Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06222

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06221 and MPMX19_06222 are separated by 56 nucleotidesMPMX19_06222 and MPMX19_06223 are separated by 213 nucleotides MPMX19_06221: MPMX19_06221 - L-2-keto-3-deoxyarabonate dehydratase, at 405,879 to 406,805 _06221 MPMX19_06222: MPMX19_06222 - 6-deoxy-6-sulfogluconolactonase, at 406,862 to 407,746 _06222 MPMX19_06223: MPMX19_06223 - HTH-type transcriptional regulator GbpR, at 407,960 to 408,952 _06223 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2at 406.078 kb on + strand, within MPMX19_06221at 406.078 kb on + strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.114 kb on + strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.811 kb on + strandat 407.189 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.220 kb on + strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.221 kb on - strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.250 kb on + strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.251 kb on - strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.298 kb on + strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.299 kb on - strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.343 kb on + strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.344 kb on - strand, within MPMX19_06222at 407.651 kb on - strand, within MPMX19_06222at 407.661 kb on + strandat 407.661 kb on + strandat 407.661 kb on + strandat 407.662 kb on - strandat 407.662 kb on - strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.753 kb on + strandat 407.754 kb on - strandat 407.754 kb on - strandat 407.754 kb on - strandat 407.824 kb on - strandat 407.863 kb on - strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.906 kb on + strandat 407.906 kb on + strandat 407.907 kb on - strandat 408.182 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
406,078 + MPMX19_06221 0.21 +0.8
406,078 + MPMX19_06221 0.21 -0.3
406,079 - MPMX19_06221 0.22 -0.6
406,079 - MPMX19_06221 0.22 -0.8
406,114 + MPMX19_06221 0.25 -1.0
406,115 - MPMX19_06221 0.25 -0.7
406,115 - MPMX19_06221 0.25 -0.5
406,303 + MPMX19_06221 0.46 -1.1
406,303 + MPMX19_06221 0.46 -0.3
406,303 + MPMX19_06221 0.46 -1.7
406,303 + MPMX19_06221 0.46 +1.0
406,304 - MPMX19_06221 0.46 +0.8
406,304 - MPMX19_06221 0.46 +0.6
406,304 - MPMX19_06221 0.46 -0.3
406,304 - MPMX19_06221 0.46 +0.7
406,471 + MPMX19_06221 0.64 -0.1
406,471 + MPMX19_06221 0.64 +0.4
406,472 - MPMX19_06221 0.64 +0.7
406,472 - MPMX19_06221 0.64 +0.4
406,811 + -0.6
407,189 + MPMX19_06222 0.37 +1.0
407,220 + MPMX19_06222 0.40 +0.7
407,220 + MPMX19_06222 0.40 +0.8
407,220 + MPMX19_06222 0.40 -0.7
407,220 + MPMX19_06222 0.40 -0.1
407,220 + MPMX19_06222 0.40 -0.1
407,220 + MPMX19_06222 0.40 -0.2
407,220 + MPMX19_06222 0.40 +0.2
407,220 + MPMX19_06222 0.40 -1.2
407,220 + MPMX19_06222 0.40 -0.9
407,221 - MPMX19_06222 0.41 -1.7
407,221 - MPMX19_06222 0.41 +1.4
407,221 - MPMX19_06222 0.41 -1.2
407,250 + MPMX19_06222 0.44 +1.1
407,250 + MPMX19_06222 0.44 +1.4
407,250 + MPMX19_06222 0.44 +0.6
407,250 + MPMX19_06222 0.44 +0.1
407,250 + MPMX19_06222 0.44 -1.3
407,250 + MPMX19_06222 0.44 +0.6
407,251 - MPMX19_06222 0.44 +1.4
407,251 - MPMX19_06222 0.44 -1.8
407,251 - MPMX19_06222 0.44 -0.8
407,251 - MPMX19_06222 0.44 +0.6
407,251 - MPMX19_06222 0.44 +0.2
407,251 - MPMX19_06222 0.44 +0.4
407,251 - MPMX19_06222 0.44 -1.3
407,251 - MPMX19_06222 0.44 +0.9
407,251 - MPMX19_06222 0.44 -0.7
407,251 - MPMX19_06222 0.44 -0.7
407,298 + MPMX19_06222 0.49 -1.1
407,298 + MPMX19_06222 0.49 -0.1
407,299 - MPMX19_06222 0.49 +0.0
407,299 - MPMX19_06222 0.49 -1.0
407,299 - MPMX19_06222 0.49 -0.6
407,299 - MPMX19_06222 0.49 +0.3
407,299 - MPMX19_06222 0.49 -0.5
407,299 - MPMX19_06222 0.49 +0.3
407,299 - MPMX19_06222 0.49 -1.0
407,299 - MPMX19_06222 0.49 +0.3
407,299 - MPMX19_06222 0.49 -0.3
407,299 - MPMX19_06222 0.49 +0.2
407,299 - MPMX19_06222 0.49 -0.8
407,299 - MPMX19_06222 0.49 -1.4
407,343 + MPMX19_06222 0.54 +1.0
407,343 + MPMX19_06222 0.54 +0.1
407,343 + MPMX19_06222 0.54 -1.3
407,344 - MPMX19_06222 0.54 -1.2
407,344 - MPMX19_06222 0.54 +0.0
407,651 - MPMX19_06222 0.89 +2.0
407,661 + -1.8
407,661 + +0.2
407,661 + -0.4
407,662 - +1.5
407,662 - +0.6
407,753 + +0.2
407,753 + -1.2
407,753 + +0.3
407,753 + -0.3
407,753 + +0.1
407,753 + +0.0
407,754 - +1.0
407,754 - -0.2
407,754 - +0.0
407,824 - -0.6
407,863 - -0.3
407,873 + +0.0
407,873 + -0.2
407,874 - +0.6
407,874 - +1.0
407,906 + -1.8
407,906 + -0.5
407,907 - -2.0
408,182 + MPMX19_06223 0.22 -1.0
408,458 + MPMX19_06223 0.50 -0.9
408,458 + MPMX19_06223 0.50 +1.5
408,458 + MPMX19_06223 0.50 +0.3
408,458 + MPMX19_06223 0.50 -0.4
408,459 - MPMX19_06223 0.50 -1.0
408,459 - MPMX19_06223 0.50 -0.2
408,459 - MPMX19_06223 0.50 +0.7
408,459 - MPMX19_06223 0.50 -0.2
408,459 - MPMX19_06223 0.50 -1.2
408,480 - MPMX19_06223 0.52 +0.7
408,480 - MPMX19_06223 0.52 +1.0

Or see this region's nucleotide sequence