Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_00380 and NOLOHH_00385 overlap by 11 nucleotides NOLOHH_00385 and NOLOHH_00390 are separated by 8 nucleotides NOLOHH_00390 and NOLOHH_00395 are separated by 72 nucleotides NOLOHH_00395 and NOLOHH_00400 are separated by 596 nucleotides NOLOHH_00400 and hipB are separated by 14 nucleotides
NOLOHH_00380: NOLOHH_00380 - hypothetical protein, at 22,550 to 22,792
_00380
NOLOHH_00385: NOLOHH_00385 - hypothetical protein, at 22,782 to 23,051
_00385
NOLOHH_00390: NOLOHH_00390 - hypothetical protein, at 23,060 to 23,608
_00390
NOLOHH_00395: NOLOHH_00395 - molecular chaperone DnaJ, at 23,681 to 24,196
_00395
NOLOHH_00400: NOLOHH_00400 - DNA-binding protein, at 24,793 to 25,119
_00400
NOLOHH_00405: hipB - XRE family transcriptional regulator, at 25,134 to 25,415
hipB
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 22.815 kb on - strand, within NOLOHH_00385 at 23.022 kb on - strand, within NOLOHH_00385 at 23.118 kb on - strand, within NOLOHH_00390 at 23.121 kb on - strand, within NOLOHH_00390 at 23.284 kb on - strand, within NOLOHH_00390 at 23.414 kb on - strand, within NOLOHH_00390 at 23.418 kb on - strand, within NOLOHH_00390 at 23.462 kb on + strand, within NOLOHH_00390 at 23.465 kb on - strand, within NOLOHH_00390 at 23.634 kb on - strand at 23.655 kb on + strand at 23.656 kb on - strand at 23.740 kb on - strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.791 kb on + strand, within NOLOHH_00395 at 23.840 kb on - strand, within NOLOHH_00395 at 23.867 kb on - strand, within NOLOHH_00395 at 23.945 kb on - strand, within NOLOHH_00395 at 23.974 kb on - strand, within NOLOHH_00395 at 24.103 kb on - strand, within NOLOHH_00395 at 24.124 kb on - strand, within NOLOHH_00395 at 24.177 kb on - strand at 24.296 kb on - strand at 24.376 kb on + strand at 24.376 kb on + strand at 24.377 kb on - strand at 24.380 kb on + strand at 24.380 kb on + strand at 24.381 kb on - strand at 24.437 kb on - strand at 24.437 kb on - strand at 24.526 kb on + strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.581 kb on - strand at 24.585 kb on + strand at 24.586 kb on - strand at 24.591 kb on + strand at 24.592 kb on - strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.597 kb on - strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.602 kb on + strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.603 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.608 kb on - strand at 24.613 kb on + strand at 24.614 kb on - strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.626 kb on + strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.627 kb on - strand at 24.631 kb on + strand at 24.703 kb on - strand at 24.703 kb on - strand at 24.706 kb on + strand at 24.794 kb on + strand at 24.794 kb on + strand at 24.795 kb on - strand at 24.795 kb on - strand at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.840 kb on + strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.841 kb on - strand, within NOLOHH_00400 at 24.871 kb on - strand, within NOLOHH_00400 at 24.894 kb on - strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.897 kb on + strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.898 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.959 kb on - strand, within NOLOHH_00400 at 24.967 kb on + strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.968 kb on - strand, within NOLOHH_00400 at 24.988 kb on + strand, within NOLOHH_00400 at 24.989 kb on - strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.006 kb on + strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.007 kb on - strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.031 kb on + strand, within NOLOHH_00400 at 25.032 kb on - strand, within NOLOHH_00400 at 25.104 kb on - strand at 25.104 kb on - strand at 25.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 22,815 - NOLOHH_00385 0.12 -2.8 23,022 - NOLOHH_00385 0.89 -2.5 23,118 - NOLOHH_00390 0.11 -0.9 23,121 - NOLOHH_00390 0.11 -0.6 23,284 - NOLOHH_00390 0.41 -1.4 23,414 - NOLOHH_00390 0.64 -0.6 23,418 - NOLOHH_00390 0.65 -0.1 23,462 + NOLOHH_00390 0.73 -2.7 23,465 - NOLOHH_00390 0.74 -0.6 23,634 - -0.7 23,655 + -0.2 23,656 - -1.2 23,740 - NOLOHH_00395 0.11 -1.5 23,791 + NOLOHH_00395 0.21 -2.0 23,791 + NOLOHH_00395 0.21 +0.4 23,840 - NOLOHH_00395 0.31 -0.8 23,867 - NOLOHH_00395 0.36 -1.6 23,945 - NOLOHH_00395 0.51 +0.5 23,974 - NOLOHH_00395 0.57 -0.8 24,103 - NOLOHH_00395 0.82 +0.1 24,124 - NOLOHH_00395 0.86 -0.3 24,177 - -0.2 24,296 - -0.2 24,376 + +0.7 24,376 + +0.2 24,377 - -0.4 24,380 + -0.2 24,380 + +1.0 24,381 - -0.2 24,437 - +0.0 24,437 - -0.3 24,526 + -0.6 24,581 - -0.3 24,581 - -0.0 24,581 - +0.8 24,581 - -0.1 24,581 - -0.2 24,585 + -1.3 24,586 - +0.4 24,591 + +0.2 24,592 - -0.8 24,596 + -0.2 24,596 + -1.1 24,596 + +1.2 24,596 + -1.0 24,596 + -0.4 24,596 + +0.1 24,596 + -0.4 24,597 - +1.0 24,597 - +0.3 24,597 - -0.4 24,597 - +0.2 24,597 - -0.8 24,597 - -0.8 24,597 - +0.6 24,597 - +0.2 24,597 - +0.8 24,597 - -0.1 24,597 - -0.1 24,597 - +0.0 24,597 - +0.8 24,597 - -0.7 24,597 - -0.3 24,602 + +0.7 24,602 + +0.1 24,602 + -0.4 24,602 + +0.3 24,602 + +0.4 24,602 + -0.6 24,602 + +0.7 24,602 + -1.3 24,603 - -1.0 24,603 - -0.8 24,603 - +0.6 24,603 - -0.3 24,603 - -0.7 24,603 - -1.9 24,603 - -1.3 24,603 - +0.4 24,603 - -1.1 24,603 - -0.7 24,603 - -0.3 24,603 - +0.4 24,603 - -0.7 24,603 - +0.6 24,608 - -0.2 24,608 - -0.2 24,608 - -0.8 24,613 + -0.5 24,614 - -0.4 24,626 + -0.3 24,626 + -0.1 24,626 + -0.9 24,626 + +0.3 24,627 - +0.1 24,627 - +0.2 24,627 - +0.0 24,627 - +0.4 24,631 + -0.5 24,703 - +0.6 24,703 - +0.7 24,706 + -0.1 24,794 + -0.8 24,794 + +0.9 24,795 - +0.1 24,795 - -0.2 24,840 + NOLOHH_00400 0.14 -0.9 24,840 + NOLOHH_00400 0.14 -0.3 24,840 + NOLOHH_00400 0.14 +0.8 24,840 + NOLOHH_00400 0.14 +1.0 24,841 - NOLOHH_00400 0.15 -0.4 24,841 - NOLOHH_00400 0.15 -0.2 24,841 - NOLOHH_00400 0.15 -0.7 24,841 - NOLOHH_00400 0.15 -0.2 24,841 - NOLOHH_00400 0.15 -0.0 24,841 - NOLOHH_00400 0.15 -0.3 24,871 - NOLOHH_00400 0.24 +0.0 24,894 - NOLOHH_00400 0.31 +0.2 24,897 + NOLOHH_00400 0.32 -0.3 24,897 + NOLOHH_00400 0.32 -2.2 24,898 - NOLOHH_00400 0.32 +0.4 24,898 - NOLOHH_00400 0.32 -1.0 24,959 - NOLOHH_00400 0.51 -0.2 24,959 - NOLOHH_00400 0.51 +0.3 24,967 + NOLOHH_00400 0.53 -0.6 24,968 - NOLOHH_00400 0.54 +0.6 24,968 - NOLOHH_00400 0.54 -0.2 24,968 - NOLOHH_00400 0.54 +1.4 24,988 + NOLOHH_00400 0.60 +0.3 24,989 - NOLOHH_00400 0.60 +0.8 25,006 + NOLOHH_00400 0.65 +1.1 25,006 + NOLOHH_00400 0.65 +0.8 25,006 + NOLOHH_00400 0.65 -1.2 25,007 - NOLOHH_00400 0.65 -0.4 25,007 - NOLOHH_00400 0.65 +0.6 25,031 + NOLOHH_00400 0.73 +0.9 25,031 + NOLOHH_00400 0.73 -0.9 25,032 - NOLOHH_00400 0.73 -0.3 25,104 - +0.2 25,104 - +0.2 25,138 + +0.3
Or see this region's nucleotide sequence