,385 - -2.1
167,427 + +0.4
167,427 + +1.0
167,427 + -1.2
167,427 + +0.5
167,428 - -0.1
167,428 - +1.2
167,428 - +0.7
167,448 + -1.7
167,448 + +0.3
167,494 - -0.4

Or see this region's nucleotide sequence