Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04027

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04026 and MPMX19_04027 are separated by 236 nucleotidesMPMX19_04027 and MPMX19_04028 are separated by 30 nucleotides MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474 _04026 MPMX19_04027: MPMX19_04027 - Inosine-5'-monophosphate dehydrogenase, at 322,711 to 323,412 _04027 MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738 _04028 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.284 kb on + strand, within MPMX19_04026at 322.284 kb on + strand, within MPMX19_04026at 322.285 kb on - strand, within MPMX19_04026at 322.285 kb on - strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.316 kb on + strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.317 kb on - strand, within MPMX19_04026at 322.409 kb on + strandat 322.410 kb on - strandat 322.410 kb on - strandat 322.410 kb on - strandat 322.472 kb on + strandat 322.472 kb on + strandat 322.472 kb on + strandat 322.473 kb on - strandat 322.473 kb on - strandat 322.485 kb on + strandat 322.486 kb on - strandat 322.535 kb on + strandat 322.535 kb on + strandat 322.536 kb on - strandat 322.603 kb on - strandat 322.630 kb on + strandat 322.642 kb on - strandat 322.671 kb on + strandat 322.671 kb on + strandat 322.671 kb on + strandat 322.672 kb on - strandat 322.672 kb on - strandat 322.672 kb on - strandat 323.319 kb on - strand, within MPMX19_04027at 323.410 kb on + strandat 323.410 kb on + strandat 323.410 kb on + strandat 323.411 kb on - strandat 323.415 kb on + strandat 323.415 kb on + strandat 323.415 kb on + strandat 323.416 kb on - strandat 323.416 kb on - strandat 323.416 kb on - strandat 323.495 kb on + strandat 323.495 kb on + strandat 323.496 kb on - strandat 323.496 kb on - strandat 323.496 kb on - strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.645 kb on + strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.723 kb on + strand, within MPMX19_04028at 323.871 kb on - strand, within MPMX19_04028at 323.969 kb on + strand, within MPMX19_04028at 323.969 kb on + strand, within MPMX19_04028at 323.970 kb on - strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.021 kb on - strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
322,284 + MPMX19_04026 0.78 -1.6
322,284 + MPMX19_04026 0.78 +0.4
322,285 - MPMX19_04026 0.78 -1.2
322,285 - MPMX19_04026 0.78 -0.4
322,316 + MPMX19_04026 0.82 -0.5
322,316 + MPMX19_04026 0.82 +0.4
322,316 + MPMX19_04026 0.82 -1.9
322,316 + MPMX19_04026 0.82 -1.3
322,316 + MPMX19_04026 0.82 -1.1
322,316 + MPMX19_04026 0.82 +1.1
322,316 + MPMX19_04026 0.82 -0.9
322,316 + MPMX19_04026 0.82 -0.1
322,316 + MPMX19_04026 0.82 -1.5
322,317 - MPMX19_04026 0.82 -0.7
322,317 - MPMX19_04026 0.82 +0.0
322,317 - MPMX19_04026 0.82 -0.9
322,317 - MPMX19_04026 0.82 -2.1
322,317 - MPMX19_04026 0.82 -1.5
322,317 - MPMX19_04026 0.82 +0.3
322,317 - MPMX19_04026 0.82 -2.0
322,409 + +0.6
322,410 - +0.0
322,410 - -0.6
322,410 - -0.2
322,472 + -0.4
322,472 + -0.3
322,472 + +0.2
322,473 - -1.0
322,473 - +0.9
322,485 + -1.0
322,486 - +1.8
322,535 + +0.4
322,535 + -1.0
322,536 - +0.5
322,603 - +0.6
322,630 + -0.5
322,642 - -0.3
322,671 + -0.4
322,671 + -0.3
322,671 + -0.4
322,672 - -1.4
322,672 - +0.4
322,672 - -0.6
323,319 - MPMX19_04027 0.87 -1.5
323,410 + +0.2
323,410 + +2.4
323,410 + -0.1
323,411 - +0.6
323,415 + -0.3
323,415 + +0.0
323,415 + +0.0
323,416 - -2.2
323,416 - -0.1
323,416 - -1.6
323,495 + -1.0
323,495 + -0.4
323,496 - -1.5
323,496 - -0.9
323,496 - -1.1
323,501 + -0.5
323,501 + +0.7
323,501 + -0.7
323,501 + -0.8
323,501 + -1.0
323,501 + +1.0
323,501 + +0.4
323,502 - -0.3
323,502 - -1.6
323,502 - -0.8
323,502 - +0.2
323,502 - -1.8
323,502 - +0.6
323,502 - +0.0
323,502 - +1.1
323,502 - -0.9
323,502 - -1.8
323,502 - -3.0
323,502 - +0.0
323,645 + MPMX19_04028 0.16 -1.2
323,646 - MPMX19_04028 0.16 +1.0
323,646 - MPMX19_04028 0.16 -2.2
323,646 - MPMX19_04028 0.16 -0.1
323,646 - MPMX19_04028 0.16 -0.2
323,646 - MPMX19_04028 0.16 +0.9
323,723 + MPMX19_04028 0.22 +1.3
323,871 - MPMX19_04028 0.33 +0.0
323,969 + MPMX19_04028 0.41 -0.6
323,969 + MPMX19_04028 0.41 -0.6
323,970 - MPMX19_04028 0.41 +0.0
324,020 + MPMX19_04028 0.45 -0.5
324,020 + MPMX19_04028 0.45 -1.7
324,020 + MPMX19_04028 0.45 +0.4
324,021 - MPMX19_04028 0.45 +0.3
324,176 + MPMX19_04028 0.57 +0.8
324,176 + MPMX19_04028 0.57 +0.0
324,176 + MPMX19_04028 0.57 -0.0
324,176 + MPMX19_04028 0.57 +0.4
324,176 + MPMX19_04028 0.57 -0.3
324,177 - MPMX19_04028 0.57 -0.8
324,177 - MPMX19_04028 0.57 -0.1
324,177 - MPMX19_04028 0.57 -1.7
324,177 - MPMX19_04028 0.57 -1.5
324,227 + MPMX19_04028 0.60 -0.7
324,227 + MPMX19_04028 0.60 -0.7
324,227 + MPMX19_04028 0.60 -0.3
324,227 + MPMX19_04028 0.60 -1.5
324,227 + MPMX19_04028 0.60 -1.1
324,227 + MPMX19_04028 0.60 -0.2
324,227 + MPMX19_04028 0.60 +0.2
324,227 + MPMX19_04028 0.60 +0.3
324,227 + MPMX19_04028 0.60 +0.6
324,227 + MPMX19_04028 0.60 +0.4
324,227 + MPMX19_04028 0.60 +0.8
324,228 - MPMX19_04028 0.61 -0.3
324,228 - MPMX19_04028 0.61 +0.5
324,228 - MPMX19_04028 0.61 -0.2
324,228 - MPMX19_04028 0.61 -0.3

Or see this region's nucleotide sequence