Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15570

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15565 and SGL_RS15570 are separated by 89 nucleotidesSGL_RS15570 and SGL_RS15575 are separated by 116 nucleotidesSGL_RS15575 and SGL_RS15580 are separated by 35 nucleotides SGL_RS15565: SGL_RS15565 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 2,940,566 to 2,941,666 _RS15565 SGL_RS15570: SGL_RS15570 - AI-2E family transporter, at 2,941,756 to 2,942,883 _RS15570 SGL_RS15575: SGL_RS15575 - creatininase family protein, at 2,943,000 to 2,943,734 _RS15575 SGL_RS15580: SGL_RS15580 - hypothetical protein, at 2,943,770 to 2,944,201 _RS15580 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -2 -1 0 1at 2940.802 kb on + strand, within SGL_RS15565at 2940.845 kb on + strand, within SGL_RS15565at 2940.853 kb on + strand, within SGL_RS15565at 2941.006 kb on + strand, within SGL_RS15565at 2941.166 kb on + strand, within SGL_RS15565at 2941.280 kb on - strand, within SGL_RS15565at 2941.296 kb on + strand, within SGL_RS15565at 2941.304 kb on - strand, within SGL_RS15565at 2941.601 kb on + strandat 2941.728 kb on + strandat 2941.735 kb on - strandat 2941.736 kb on - strandat 2941.736 kb on - strandat 2941.878 kb on - strand, within SGL_RS15570at 2942.065 kb on + strand, within SGL_RS15570at 2942.143 kb on - strand, within SGL_RS15570at 2942.442 kb on - strand, within SGL_RS15570at 2942.461 kb on - strand, within SGL_RS15570at 2942.488 kb on - strand, within SGL_RS15570at 2942.619 kb on + strand, within SGL_RS15570at 2942.631 kb on + strand, within SGL_RS15570at 2942.786 kb on + strandat 2942.808 kb on + strandat 2942.819 kb on + strandat 2942.900 kb on - strandat 2943.069 kb on + strandat 2943.082 kb on - strand, within SGL_RS15575at 2943.198 kb on - strand, within SGL_RS15575at 2943.265 kb on + strand, within SGL_RS15575at 2943.273 kb on - strand, within SGL_RS15575at 2943.273 kb on - strand, within SGL_RS15575at 2943.465 kb on - strand, within SGL_RS15575at 2943.497 kb on + strand, within SGL_RS15575at 2943.624 kb on + strand, within SGL_RS15575at 2943.627 kb on - strand, within SGL_RS15575at 2943.632 kb on - strand, within SGL_RS15575at 2943.881 kb on - strand, within SGL_RS15580

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Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
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2,940,802 + SGL_RS15565 0.21 +0.1
2,940,845 + SGL_RS15565 0.25 -0.5
2,940,853 + SGL_RS15565 0.26 +0.2
2,941,006 + SGL_RS15565 0.40 +0.6
2,941,166 + SGL_RS15565 0.54 -0.2
2,941,280 - SGL_RS15565 0.65 +0.5
2,941,296 + SGL_RS15565 0.66 +0.0
2,941,304 - SGL_RS15565 0.67 +0.7
2,941,601 + +0.2
2,941,728 + -0.5
2,941,735 - +0.1
2,941,736 - -0.6
2,941,736 - -0.2
2,941,878 - SGL_RS15570 0.11 -0.6
2,942,065 + SGL_RS15570 0.27 -2.2
2,942,143 - SGL_RS15570 0.34 -1.0
2,942,442 - SGL_RS15570 0.61 -1.3
2,942,461 - SGL_RS15570 0.62 -0.2
2,942,488 - SGL_RS15570 0.65 -0.6
2,942,619 + SGL_RS15570 0.77 -0.8
2,942,631 + SGL_RS15570 0.78 -0.8
2,942,786 + -0.4
2,942,808 + -0.5
2,942,819 + -1.7
2,942,900 - -0.6
2,943,069 + -0.4
2,943,082 - SGL_RS15575 0.11 -0.4
2,943,198 - SGL_RS15575 0.27 -0.8
2,943,265 + SGL_RS15575 0.36 -0.5
2,943,273 - SGL_RS15575 0.37 -0.2
2,943,273 - SGL_RS15575 0.37 -0.2
2,943,465 - SGL_RS15575 0.63 -0.8
2,943,497 + SGL_RS15575 0.68 +0.2
2,943,624 + SGL_RS15575 0.85 +0.5
2,943,627 - SGL_RS15575 0.85 -0.5
2,943,632 - SGL_RS15575 0.86 +0.2
2,943,881 - SGL_RS15580 0.26 -0.0

Or see this region's nucleotide sequence