Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18330

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18325 and SGL_RS18330 are separated by 143 nucleotidesSGL_RS18330 and SGL_RS18335 are separated by 45 nucleotidesSGL_RS18335 and SGL_RS18340 are separated by 17 nucleotides SGL_RS18325: SGL_RS18325 - NAD(P)/FAD-dependent oxidoreductase, at 3,559,199 to 3,560,179 _RS18325 SGL_RS18330: SGL_RS18330 - hypothetical protein, at 3,560,323 to 3,560,709 _RS18330 SGL_RS18335: SGL_RS18335 - hypothetical protein, at 3,560,755 to 3,561,144 _RS18335 SGL_RS18340: SGL_RS18340 - hypothetical protein, at 3,561,162 to 3,561,665 _RS18340 Position (kb) 3560 3561Strain fitness (log2 ratio) -2 -1 0 1at 3559.392 kb on + strand, within SGL_RS18325at 3559.416 kb on - strand, within SGL_RS18325at 3559.628 kb on + strand, within SGL_RS18325at 3559.636 kb on + strand, within SGL_RS18325at 3559.654 kb on - strand, within SGL_RS18325at 3559.723 kb on + strand, within SGL_RS18325at 3559.769 kb on + strand, within SGL_RS18325at 3559.791 kb on - strand, within SGL_RS18325at 3559.845 kb on + strand, within SGL_RS18325at 3559.913 kb on + strand, within SGL_RS18325at 3559.986 kb on - strand, within SGL_RS18325at 3560.099 kb on - strandat 3560.259 kb on - strandat 3560.275 kb on + strandat 3560.465 kb on + strand, within SGL_RS18330at 3560.500 kb on + strand, within SGL_RS18330at 3560.542 kb on - strand, within SGL_RS18330at 3560.623 kb on + strand, within SGL_RS18330at 3560.623 kb on + strand, within SGL_RS18330at 3560.631 kb on - strand, within SGL_RS18330at 3560.667 kb on + strand, within SGL_RS18330at 3560.744 kb on + strandat 3560.800 kb on - strand, within SGL_RS18335at 3560.957 kb on + strand, within SGL_RS18335at 3561.372 kb on + strand, within SGL_RS18340

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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3,559,392 + SGL_RS18325 0.20 -0.8
3,559,416 - SGL_RS18325 0.22 +0.2
3,559,628 + SGL_RS18325 0.44 -0.7
3,559,636 + SGL_RS18325 0.45 +0.0
3,559,654 - SGL_RS18325 0.46 +0.2
3,559,723 + SGL_RS18325 0.53 +0.9
3,559,769 + SGL_RS18325 0.58 +0.0
3,559,791 - SGL_RS18325 0.60 -0.6
3,559,845 + SGL_RS18325 0.66 +0.6
3,559,913 + SGL_RS18325 0.73 -1.3
3,559,986 - SGL_RS18325 0.80 -0.3
3,560,099 - -0.2
3,560,259 - -0.1
3,560,275 + -2.2
3,560,465 + SGL_RS18330 0.37 -0.9
3,560,500 + SGL_RS18330 0.46 -0.6
3,560,542 - SGL_RS18330 0.57 -0.4
3,560,623 + SGL_RS18330 0.78 -1.1
3,560,623 + SGL_RS18330 0.78 -0.7
3,560,631 - SGL_RS18330 0.80 -0.7
3,560,667 + SGL_RS18330 0.89 -0.3
3,560,744 + +0.1
3,560,800 - SGL_RS18335 0.12 +0.3
3,560,957 + SGL_RS18335 0.52 +0.3
3,561,372 + SGL_RS18340 0.42 -0.3

Or see this region's nucleotide sequence