Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03855 and SGL_RS19775 are separated by 162 nucleotides SGL_RS19775 and SGL_RS03865 are separated by 34 nucleotides
SGL_RS03855: SGL_RS03855 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 417,201 to 418,541
_RS03855
SGL_RS19775: SGL_RS19775 - TerB family tellurite resistance protein, at 418,704 to 419,126
_RS19775
SGL_RS03865: SGL_RS03865 - calcium/sodium antiporter, at 419,161 to 420,264
_RS03865
Position (kb) 418
419
420 Strain fitness (log2 ratio) -1
0
1
2 at 417.753 kb on - strand, within SGL_RS03855 at 417.777 kb on - strand, within SGL_RS03855 at 417.777 kb on - strand, within SGL_RS03855 at 417.780 kb on + strand, within SGL_RS03855 at 417.780 kb on + strand, within SGL_RS03855 at 417.788 kb on - strand, within SGL_RS03855 at 417.795 kb on - strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.838 kb on + strand, within SGL_RS03855 at 417.846 kb on - strand, within SGL_RS03855 at 417.906 kb on + strand, within SGL_RS03855 at 417.914 kb on - strand, within SGL_RS03855 at 417.941 kb on - strand, within SGL_RS03855 at 418.001 kb on + strand, within SGL_RS03855 at 418.193 kb on + strand, within SGL_RS03855 at 418.198 kb on + strand, within SGL_RS03855 at 418.198 kb on + strand, within SGL_RS03855 at 418.204 kb on - strand, within SGL_RS03855 at 418.206 kb on - strand, within SGL_RS03855 at 418.432 kb on + strand at 418.473 kb on - strand at 418.483 kb on - strand at 418.616 kb on + strand at 418.656 kb on + strand at 418.789 kb on + strand, within SGL_RS19775 at 418.907 kb on + strand, within SGL_RS19775 at 418.968 kb on + strand, within SGL_RS19775 at 418.970 kb on + strand, within SGL_RS19775 at 418.978 kb on - strand, within SGL_RS19775 at 418.978 kb on - strand, within SGL_RS19775 at 418.978 kb on - strand, within SGL_RS19775 at 418.978 kb on - strand, within SGL_RS19775 at 419.029 kb on + strand, within SGL_RS19775 at 419.040 kb on + strand, within SGL_RS19775 at 419.048 kb on - strand, within SGL_RS19775 at 419.048 kb on - strand, within SGL_RS19775 at 419.099 kb on + strand at 419.099 kb on + strand at 419.107 kb on - strand at 419.341 kb on - strand, within SGL_RS03865 at 419.414 kb on - strand, within SGL_RS03865 at 419.466 kb on - strand, within SGL_RS03865 at 419.894 kb on + strand, within SGL_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8 remove 417,753 - SGL_RS03855 0.41 -0.6 417,777 - SGL_RS03855 0.43 -0.3 417,777 - SGL_RS03855 0.43 -0.1 417,780 + SGL_RS03855 0.43 -0.1 417,780 + SGL_RS03855 0.43 +0.8 417,788 - SGL_RS03855 0.44 -0.0 417,795 - SGL_RS03855 0.44 -0.5 417,838 + SGL_RS03855 0.48 -0.7 417,838 + SGL_RS03855 0.48 +0.1 417,838 + SGL_RS03855 0.48 -0.3 417,846 - SGL_RS03855 0.48 +0.8 417,906 + SGL_RS03855 0.53 +2.0 417,914 - SGL_RS03855 0.53 +0.4 417,941 - SGL_RS03855 0.55 -0.8 418,001 + SGL_RS03855 0.60 -0.1 418,193 + SGL_RS03855 0.74 +0.1 418,198 + SGL_RS03855 0.74 +1.1 418,198 + SGL_RS03855 0.74 +1.1 418,204 - SGL_RS03855 0.75 +0.0 418,206 - SGL_RS03855 0.75 -0.1 418,432 + -0.2 418,473 - -0.4 418,483 - +0.5 418,616 + -0.6 418,656 + -1.2 418,789 + SGL_RS19775 0.20 -1.5 418,907 + SGL_RS19775 0.48 -1.0 418,968 + SGL_RS19775 0.62 -0.4 418,970 + SGL_RS19775 0.63 -0.0 418,978 - SGL_RS19775 0.65 -1.4 418,978 - SGL_RS19775 0.65 +0.5 418,978 - SGL_RS19775 0.65 -0.9 418,978 - SGL_RS19775 0.65 -0.6 419,029 + SGL_RS19775 0.77 -0.9 419,040 + SGL_RS19775 0.79 -1.0 419,048 - SGL_RS19775 0.81 +0.1 419,048 - SGL_RS19775 0.81 -0.5 419,099 + -0.3 419,099 + -0.7 419,107 - -1.7 419,341 - SGL_RS03865 0.16 -0.8 419,414 - SGL_RS03865 0.23 -0.4 419,466 - SGL_RS03865 0.28 -0.6 419,894 + SGL_RS03865 0.66 -0.5
Or see this region's nucleotide sequence