Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06699 and MPMX19_06700 are separated by 10 nucleotides MPMX19_06700 and MPMX19_06701 are separated by 96 nucleotides MPMX19_06701 and MPMX19_06702 are separated by 40 nucleotides MPMX19_06702 and MPMX19_06703 are separated by 82 nucleotides MPMX19_06703 and MPMX19_06704 are separated by 297 nucleotides
MPMX19_06699: MPMX19_06699 - Nickel/cobalt efflux system RcnA, at 267,962 to 268,831
_06699
MPMX19_06700: MPMX19_06700 - Copper-sensing transcriptional repressor RicR, at 268,842 to 269,111
_06700
MPMX19_06701: MPMX19_06701 - hypothetical protein, at 269,208 to 269,687
_06701
MPMX19_06702: MPMX19_06702 - Cadmium-transporting ATPase, at 269,728 to 272,016
_06702
MPMX19_06703: MPMX19_06703 - HTH-type transcriptional regulator HmrR, at 272,099 to 272,554
_06703
MPMX19_06704: MPMX19_06704 - Sensor histidine kinase RcsC, at 272,852 to 275,101
_06704
Position (kb) 269
270
271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 269.042 kb on + strand, within MPMX19_06700 at 269.042 kb on + strand, within MPMX19_06700 at 269.043 kb on - strand, within MPMX19_06700 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.283 kb on - strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.835 kb on + strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 270.794 kb on + strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 272.065 kb on + strand at 272.066 kb on - strand at 272.066 kb on - strand at 272.066 kb on - strand at 272.195 kb on + strand, within MPMX19_06703 at 272.195 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.658 kb on + strand at 272.658 kb on + strand at 272.658 kb on + strand at 272.658 kb on + strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.729 kb on + strand at 272.730 kb on + strand at 272.730 kb on + strand at 272.730 kb on + strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.788 kb on + strand at 272.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 268,843 + -0.1 268,843 + -0.1 268,843 + -0.0 268,843 + -0.3 268,843 + +0.5 268,844 - -1.1 268,844 - -0.3 268,844 - -0.1 268,844 - +1.1 268,844 - -2.0 268,849 + -0.5 268,849 + +0.4 268,849 + +0.3 268,849 + +0.1 268,849 + -2.4 268,849 + +0.4 268,849 + +0.1 268,849 + +0.5 268,849 + -0.5 268,849 + -0.5 268,849 + +0.5 268,849 + -1.0 268,849 + -1.3 268,850 - -1.7 268,850 - -1.0 268,850 - +0.6 268,850 - +0.3 269,042 + MPMX19_06700 0.74 -0.4 269,042 + MPMX19_06700 0.74 -0.5 269,043 - MPMX19_06700 0.74 -1.3 269,263 + MPMX19_06701 0.11 -1.2 269,263 + MPMX19_06701 0.11 -0.2 269,263 + MPMX19_06701 0.11 -0.2 269,263 + MPMX19_06701 0.11 -0.0 269,263 + MPMX19_06701 0.11 -1.0 269,264 - MPMX19_06701 0.12 -0.2 269,264 - MPMX19_06701 0.12 -0.0 269,264 - MPMX19_06701 0.12 -1.2 269,264 - MPMX19_06701 0.12 -1.5 269,264 - MPMX19_06701 0.12 -0.0 269,264 - MPMX19_06701 0.12 +0.3 269,264 - MPMX19_06701 0.12 +0.2 269,264 - MPMX19_06701 0.12 -1.6 269,282 + MPMX19_06701 0.15 -1.1 269,282 + MPMX19_06701 0.15 -0.8 269,282 + MPMX19_06701 0.15 +0.3 269,283 - MPMX19_06701 0.16 -0.3 269,395 + MPMX19_06701 0.39 +0.2 269,395 + MPMX19_06701 0.39 +0.7 269,395 + MPMX19_06701 0.39 -0.6 269,395 + MPMX19_06701 0.39 -0.2 269,395 + MPMX19_06701 0.39 +0.4 269,395 + MPMX19_06701 0.39 -0.4 269,395 + MPMX19_06701 0.39 -0.3 269,395 + MPMX19_06701 0.39 +0.3 269,395 + MPMX19_06701 0.39 -1.2 269,395 + MPMX19_06701 0.39 -0.4 269,395 + MPMX19_06701 0.39 +1.0 269,396 - MPMX19_06701 0.39 -1.0 269,396 - MPMX19_06701 0.39 +0.2 269,396 - MPMX19_06701 0.39 -1.3 269,396 - MPMX19_06701 0.39 +0.3 269,396 - MPMX19_06701 0.39 -0.4 269,835 + -0.2 269,836 - -0.1 269,836 - +0.8 269,836 - +0.3 269,884 + -2.2 269,884 + +0.5 269,884 + +0.9 269,884 + -0.7 269,884 + -0.8 269,884 + +0.5 269,884 + -1.6 269,884 + -0.2 269,884 + -0.9 269,884 + -0.7 269,884 + -0.6 269,884 + -0.1 269,884 + +0.2 269,884 + -0.2 269,884 + -0.3 269,884 + +0.7 269,884 + -0.6 269,884 + +0.4 269,884 + +1.0 269,884 + -1.5 269,884 + -0.3 269,884 + -0.3 269,884 + -2.0 269,884 + -0.3 269,884 + +0.0 269,884 + +0.3 269,884 + -0.3 269,884 + +0.8 269,884 + -0.2 269,884 + +0.0 269,884 + -0.0 269,884 + +1.0 269,884 + -1.0 269,884 + +0.7 269,884 + -1.0 269,884 + -0.0 269,884 + -1.5 269,884 + -0.2 269,884 + -0.8 269,884 + -0.9 269,884 + -0.7 269,885 - +0.7 269,885 - +0.7 269,885 - -1.4 269,885 - +0.7 269,885 - -2.4 269,885 - -0.2 269,885 - -0.8 269,885 - -0.3 269,885 - -1.5 269,885 - -1.3 269,885 - -0.2 269,885 - -1.7 269,885 - -1.6 269,885 - -1.2 269,885 - -0.3 269,885 - -0.8 269,885 - +0.1 269,885 - -0.7 269,885 - -0.8 269,885 - +0.2 269,885 - +1.3 269,885 - -0.2 269,885 - -1.2 269,885 - -0.3 269,885 - -0.0 269,885 - +0.9 269,885 - -1.3 269,885 - -1.5 269,885 - -1.6 269,885 - -1.2 269,885 - -0.8 269,885 - +0.8 269,885 - -0.3 269,885 - -0.2 269,885 - -1.6 269,885 - +1.1 269,885 - -0.3 269,885 - -0.5 269,885 - -0.0 269,885 - -2.6 270,794 + MPMX19_06702 0.47 +0.1 270,795 - MPMX19_06702 0.47 +0.2 270,795 - MPMX19_06702 0.47 -0.7 270,795 - MPMX19_06702 0.47 -0.3 270,795 - MPMX19_06702 0.47 +0.8 270,878 + MPMX19_06702 0.50 +0.4 270,878 + MPMX19_06702 0.50 -1.1 270,878 + MPMX19_06702 0.50 -1.0 270,878 + MPMX19_06702 0.50 -0.4 270,878 + MPMX19_06702 0.50 -1.6 270,878 + MPMX19_06702 0.50 -0.5 270,878 + MPMX19_06702 0.50 +0.9 270,878 + MPMX19_06702 0.50 +0.6 270,878 + MPMX19_06702 0.50 +0.5 270,879 - MPMX19_06702 0.50 +0.2 270,879 - MPMX19_06702 0.50 -0.7 270,879 - MPMX19_06702 0.50 -0.6 270,879 - MPMX19_06702 0.50 -1.0 270,879 - MPMX19_06702 0.50 -1.0 270,879 - MPMX19_06702 0.50 -0.0 270,879 - MPMX19_06702 0.50 -0.3 270,879 - MPMX19_06702 0.50 +0.2 270,879 - MPMX19_06702 0.50 -0.7 272,065 + +1.1 272,066 - -0.8 272,066 - -0.6 272,066 - -0.5 272,195 + MPMX19_06703 0.21 +0.4 272,195 + MPMX19_06703 0.21 -1.6 272,198 + MPMX19_06703 0.22 -1.0 272,198 + MPMX19_06703 0.22 -1.0 272,198 + MPMX19_06703 0.22 +0.7 272,198 + MPMX19_06703 0.22 +0.7 272,198 + MPMX19_06703 0.22 -0.1 272,198 + MPMX19_06703 0.22 -1.5 272,198 + MPMX19_06703 0.22 +0.2 272,198 + MPMX19_06703 0.22 +0.4 272,198 + MPMX19_06703 0.22 +0.1 272,198 + MPMX19_06703 0.22 +0.2 272,198 + MPMX19_06703 0.22 +0.3 272,198 + MPMX19_06703 0.22 -1.9 272,198 + MPMX19_06703 0.22 +1.1 272,199 - MPMX19_06703 0.22 +0.3 272,199 - MPMX19_06703 0.22 -2.2 272,199 - MPMX19_06703 0.22 -1.0 272,199 - MPMX19_06703 0.22 -0.6 272,199 - MPMX19_06703 0.22 -0.0 272,199 - MPMX19_06703 0.22 +0.2 272,199 - MPMX19_06703 0.22 -0.0 272,255 + MPMX19_06703 0.34 -0.4 272,255 + MPMX19_06703 0.34 -1.0 272,255 + MPMX19_06703 0.34 +0.4 272,255 + MPMX19_06703 0.34 -0.6 272,255 + MPMX19_06703 0.34 -1.6 272,255 + MPMX19_06703 0.34 -0.3 272,256 - MPMX19_06703 0.34 -0.0 272,256 - MPMX19_06703 0.34 +0.5 272,256 - MPMX19_06703 0.34 -1.7 272,256 - MPMX19_06703 0.34 -0.8 272,256 - MPMX19_06703 0.34 -0.3 272,256 - MPMX19_06703 0.34 +0.0 272,256 - MPMX19_06703 0.34 -0.8 272,256 - MPMX19_06703 0.34 +0.5 272,256 - MPMX19_06703 0.34 -0.5 272,256 - MPMX19_06703 0.34 +1.9 272,256 - MPMX19_06703 0.34 +1.0 272,256 - MPMX19_06703 0.34 +0.3 272,256 - MPMX19_06703 0.34 +0.1 272,658 + -0.2 272,658 + -1.0 272,658 + -0.5 272,658 + +1.6 272,659 - -0.3 272,659 - +0.4 272,659 - -0.8 272,659 - -1.7 272,659 - +2.0 272,659 - -2.6 272,659 - +0.7 272,696 + -0.5 272,696 + -0.5 272,696 + +1.2 272,696 + -0.6 272,696 + -0.3 272,696 + +0.2 272,696 + +0.4 272,697 - -0.1 272,697 - -2.2 272,697 - +0.4 272,697 - +1.6 272,697 - -0.3 272,697 - +0.8 272,697 - -0.6 272,697 - -0.3 272,698 + +0.3 272,698 + +1.1 272,698 + +0.1 272,698 + -0.7 272,698 + -0.9 272,698 + -0.2 272,698 + -1.6 272,698 + -2.0 272,698 + +0.0 272,698 + -0.7 272,699 - +0.8 272,699 - +0.5 272,699 - -0.4 272,699 - -0.6 272,699 - -1.7 272,699 - +0.8 272,699 - +0.0 272,699 - -1.0 272,699 - -2.7 272,699 - -0.3 272,699 - -0.1 272,699 - -1.0 272,699 - -0.1 272,699 - -0.6 272,729 + +0.0 272,730 + -1.0 272,730 + +0.7 272,730 + -1.0 272,731 - -2.3 272,731 - -1.4 272,731 - +0.5 272,731 - -0.4 272,788 + +0.6 272,788 + -0.2
Or see this region's nucleotide sequence