Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02125 and MPMX19_02126 are separated by 26 nucleotides MPMX19_02126 and MPMX19_02127 are separated by 135 nucleotides MPMX19_02127 and MPMX19_02128 overlap by 4 nucleotides
MPMX19_02125: MPMX19_02125 - Porphobilinogen deaminase, at 2,223,237 to 2,224,175
_02125
MPMX19_02126: MPMX19_02126 - hypothetical protein, at 2,224,202 to 2,224,972
_02126
MPMX19_02127: MPMX19_02127 - hypothetical protein, at 2,225,108 to 2,226,874
_02127
MPMX19_02128: MPMX19_02128 - Lipopolysaccharide assembly protein B, at 2,226,871 to 2,228,220
_02128
Position (kb)
2225
2226
2227 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2224.992 kb on + strand at 2224.999 kb on + strand at 2224.999 kb on + strand at 2224.999 kb on + strand at 2225.000 kb on - strand at 2225.074 kb on + strand at 2225.075 kb on - strand at 2225.075 kb on - strand at 2225.100 kb on + strand at 2225.100 kb on + strand at 2225.101 kb on - strand at 2225.230 kb on + strand at 2225.230 kb on + strand at 2225.230 kb on + strand at 2225.230 kb on + strand at 2225.230 kb on + strand at 2225.231 kb on - strand at 2225.231 kb on - strand at 2225.231 kb on - strand at 2225.753 kb on + strand, within MPMX19_02127 at 2225.753 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.810 kb on + strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.811 kb on - strand, within MPMX19_02127 at 2225.813 kb on - strand, within MPMX19_02127 at 2226.470 kb on + strand, within MPMX19_02127 at 2226.470 kb on + strand, within MPMX19_02127 at 2226.470 kb on + strand, within MPMX19_02127 at 2226.470 kb on + strand, within MPMX19_02127 at 2226.471 kb on - strand, within MPMX19_02127 at 2226.974 kb on - strand at 2227.288 kb on + strand, within MPMX19_02128 at 2227.289 kb on - strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.447 kb on + strand, within MPMX19_02128 at 2227.448 kb on - strand, within MPMX19_02128 at 2227.448 kb on - strand, within MPMX19_02128 at 2227.448 kb on - strand, within MPMX19_02128 at 2227.771 kb on + strand, within MPMX19_02128 at 2227.772 kb on - strand, within MPMX19_02128 at 2227.772 kb on - strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.792 kb on + strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128 at 2227.793 kb on - strand, within MPMX19_02128
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,224,992 + -1.6 2,224,999 + -0.6 2,224,999 + +1.8 2,224,999 + -2.3 2,225,000 - -0.7 2,225,074 + +1.4 2,225,075 - -0.6 2,225,075 - +0.8 2,225,100 + -2.1 2,225,100 + +0.1 2,225,101 - +0.2 2,225,230 + +0.0 2,225,230 + +1.4 2,225,230 + -0.4 2,225,230 + -0.5 2,225,230 + -0.5 2,225,231 - +0.1 2,225,231 - -0.8 2,225,231 - +0.0 2,225,753 + MPMX19_02127 0.37 -0.0 2,225,753 + MPMX19_02127 0.37 -0.7 2,225,810 + MPMX19_02127 0.40 -0.1 2,225,810 + MPMX19_02127 0.40 +0.4 2,225,810 + MPMX19_02127 0.40 +0.1 2,225,810 + MPMX19_02127 0.40 +0.2 2,225,810 + MPMX19_02127 0.40 -0.9 2,225,810 + MPMX19_02127 0.40 -0.1 2,225,810 + MPMX19_02127 0.40 +0.6 2,225,810 + MPMX19_02127 0.40 -1.8 2,225,810 + MPMX19_02127 0.40 +1.0 2,225,810 + MPMX19_02127 0.40 -0.0 2,225,811 - MPMX19_02127 0.40 +0.2 2,225,811 - MPMX19_02127 0.40 +0.2 2,225,811 - MPMX19_02127 0.40 -1.0 2,225,811 - MPMX19_02127 0.40 -0.1 2,225,811 - MPMX19_02127 0.40 +1.0 2,225,811 - MPMX19_02127 0.40 +0.5 2,225,811 - MPMX19_02127 0.40 -0.6 2,225,811 - MPMX19_02127 0.40 -0.7 2,225,811 - MPMX19_02127 0.40 -0.4 2,225,811 - MPMX19_02127 0.40 +0.6 2,225,811 - MPMX19_02127 0.40 +0.9 2,225,811 - MPMX19_02127 0.40 -2.7 2,225,811 - MPMX19_02127 0.40 +0.4 2,225,811 - MPMX19_02127 0.40 +0.1 2,225,811 - MPMX19_02127 0.40 -1.1 2,225,811 - MPMX19_02127 0.40 +0.7 2,225,811 - MPMX19_02127 0.40 -0.6 2,225,813 - MPMX19_02127 0.40 +0.4 2,226,470 + MPMX19_02127 0.77 +0.6 2,226,470 + MPMX19_02127 0.77 -0.4 2,226,470 + MPMX19_02127 0.77 -0.8 2,226,470 + MPMX19_02127 0.77 -0.1 2,226,471 - MPMX19_02127 0.77 -0.2 2,226,974 - +1.1 2,227,288 + MPMX19_02128 0.31 -0.2 2,227,289 - MPMX19_02128 0.31 -0.1 2,227,447 + MPMX19_02128 0.43 -1.9 2,227,447 + MPMX19_02128 0.43 -1.7 2,227,447 + MPMX19_02128 0.43 -0.2 2,227,447 + MPMX19_02128 0.43 +0.1 2,227,447 + MPMX19_02128 0.43 +0.4 2,227,447 + MPMX19_02128 0.43 -0.4 2,227,447 + MPMX19_02128 0.43 -1.3 2,227,447 + MPMX19_02128 0.43 +0.4 2,227,447 + MPMX19_02128 0.43 +1.0 2,227,447 + MPMX19_02128 0.43 -0.5 2,227,447 + MPMX19_02128 0.43 -0.7 2,227,447 + MPMX19_02128 0.43 -0.5 2,227,447 + MPMX19_02128 0.43 -1.5 2,227,447 + MPMX19_02128 0.43 +0.1 2,227,447 + MPMX19_02128 0.43 -1.6 2,227,448 - MPMX19_02128 0.43 +0.3 2,227,448 - MPMX19_02128 0.43 +0.7 2,227,448 - MPMX19_02128 0.43 +1.1 2,227,771 + MPMX19_02128 0.67 -1.8 2,227,772 - MPMX19_02128 0.67 +0.2 2,227,772 - MPMX19_02128 0.67 +0.4 2,227,792 + MPMX19_02128 0.68 +0.3 2,227,792 + MPMX19_02128 0.68 +0.4 2,227,792 + MPMX19_02128 0.68 +0.3 2,227,792 + MPMX19_02128 0.68 -0.2 2,227,792 + MPMX19_02128 0.68 +0.6 2,227,792 + MPMX19_02128 0.68 -0.7 2,227,792 + MPMX19_02128 0.68 -0.7 2,227,793 - MPMX19_02128 0.68 +0.6 2,227,793 - MPMX19_02128 0.68 -0.5 2,227,793 - MPMX19_02128 0.68 -0.2 2,227,793 - MPMX19_02128 0.68 -1.7 2,227,793 - MPMX19_02128 0.68 +0.2 2,227,793 - MPMX19_02128 0.68 -0.0 2,227,793 - MPMX19_02128 0.68 -0.2 2,227,793 - MPMX19_02128 0.68 +0.3 2,227,793 - MPMX19_02128 0.68 -2.0
Or see this region's nucleotide sequence