Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03680

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03678 and MPMX19_03679 are separated by 85 nucleotidesMPMX19_03679 and MPMX19_03680 are separated by 11 nucleotidesMPMX19_03680 and MPMX19_03681 are separated by 116 nucleotides MPMX19_03678: MPMX19_03678 - Methyl-accepting chemotaxis protein, at 1,116,051 to 1,117,727 _03678 MPMX19_03679: MPMX19_03679 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 1,117,813 to 1,118,433 _03679 MPMX19_03680: MPMX19_03680 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,118,445 to 1,119,599 _03680 MPMX19_03681: MPMX19_03681 - hypothetical protein, at 1,119,716 to 1,121,386 _03681 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1117.447 kb on + strand, within MPMX19_03678at 1117.448 kb on - strand, within MPMX19_03678at 1117.448 kb on - strand, within MPMX19_03678at 1117.459 kb on + strand, within MPMX19_03678at 1117.459 kb on + strand, within MPMX19_03678at 1117.459 kb on + strand, within MPMX19_03678at 1117.460 kb on - strand, within MPMX19_03678at 1117.555 kb on + strand, within MPMX19_03678at 1117.555 kb on + strand, within MPMX19_03678at 1117.555 kb on + strand, within MPMX19_03678at 1117.555 kb on + strand, within MPMX19_03678at 1117.556 kb on - strand, within MPMX19_03678at 1117.556 kb on - strand, within MPMX19_03678at 1117.556 kb on - strand, within MPMX19_03678at 1117.740 kb on + strandat 1117.740 kb on + strandat 1117.740 kb on + strandat 1117.741 kb on - strandat 1117.741 kb on - strandat 1117.741 kb on - strandat 1117.741 kb on - strandat 1117.741 kb on - strandat 1117.741 kb on - strandat 1118.507 kb on + strandat 1118.630 kb on + strand, within MPMX19_03680at 1118.771 kb on - strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.908 kb on + strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1118.909 kb on - strand, within MPMX19_03680at 1119.124 kb on + strand, within MPMX19_03680at 1119.124 kb on + strand, within MPMX19_03680at 1119.124 kb on + strand, within MPMX19_03680at 1119.124 kb on + strand, within MPMX19_03680at 1119.217 kb on + strand, within MPMX19_03680at 1119.217 kb on + strand, within MPMX19_03680at 1119.217 kb on + strand, within MPMX19_03680at 1119.217 kb on + strand, within MPMX19_03680at 1119.218 kb on - strand, within MPMX19_03680at 1119.218 kb on - strand, within MPMX19_03680at 1119.218 kb on - strand, within MPMX19_03680at 1119.218 kb on - strand, within MPMX19_03680at 1119.218 kb on - strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.313 kb on + strand, within MPMX19_03680at 1119.314 kb on - strand, within MPMX19_03680at 1119.314 kb on - strand, within MPMX19_03680at 1119.314 kb on - strand, within MPMX19_03680at 1119.314 kb on - strand, within MPMX19_03680at 1119.320 kb on + strand, within MPMX19_03680at 1119.320 kb on + strand, within MPMX19_03680at 1119.365 kb on + strand, within MPMX19_03680at 1119.365 kb on + strand, within MPMX19_03680at 1119.365 kb on + strand, within MPMX19_03680at 1119.365 kb on + strand, within MPMX19_03680at 1119.366 kb on - strand, within MPMX19_03680at 1119.366 kb on - strand, within MPMX19_03680at 1119.367 kb on + strand, within MPMX19_03680at 1119.367 kb on + strand, within MPMX19_03680at 1119.367 kb on + strand, within MPMX19_03680at 1119.367 kb on + strand, within MPMX19_03680at 1119.367 kb on + strand, within MPMX19_03680at 1119.368 kb on - strand, within MPMX19_03680at 1119.368 kb on - strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.433 kb on + strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.434 kb on - strand, within MPMX19_03680at 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.645 kb on + strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1119.646 kb on - strandat 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.173 kb on + strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.174 kb on - strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.242 kb on + strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.243 kb on - strand, within MPMX19_03681at 1120.251 kb on + strand, within MPMX19_03681at 1120.252 kb on - strand, within MPMX19_03681

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,117,447 + MPMX19_03678 0.83 -1.1
1,117,448 - MPMX19_03678 0.83 +0.1
1,117,448 - MPMX19_03678 0.83 +0.1
1,117,459 + MPMX19_03678 0.84 +0.2
1,117,459 + MPMX19_03678 0.84 +0.4
1,117,459 + MPMX19_03678 0.84 -1.3
1,117,460 - MPMX19_03678 0.84 -0.6
1,117,555 + MPMX19_03678 0.90 +0.4
1,117,555 + MPMX19_03678 0.90 -0.0
1,117,555 + MPMX19_03678 0.90 -1.3
1,117,555 + MPMX19_03678 0.90 +0.6
1,117,556 - MPMX19_03678 0.90 +0.0
1,117,556 - MPMX19_03678 0.90 -1.4
1,117,556 - MPMX19_03678 0.90 -1.1
1,117,740 + -0.9
1,117,740 + +1.6
1,117,740 + +0.4
1,117,741 - +1.1
1,117,741 - +1.1
1,117,741 - +1.5
1,117,741 - -0.6
1,117,741 - -0.4
1,117,741 - -0.1
1,118,507 + +0.1
1,118,630 + MPMX19_03680 0.16 +1.4
1,118,771 - MPMX19_03680 0.28 -1.6
1,118,908 + MPMX19_03680 0.40 -0.6
1,118,908 + MPMX19_03680 0.40 -1.2
1,118,908 + MPMX19_03680 0.40 +0.7
1,118,908 + MPMX19_03680 0.40 -1.1
1,118,908 + MPMX19_03680 0.40 +0.9
1,118,908 + MPMX19_03680 0.40 -0.2
1,118,908 + MPMX19_03680 0.40 -0.2
1,118,908 + MPMX19_03680 0.40 -0.2
1,118,908 + MPMX19_03680 0.40 -0.7
1,118,908 + MPMX19_03680 0.40 -0.0
1,118,908 + MPMX19_03680 0.40 -0.6
1,118,909 - MPMX19_03680 0.40 -0.7
1,118,909 - MPMX19_03680 0.40 +0.6
1,118,909 - MPMX19_03680 0.40 -0.9
1,118,909 - MPMX19_03680 0.40 +0.6
1,118,909 - MPMX19_03680 0.40 +0.9
1,118,909 - MPMX19_03680 0.40 -0.6
1,118,909 - MPMX19_03680 0.40 +0.8
1,118,909 - MPMX19_03680 0.40 +1.4
1,118,909 - MPMX19_03680 0.40 -2.3
1,118,909 - MPMX19_03680 0.40 -2.7
1,118,909 - MPMX19_03680 0.40 -0.1
1,118,909 - MPMX19_03680 0.40 -0.2
1,118,909 - MPMX19_03680 0.40 -0.5
1,119,124 + MPMX19_03680 0.59 -0.1
1,119,124 + MPMX19_03680 0.59 +0.4
1,119,124 + MPMX19_03680 0.59 -1.1
1,119,124 + MPMX19_03680 0.59 +1.4
1,119,217 + MPMX19_03680 0.67 +1.0
1,119,217 + MPMX19_03680 0.67 -0.2
1,119,217 + MPMX19_03680 0.67 +0.2
1,119,217 + MPMX19_03680 0.67 -1.1
1,119,218 - MPMX19_03680 0.67 -0.1
1,119,218 - MPMX19_03680 0.67 +0.3
1,119,218 - MPMX19_03680 0.67 -0.6
1,119,218 - MPMX19_03680 0.67 +0.2
1,119,218 - MPMX19_03680 0.67 -1.9
1,119,313 + MPMX19_03680 0.75 +0.4
1,119,313 + MPMX19_03680 0.75 +0.7
1,119,313 + MPMX19_03680 0.75 -1.9
1,119,313 + MPMX19_03680 0.75 +0.4
1,119,313 + MPMX19_03680 0.75 -2.4
1,119,313 + MPMX19_03680 0.75 -0.6
1,119,313 + MPMX19_03680 0.75 +1.1
1,119,313 + MPMX19_03680 0.75 +0.6
1,119,313 + MPMX19_03680 0.75 -2.0
1,119,313 + MPMX19_03680 0.75 +0.8
1,119,313 + MPMX19_03680 0.75 -0.4
1,119,314 - MPMX19_03680 0.75 -1.2
1,119,314 - MPMX19_03680 0.75 +0.1
1,119,314 - MPMX19_03680 0.75 +0.5
1,119,314 - MPMX19_03680 0.75 -1.0
1,119,320 + MPMX19_03680 0.76 +0.3
1,119,320 + MPMX19_03680 0.76 -1.5
1,119,365 + MPMX19_03680 0.80 -0.3
1,119,365 + MPMX19_03680 0.80 -1.6
1,119,365 + MPMX19_03680 0.80 -1.1
1,119,365 + MPMX19_03680 0.80 -1.4
1,119,366 - MPMX19_03680 0.80 -0.3
1,119,366 - MPMX19_03680 0.80 +0.9
1,119,367 + MPMX19_03680 0.80 -0.4
1,119,367 + MPMX19_03680 0.80 +0.9
1,119,367 + MPMX19_03680 0.80 +0.8
1,119,367 + MPMX19_03680 0.80 -0.1
1,119,367 + MPMX19_03680 0.80 -1.8
1,119,368 - MPMX19_03680 0.80 -0.1
1,119,368 - MPMX19_03680 0.80 +0.3
1,119,433 + MPMX19_03680 0.86 -0.9
1,119,433 + MPMX19_03680 0.86 -1.1
1,119,433 + MPMX19_03680 0.86 +2.5
1,119,433 + MPMX19_03680 0.86 -0.9
1,119,433 + MPMX19_03680 0.86 +0.4
1,119,433 + MPMX19_03680 0.86 -0.6
1,119,433 + MPMX19_03680 0.86 +0.1
1,119,433 + MPMX19_03680 0.86 +0.4
1,119,433 + MPMX19_03680 0.86 +0.9
1,119,433 + MPMX19_03680 0.86 +0.4
1,119,434 - MPMX19_03680 0.86 -0.8
1,119,434 - MPMX19_03680 0.86 -0.2
1,119,434 - MPMX19_03680 0.86 +1.6
1,119,434 - MPMX19_03680 0.86 -0.1
1,119,434 - MPMX19_03680 0.86 +0.2
1,119,434 - MPMX19_03680 0.86 -1.0
1,119,434 - MPMX19_03680 0.86 -0.9
1,119,434 - MPMX19_03680 0.86 -1.1
1,119,434 - MPMX19_03680 0.86 +0.5
1,119,645 + +0.4
1,119,645 + -0.9
1,119,645 + +1.6
1,119,645 + -0.5
1,119,645 + +1.1
1,119,645 + +0.3
1,119,645 + +0.2
1,119,645 + -0.9
1,119,645 + -0.6
1,119,645 + -0.6
1,119,645 + +1.2
1,119,645 + -0.8
1,119,645 + -0.3
1,119,645 + -0.3
1,119,645 + -0.5
1,119,645 + +0.6
1,119,645 + +0.1
1,119,645 + -0.6
1,119,645 + +0.4
1,119,645 + -1.6
1,119,645 + +0.1
1,119,645 + -0.5
1,119,645 + -1.1
1,119,645 + -2.0
1,119,645 + -2.1
1,119,645 + -0.4
1,119,645 + +1.2
1,119,645 + +0.4
1,119,645 + -0.9
1,119,646 - -1.5
1,119,646 - -0.0
1,119,646 - +0.0
1,119,646 - -0.6
1,119,646 - +0.4
1,119,646 - -0.7
1,119,646 - -0.1
1,119,646 - +0.1
1,119,646 - -0.8
1,119,646 - -0.1
1,119,646 - -0.7
1,119,646 - -1.9
1,119,646 - -0.1
1,119,646 - -0.1
1,119,646 - -2.6
1,119,646 - -0.4
1,119,646 - +2.9
1,120,173 + MPMX19_03681 0.27 -0.4
1,120,173 + MPMX19_03681 0.27 -1.5
1,120,173 + MPMX19_03681 0.27 -0.2
1,120,173 + MPMX19_03681 0.27 +1.4
1,120,173 + MPMX19_03681 0.27 +0.4
1,120,173 + MPMX19_03681 0.27 -1.9
1,120,173 + MPMX19_03681 0.27 +0.6
1,120,173 + MPMX19_03681 0.27 +0.9
1,120,174 - MPMX19_03681 0.27 +0.4
1,120,174 - MPMX19_03681 0.27 -0.5
1,120,174 - MPMX19_03681 0.27 -0.2
1,120,174 - MPMX19_03681 0.27 -1.4
1,120,174 - MPMX19_03681 0.27 +0.5
1,120,174 - MPMX19_03681 0.27 -0.5
1,120,174 - MPMX19_03681 0.27 -0.0
1,120,174 - MPMX19_03681 0.27 -2.6
1,120,242 + MPMX19_03681 0.31 +0.5
1,120,242 + MPMX19_03681 0.31 +0.6
1,120,242 + MPMX19_03681 0.31 +0.0
1,120,242 + MPMX19_03681 0.31 -0.1
1,120,242 + MPMX19_03681 0.31 +0.3
1,120,242 + MPMX19_03681 0.31 +0.4
1,120,243 - MPMX19_03681 0.32 -1.8
1,120,243 - MPMX19_03681 0.32 -0.2
1,120,243 - MPMX19_03681 0.32 +1.7
1,120,243 - MPMX19_03681 0.32 +0.5
1,120,243 - MPMX19_03681 0.32 -0.6
1,120,243 - MPMX19_03681 0.32 +0.9
1,120,243 - MPMX19_03681 0.32 +0.6
1,120,243 - MPMX19_03681 0.32 +0.5
1,120,251 + MPMX19_03681 0.32 -0.5
1,120,252 - MPMX19_03681 0.32 -0.1

Or see this region's nucleotide sequence