Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06727

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06725 and MPMX19_06726 overlap by 4 nucleotidesMPMX19_06726 and MPMX19_06727 are separated by 14 nucleotidesMPMX19_06727 and MPMX19_06728 are separated by 45 nucleotides MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632 _06725 MPMX19_06726: MPMX19_06726 - dTDP-4-dehydrorhamnose reductase, at 302,629 to 303,531 _06726 MPMX19_06727: MPMX19_06727 - Glucose-1-phosphate thymidylyltransferase 1, at 303,546 to 304,409 _06727 MPMX19_06728: MPMX19_06728 - UDP-glucose 4-epimerase, at 304,455 to 305,411 _06728 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1at 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 304.408 kb on - strandat 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.659 kb on + strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.660 kb on - strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.680 kb on + strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.681 kb on - strand, within MPMX19_06728at 304.713 kb on + strand, within MPMX19_06728at 304.713 kb on + strand, within MPMX19_06728at 304.714 kb on - strand, within MPMX19_06728at 304.714 kb on - strand, within MPMX19_06728at 304.827 kb on + strand, within MPMX19_06728at 304.827 kb on + strand, within MPMX19_06728at 304.827 kb on + strand, within MPMX19_06728at 304.827 kb on + strand, within MPMX19_06728at 304.827 kb on + strand, within MPMX19_06728at 304.828 kb on - strand, within MPMX19_06728at 304.828 kb on - strand, within MPMX19_06728at 304.828 kb on - strand, within MPMX19_06728at 304.828 kb on - strand, within MPMX19_06728at 304.863 kb on + strand, within MPMX19_06728at 304.863 kb on + strand, within MPMX19_06728at 304.863 kb on + strand, within MPMX19_06728at 304.863 kb on + strand, within MPMX19_06728at 304.863 kb on + strand, within MPMX19_06728at 304.864 kb on - strand, within MPMX19_06728at 304.864 kb on - strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.902 kb on + strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.903 kb on - strand, within MPMX19_06728at 304.944 kb on + strand, within MPMX19_06728at 304.944 kb on + strand, within MPMX19_06728at 304.944 kb on + strand, within MPMX19_06728at 304.944 kb on + strand, within MPMX19_06728at 304.944 kb on + strand, within MPMX19_06728at 304.945 kb on - strand, within MPMX19_06728at 304.945 kb on - strand, within MPMX19_06728at 304.945 kb on - strand, within MPMX19_06728at 304.945 kb on - strand, within MPMX19_06728at 304.945 kb on - strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.995 kb on + strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 304.996 kb on - strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.079 kb on + strand, within MPMX19_06728at 305.080 kb on - strand, within MPMX19_06728at 305.080 kb on - strand, within MPMX19_06728at 305.080 kb on - strand, within MPMX19_06728at 305.080 kb on - strand, within MPMX19_06728at 305.080 kb on - strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.112 kb on + strand, within MPMX19_06728at 305.113 kb on - strand, within MPMX19_06728at 305.113 kb on - strand, within MPMX19_06728at 305.113 kb on - strand, within MPMX19_06728at 305.113 kb on - strand, within MPMX19_06728at 305.385 kb on + strandat 305.385 kb on + strandat 305.385 kb on + strandat 305.385 kb on + strandat 305.385 kb on + strandat 305.386 kb on - strandat 305.386 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
302,585 + +0.1
302,585 + -0.7
302,585 + -0.8
302,585 + -0.2
302,585 + -0.1
304,408 - +1.1
304,659 + MPMX19_06728 0.21 -2.2
304,659 + MPMX19_06728 0.21 -0.3
304,659 + MPMX19_06728 0.21 -0.8
304,659 + MPMX19_06728 0.21 +0.1
304,659 + MPMX19_06728 0.21 +1.0
304,659 + MPMX19_06728 0.21 -0.8
304,659 + MPMX19_06728 0.21 -0.0
304,659 + MPMX19_06728 0.21 -3.0
304,660 - MPMX19_06728 0.21 -1.7
304,660 - MPMX19_06728 0.21 +0.1
304,660 - MPMX19_06728 0.21 +0.8
304,660 - MPMX19_06728 0.21 -2.4
304,660 - MPMX19_06728 0.21 +0.5
304,660 - MPMX19_06728 0.21 -0.3
304,680 + MPMX19_06728 0.24 +0.1
304,680 + MPMX19_06728 0.24 -0.8
304,680 + MPMX19_06728 0.24 -0.0
304,680 + MPMX19_06728 0.24 +1.0
304,680 + MPMX19_06728 0.24 -0.2
304,680 + MPMX19_06728 0.24 +1.3
304,680 + MPMX19_06728 0.24 +1.0
304,680 + MPMX19_06728 0.24 -0.1
304,680 + MPMX19_06728 0.24 -1.6
304,680 + MPMX19_06728 0.24 -1.4
304,680 + MPMX19_06728 0.24 -0.7
304,680 + MPMX19_06728 0.24 +1.0
304,680 + MPMX19_06728 0.24 -0.1
304,680 + MPMX19_06728 0.24 -0.7
304,680 + MPMX19_06728 0.24 -1.8
304,681 - MPMX19_06728 0.24 +0.6
304,681 - MPMX19_06728 0.24 -0.8
304,681 - MPMX19_06728 0.24 -0.6
304,681 - MPMX19_06728 0.24 -0.5
304,681 - MPMX19_06728 0.24 -1.7
304,681 - MPMX19_06728 0.24 +0.9
304,681 - MPMX19_06728 0.24 +0.4
304,681 - MPMX19_06728 0.24 -0.0
304,713 + MPMX19_06728 0.27 -1.5
304,713 + MPMX19_06728 0.27 -1.5
304,714 - MPMX19_06728 0.27 -0.1
304,714 - MPMX19_06728 0.27 -0.6
304,827 + MPMX19_06728 0.39 -1.1
304,827 + MPMX19_06728 0.39 +0.6
304,827 + MPMX19_06728 0.39 -1.9
304,827 + MPMX19_06728 0.39 -0.8
304,827 + MPMX19_06728 0.39 +0.8
304,828 - MPMX19_06728 0.39 +0.3
304,828 - MPMX19_06728 0.39 -1.5
304,828 - MPMX19_06728 0.39 +0.3
304,828 - MPMX19_06728 0.39 -1.5
304,863 + MPMX19_06728 0.43 -0.1
304,863 + MPMX19_06728 0.43 -1.0
304,863 + MPMX19_06728 0.43 -1.3
304,863 + MPMX19_06728 0.43 -0.2
304,863 + MPMX19_06728 0.43 -1.5
304,864 - MPMX19_06728 0.43 -0.8
304,864 - MPMX19_06728 0.43 -2.3
304,902 + MPMX19_06728 0.47 +1.0
304,902 + MPMX19_06728 0.47 +0.4
304,902 + MPMX19_06728 0.47 -0.2
304,902 + MPMX19_06728 0.47 -0.7
304,902 + MPMX19_06728 0.47 -1.4
304,902 + MPMX19_06728 0.47 -0.2
304,902 + MPMX19_06728 0.47 +0.5
304,902 + MPMX19_06728 0.47 -2.1
304,903 - MPMX19_06728 0.47 +0.5
304,903 - MPMX19_06728 0.47 -0.2
304,903 - MPMX19_06728 0.47 +0.2
304,903 - MPMX19_06728 0.47 +0.3
304,903 - MPMX19_06728 0.47 -1.0
304,903 - MPMX19_06728 0.47 -0.6
304,903 - MPMX19_06728 0.47 -0.9
304,903 - MPMX19_06728 0.47 -0.9
304,903 - MPMX19_06728 0.47 -2.2
304,944 + MPMX19_06728 0.51 +0.4
304,944 + MPMX19_06728 0.51 -0.7
304,944 + MPMX19_06728 0.51 -0.6
304,944 + MPMX19_06728 0.51 -0.3
304,944 + MPMX19_06728 0.51 -0.0
304,945 - MPMX19_06728 0.51 -0.9
304,945 - MPMX19_06728 0.51 -0.2
304,945 - MPMX19_06728 0.51 -1.6
304,945 - MPMX19_06728 0.51 -0.9
304,945 - MPMX19_06728 0.51 -0.0
304,995 + MPMX19_06728 0.56 -0.0
304,995 + MPMX19_06728 0.56 -0.9
304,995 + MPMX19_06728 0.56 -0.8
304,995 + MPMX19_06728 0.56 -2.0
304,995 + MPMX19_06728 0.56 -0.7
304,995 + MPMX19_06728 0.56 -0.8
304,995 + MPMX19_06728 0.56 -0.8
304,995 + MPMX19_06728 0.56 -2.1
304,995 + MPMX19_06728 0.56 -0.9
304,995 + MPMX19_06728 0.56 +0.2
304,995 + MPMX19_06728 0.56 -0.8
304,995 + MPMX19_06728 0.56 -1.7
304,995 + MPMX19_06728 0.56 -2.2
304,995 + MPMX19_06728 0.56 -0.3
304,995 + MPMX19_06728 0.56 -0.6
304,995 + MPMX19_06728 0.56 -0.8
304,995 + MPMX19_06728 0.56 -1.6
304,996 - MPMX19_06728 0.57 +0.7
304,996 - MPMX19_06728 0.57 -0.5
304,996 - MPMX19_06728 0.57 +0.8
304,996 - MPMX19_06728 0.57 +0.4
304,996 - MPMX19_06728 0.57 -1.9
304,996 - MPMX19_06728 0.57 -1.0
304,996 - MPMX19_06728 0.57 -1.2
304,996 - MPMX19_06728 0.57 -0.0
304,996 - MPMX19_06728 0.57 -1.1
304,996 - MPMX19_06728 0.57 -1.0
305,079 + MPMX19_06728 0.65 -0.2
305,079 + MPMX19_06728 0.65 -1.3
305,079 + MPMX19_06728 0.65 +1.5
305,079 + MPMX19_06728 0.65 +0.1
305,079 + MPMX19_06728 0.65 -0.3
305,079 + MPMX19_06728 0.65 -0.2
305,079 + MPMX19_06728 0.65 +0.1
305,080 - MPMX19_06728 0.65 -0.8
305,080 - MPMX19_06728 0.65 +0.2
305,080 - MPMX19_06728 0.65 -0.7
305,080 - MPMX19_06728 0.65 -1.7
305,080 - MPMX19_06728 0.65 -1.6
305,112 + MPMX19_06728 0.69 -1.0
305,112 + MPMX19_06728 0.69 -0.6
305,112 + MPMX19_06728 0.69 -0.1
305,112 + MPMX19_06728 0.69 -0.0
305,112 + MPMX19_06728 0.69 +0.3
305,112 + MPMX19_06728 0.69 -0.2
305,112 + MPMX19_06728 0.69 -0.2
305,112 + MPMX19_06728 0.69 -0.3
305,113 - MPMX19_06728 0.69 +0.3
305,113 - MPMX19_06728 0.69 -0.2
305,113 - MPMX19_06728 0.69 -0.2
305,113 - MPMX19_06728 0.69 +0.3
305,385 + -0.3
305,385 + -1.0
305,385 + -2.2
305,385 + -1.0
305,385 + -2.0
305,386 - +0.5
305,386 - -1.7

Or see this region's nucleotide sequence