Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13485

Experiment: growth in full media supplemented with 2mM sodum metaarsenite

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13475 and SGL_RS13480 are separated by 28 nucleotidesSGL_RS13480 and SGL_RS13485 overlap by 16 nucleotidesSGL_RS13485 and SGL_RS13490 are separated by 51 nucleotides SGL_RS13475: SGL_RS13475 - fimbria/pilus outer membrane usher protein, at 2,490,326 to 2,493,004 _RS13475 SGL_RS13480: SGL_RS13480 - hypothetical protein, at 2,493,033 to 2,493,593 _RS13480 SGL_RS13485: SGL_RS13485 - Uma2 family endonuclease, at 2,493,578 to 2,494,153 _RS13485 SGL_RS13490: SGL_RS13490 - aspartate aminotransferase, at 2,494,205 to 2,495,389 _RS13490 Position (kb) 2493 2494 2495Strain fitness (log2 ratio) -2 -1 0 1at 2492.621 kb on - strand, within SGL_RS13475at 2492.701 kb on + strand, within SGL_RS13475at 2492.814 kb on - strandat 2492.884 kb on + strandat 2493.129 kb on + strand, within SGL_RS13480at 2493.249 kb on + strand, within SGL_RS13480at 2493.385 kb on + strand, within SGL_RS13480at 2493.393 kb on - strand, within SGL_RS13480at 2493.565 kb on + strandat 2493.746 kb on + strand, within SGL_RS13485at 2493.748 kb on - strand, within SGL_RS13485at 2493.788 kb on + strand, within SGL_RS13485at 2493.986 kb on + strand, within SGL_RS13485at 2494.020 kb on + strand, within SGL_RS13485at 2494.027 kb on + strand, within SGL_RS13485at 2494.384 kb on - strand, within SGL_RS13490at 2494.392 kb on - strand, within SGL_RS13490at 2494.398 kb on + strand, within SGL_RS13490at 2494.405 kb on + strand, within SGL_RS13490at 2494.423 kb on - strand, within SGL_RS13490at 2494.757 kb on + strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.050 kb on - strand, within SGL_RS13490at 2495.056 kb on + strand, within SGL_RS13490

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite
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2,492,621 - SGL_RS13475 0.86 -0.1
2,492,701 + SGL_RS13475 0.89 +1.2
2,492,814 - +1.4
2,492,884 + -0.3
2,493,129 + SGL_RS13480 0.17 +0.4
2,493,249 + SGL_RS13480 0.39 +0.1
2,493,385 + SGL_RS13480 0.63 +0.1
2,493,393 - SGL_RS13480 0.64 -0.1
2,493,565 + +0.6
2,493,746 + SGL_RS13485 0.29 -0.6
2,493,748 - SGL_RS13485 0.30 +0.1
2,493,788 + SGL_RS13485 0.36 +0.1
2,493,986 + SGL_RS13485 0.71 -1.8
2,494,020 + SGL_RS13485 0.77 -0.1
2,494,027 + SGL_RS13485 0.78 -0.3
2,494,384 - SGL_RS13490 0.15 -0.4
2,494,392 - SGL_RS13490 0.16 -0.1
2,494,398 + SGL_RS13490 0.16 +0.4
2,494,405 + SGL_RS13490 0.17 -1.4
2,494,423 - SGL_RS13490 0.18 -0.6
2,494,757 + SGL_RS13490 0.47 +0.0
2,495,050 - SGL_RS13490 0.71 +0.3
2,495,050 - SGL_RS13490 0.71 -1.0
2,495,050 - SGL_RS13490 0.71 -1.2
2,495,056 + SGL_RS13490 0.72 -1.0

Or see this region's nucleotide sequence