Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09440

Experiment: growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09430 and SGL_RS09435 are separated by 51 nucleotidesSGL_RS09435 and SGL_RS09440 are separated by 202 nucleotidesSGL_RS09440 and SGL_RS09445 are separated by 53 nucleotidesSGL_RS09445 and SGL_RS09450 overlap by 4 nucleotidesSGL_RS09450 and SGL_RS09455 are separated by 224 nucleotides SGL_RS09430: SGL_RS09430 - leucyl aminopeptidase, at 1,618,127 to 1,619,710 _RS09430 SGL_RS09435: SGL_RS09435 - tRNA-Phe, at 1,619,762 to 1,619,834 _RS09435 SGL_RS09440: SGL_RS09440 - hypothetical protein, at 1,620,037 to 1,620,222 _RS09440 SGL_RS09445: SGL_RS09445 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 1,620,276 to 1,620,539 _RS09445 SGL_RS09450: SGL_RS09450 - Txe/YoeB family addiction module toxin, at 1,620,536 to 1,620,796 _RS09450 SGL_RS09455: SGL_RS09455 - ABC transporter permease, at 1,621,021 to 1,621,881 _RS09455 Position (kb) 1620 1621Strain fitness (log2 ratio) -1 0 1at 1619.118 kb on - strand, within SGL_RS09430at 1619.200 kb on - strand, within SGL_RS09430at 1619.341 kb on - strand, within SGL_RS09430at 1619.342 kb on - strand, within SGL_RS09430at 1619.410 kb on + strand, within SGL_RS09430at 1619.443 kb on - strand, within SGL_RS09430at 1619.556 kb on - strandat 1619.578 kb on - strandat 1619.635 kb on - strandat 1619.665 kb on - strandat 1619.849 kb on + strandat 1619.872 kb on + strandat 1619.991 kb on - strandat 1620.180 kb on + strand, within SGL_RS09440at 1620.358 kb on + strand, within SGL_RS09445at 1620.358 kb on + strand, within SGL_RS09445at 1620.366 kb on - strand, within SGL_RS09445at 1620.412 kb on - strand, within SGL_RS09445at 1620.735 kb on - strand, within SGL_RS09450at 1620.774 kb on + strandat 1620.947 kb on + strandat 1620.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media supplemented with 2mM sodum metaarsenite but diluted to prevent light attenuation
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1,619,118 - SGL_RS09430 0.63 +0.1
1,619,200 - SGL_RS09430 0.68 -0.4
1,619,341 - SGL_RS09430 0.77 -0.5
1,619,342 - SGL_RS09430 0.77 -0.4
1,619,410 + SGL_RS09430 0.81 +0.1
1,619,443 - SGL_RS09430 0.83 -0.6
1,619,556 - +0.1
1,619,578 - +0.0
1,619,635 - -0.3
1,619,665 - +0.2
1,619,849 + +0.2
1,619,872 + -0.0
1,619,991 - +0.0
1,620,180 + SGL_RS09440 0.77 +0.4
1,620,358 + SGL_RS09445 0.31 -0.1
1,620,358 + SGL_RS09445 0.31 -0.0
1,620,366 - SGL_RS09445 0.34 -0.2
1,620,412 - SGL_RS09445 0.52 +0.2
1,620,735 - SGL_RS09450 0.76 -0.3
1,620,774 + -0.0
1,620,947 + -0.1
1,620,969 - -0.1

Or see this region's nucleotide sequence