Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03511

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03510 and MPMX19_03511 overlap by 4 nucleotidesMPMX19_03511 and MPMX19_03512 overlap by 4 nucleotidesMPMX19_03512 and MPMX19_03513 are separated by 14 nucleotides MPMX19_03510: MPMX19_03510 - Formate hydrogenlyase subunit 5, at 925,614 to 927,329 _03510 MPMX19_03511: MPMX19_03511 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 927,326 to 928,975 _03511 MPMX19_03512: MPMX19_03512 - Hydrogenase-4 component E, at 928,972 to 929,625 _03512 MPMX19_03513: MPMX19_03513 - Na(+)/H(+) antiporter subunit A, at 929,640 to 931,103 _03513 Position (kb) 927 928 929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 926.350 kb on + strand, within MPMX19_03510at 926.350 kb on + strand, within MPMX19_03510at 926.350 kb on + strand, within MPMX19_03510at 926.350 kb on + strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.351 kb on - strand, within MPMX19_03510at 926.569 kb on + strand, within MPMX19_03510at 926.569 kb on + strand, within MPMX19_03510at 926.569 kb on + strand, within MPMX19_03510at 926.570 kb on - strand, within MPMX19_03510at 926.570 kb on - strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.635 kb on + strand, within MPMX19_03510at 926.636 kb on - strand, within MPMX19_03510at 926.636 kb on - strand, within MPMX19_03510at 926.636 kb on - strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.680 kb on + strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.681 kb on - strand, within MPMX19_03510at 926.858 kb on - strand, within MPMX19_03510at 926.884 kb on + strand, within MPMX19_03510at 926.885 kb on - strand, within MPMX19_03510at 927.020 kb on - strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.094 kb on + strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.095 kb on - strand, within MPMX19_03510at 927.097 kb on + strand, within MPMX19_03510at 927.097 kb on + strand, within MPMX19_03510at 927.097 kb on + strand, within MPMX19_03510at 927.097 kb on + strand, within MPMX19_03510at 927.097 kb on + strand, within MPMX19_03510at 927.098 kb on - strand, within MPMX19_03510at 927.098 kb on - strand, within MPMX19_03510at 927.098 kb on - strand, within MPMX19_03510at 927.098 kb on - strand, within MPMX19_03510at 927.169 kb on + strandat 927.169 kb on + strandat 927.169 kb on + strandat 927.169 kb on + strandat 927.169 kb on + strandat 927.169 kb on + strandat 927.170 kb on - strandat 927.170 kb on - strandat 927.170 kb on - strandat 927.170 kb on - strandat 927.170 kb on - strandat 927.172 kb on + strandat 927.172 kb on + strandat 927.172 kb on + strandat 927.172 kb on + strandat 927.172 kb on + strandat 927.173 kb on - strandat 927.173 kb on - strandat 927.293 kb on - strandat 927.293 kb on - strandat 927.293 kb on - strandat 927.393 kb on + strandat 927.393 kb on + strandat 927.393 kb on + strandat 927.393 kb on + strandat 927.393 kb on + strandat 927.394 kb on - strandat 927.394 kb on - strandat 927.394 kb on - strandat 927.408 kb on + strandat 927.408 kb on + strandat 927.408 kb on + strandat 927.408 kb on + strandat 927.408 kb on + strandat 927.408 kb on + strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.409 kb on - strandat 927.684 kb on + strand, within MPMX19_03511at 927.684 kb on + strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.685 kb on - strand, within MPMX19_03511at 927.843 kb on + strand, within MPMX19_03511at 927.843 kb on + strand, within MPMX19_03511at 927.844 kb on - strand, within MPMX19_03511at 927.990 kb on + strand, within MPMX19_03511at 927.991 kb on - strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.119 kb on + strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.120 kb on - strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.395 kb on + strand, within MPMX19_03511at 928.396 kb on - strand, within MPMX19_03511at 928.434 kb on + strand, within MPMX19_03511at 928.434 kb on + strand, within MPMX19_03511at 928.435 kb on - strand, within MPMX19_03511at 928.435 kb on - strand, within MPMX19_03511at 928.470 kb on + strand, within MPMX19_03511at 928.471 kb on - strand, within MPMX19_03511at 928.471 kb on - strand, within MPMX19_03511at 928.591 kb on - strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.593 kb on + strand, within MPMX19_03511at 928.594 kb on - strand, within MPMX19_03511at 928.594 kb on - strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.647 kb on + strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.648 kb on - strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.659 kb on + strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.660 kb on - strand, within MPMX19_03511at 928.803 kb on + strand, within MPMX19_03511at 928.803 kb on + strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.804 kb on - strand, within MPMX19_03511at 928.961 kb on + strandat 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.396 kb on + strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.397 kb on - strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.453 kb on + strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.454 kb on - strand, within MPMX19_03512at 929.525 kb on + strand, within MPMX19_03512at 929.525 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512at 929.526 kb on - strand, within MPMX19_03512

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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926,350 + MPMX19_03510 0.43 -0.2
926,350 + MPMX19_03510 0.43 +2.4
926,350 + MPMX19_03510 0.43 -1.9
926,350 + MPMX19_03510 0.43 +0.5
926,351 - MPMX19_03510 0.43 +0.7
926,351 - MPMX19_03510 0.43 -0.2
926,351 - MPMX19_03510 0.43 -0.9
926,351 - MPMX19_03510 0.43 -0.9
926,351 - MPMX19_03510 0.43 -1.8
926,351 - MPMX19_03510 0.43 +1.0
926,351 - MPMX19_03510 0.43 -1.5
926,351 - MPMX19_03510 0.43 +0.2
926,569 + MPMX19_03510 0.56 +0.9
926,569 + MPMX19_03510 0.56 +0.5
926,569 + MPMX19_03510 0.56 -0.4
926,570 - MPMX19_03510 0.56 +1.7
926,570 - MPMX19_03510 0.56 -0.6
926,635 + MPMX19_03510 0.59 -0.2
926,635 + MPMX19_03510 0.59 +0.1
926,635 + MPMX19_03510 0.59 -2.9
926,635 + MPMX19_03510 0.59 -0.1
926,635 + MPMX19_03510 0.59 -0.4
926,635 + MPMX19_03510 0.59 -0.6
926,635 + MPMX19_03510 0.59 -1.2
926,636 - MPMX19_03510 0.60 -1.1
926,636 - MPMX19_03510 0.60 +0.8
926,636 - MPMX19_03510 0.60 -0.5
926,680 + MPMX19_03510 0.62 -0.2
926,680 + MPMX19_03510 0.62 +0.2
926,680 + MPMX19_03510 0.62 -2.2
926,680 + MPMX19_03510 0.62 -0.6
926,680 + MPMX19_03510 0.62 -0.9
926,680 + MPMX19_03510 0.62 +0.5
926,680 + MPMX19_03510 0.62 -1.0
926,680 + MPMX19_03510 0.62 -1.5
926,680 + MPMX19_03510 0.62 +0.4
926,681 - MPMX19_03510 0.62 +0.5
926,681 - MPMX19_03510 0.62 -0.8
926,681 - MPMX19_03510 0.62 +0.0
926,681 - MPMX19_03510 0.62 -0.1
926,681 - MPMX19_03510 0.62 +0.7
926,681 - MPMX19_03510 0.62 -0.8
926,681 - MPMX19_03510 0.62 -0.2
926,681 - MPMX19_03510 0.62 -1.2
926,681 - MPMX19_03510 0.62 +0.4
926,858 - MPMX19_03510 0.72 -0.9
926,884 + MPMX19_03510 0.74 -0.3
926,885 - MPMX19_03510 0.74 -2.1
927,020 - MPMX19_03510 0.82 -0.5
927,094 + MPMX19_03510 0.86 -2.3
927,094 + MPMX19_03510 0.86 -1.1
927,094 + MPMX19_03510 0.86 +0.8
927,094 + MPMX19_03510 0.86 -0.1
927,094 + MPMX19_03510 0.86 -1.6
927,094 + MPMX19_03510 0.86 +1.5
927,094 + MPMX19_03510 0.86 -1.0
927,094 + MPMX19_03510 0.86 -0.2
927,094 + MPMX19_03510 0.86 -2.4
927,094 + MPMX19_03510 0.86 -1.1
927,094 + MPMX19_03510 0.86 -0.4
927,094 + MPMX19_03510 0.86 -1.2
927,095 - MPMX19_03510 0.86 -0.3
927,095 - MPMX19_03510 0.86 -0.3
927,095 - MPMX19_03510 0.86 +0.9
927,095 - MPMX19_03510 0.86 -0.6
927,095 - MPMX19_03510 0.86 -0.4
927,095 - MPMX19_03510 0.86 -1.2
927,095 - MPMX19_03510 0.86 +0.1
927,095 - MPMX19_03510 0.86 -1.0
927,095 - MPMX19_03510 0.86 +1.0
927,095 - MPMX19_03510 0.86 +0.9
927,095 - MPMX19_03510 0.86 +0.4
927,095 - MPMX19_03510 0.86 -0.2
927,095 - MPMX19_03510 0.86 -0.6
927,095 - MPMX19_03510 0.86 -1.6
927,095 - MPMX19_03510 0.86 +0.1
927,097 + MPMX19_03510 0.86 +0.7
927,097 + MPMX19_03510 0.86 +0.8
927,097 + MPMX19_03510 0.86 +0.6
927,097 + MPMX19_03510 0.86 -0.6
927,097 + MPMX19_03510 0.86 -0.3
927,098 - MPMX19_03510 0.86 -0.7
927,098 - MPMX19_03510 0.86 -2.2
927,098 - MPMX19_03510 0.86 +0.9
927,098 - MPMX19_03510 0.86 -0.8
927,169 + -0.2
927,169 + +0.4
927,169 + -0.6
927,169 + -1.0
927,169 + -0.3
927,169 + -1.1
927,170 - +0.5
927,170 - +0.7
927,170 - -0.2
927,170 - +0.3
927,170 - -1.1
927,172 + -0.9
927,172 + +0.2
927,172 + +0.5
927,172 + -2.0
927,172 + +0.5
927,173 - -0.6
927,173 - -1.9
927,293 - -1.1
927,293 - +1.2
927,293 - +0.5
927,393 + -0.4
927,393 + +0.6
927,393 + -0.3
927,393 + -1.1
927,393 + -1.3
927,394 - +0.5
927,394 - -1.2
927,394 - +0.4
927,408 + -0.3
927,408 + -0.3
927,408 + -1.3
927,408 + +0.9
927,408 + -0.5
927,408 + -0.8
927,409 - -0.6
927,409 - +1.7
927,409 - -0.4
927,409 - -0.3
927,409 - +1.3
927,409 - -0.4
927,409 - +1.5
927,409 - +0.4
927,409 - +1.7
927,684 + MPMX19_03511 0.22 -1.1
927,684 + MPMX19_03511 0.22 -2.1
927,685 - MPMX19_03511 0.22 +0.8
927,685 - MPMX19_03511 0.22 -0.1
927,685 - MPMX19_03511 0.22 -1.1
927,685 - MPMX19_03511 0.22 -1.2
927,685 - MPMX19_03511 0.22 +1.1
927,685 - MPMX19_03511 0.22 -2.1
927,685 - MPMX19_03511 0.22 -0.6
927,843 + MPMX19_03511 0.31 -0.2
927,843 + MPMX19_03511 0.31 -0.9
927,844 - MPMX19_03511 0.31 +0.9
927,990 + MPMX19_03511 0.40 -0.4
927,991 - MPMX19_03511 0.40 -0.6
928,119 + MPMX19_03511 0.48 -1.2
928,119 + MPMX19_03511 0.48 -1.4
928,119 + MPMX19_03511 0.48 +0.5
928,119 + MPMX19_03511 0.48 -0.6
928,120 - MPMX19_03511 0.48 -0.2
928,120 - MPMX19_03511 0.48 +0.4
928,120 - MPMX19_03511 0.48 +0.2
928,120 - MPMX19_03511 0.48 -0.1
928,120 - MPMX19_03511 0.48 +0.3
928,120 - MPMX19_03511 0.48 -0.6
928,120 - MPMX19_03511 0.48 -0.5
928,395 + MPMX19_03511 0.65 -0.4
928,395 + MPMX19_03511 0.65 +0.6
928,395 + MPMX19_03511 0.65 -2.2
928,396 - MPMX19_03511 0.65 -0.1
928,434 + MPMX19_03511 0.67 -0.2
928,434 + MPMX19_03511 0.67 -0.3
928,435 - MPMX19_03511 0.67 -0.8
928,435 - MPMX19_03511 0.67 -0.3
928,470 + MPMX19_03511 0.69 -0.6
928,471 - MPMX19_03511 0.69 -0.5
928,471 - MPMX19_03511 0.69 -1.2
928,591 - MPMX19_03511 0.77 +0.4
928,593 + MPMX19_03511 0.77 -0.9
928,593 + MPMX19_03511 0.77 -2.0
928,593 + MPMX19_03511 0.77 -0.4
928,593 + MPMX19_03511 0.77 +0.2
928,593 + MPMX19_03511 0.77 -0.2
928,593 + MPMX19_03511 0.77 +0.9
928,593 + MPMX19_03511 0.77 -0.1
928,594 - MPMX19_03511 0.77 -1.9
928,594 - MPMX19_03511 0.77 -1.1
928,647 + MPMX19_03511 0.80 +0.8
928,647 + MPMX19_03511 0.80 -2.0
928,647 + MPMX19_03511 0.80 -0.3
928,648 - MPMX19_03511 0.80 +2.9
928,648 - MPMX19_03511 0.80 -0.3
928,648 - MPMX19_03511 0.80 -1.6
928,648 - MPMX19_03511 0.80 -0.2
928,659 + MPMX19_03511 0.81 -0.4
928,659 + MPMX19_03511 0.81 -1.2
928,659 + MPMX19_03511 0.81 +0.2
928,659 + MPMX19_03511 0.81 -1.0
928,660 - MPMX19_03511 0.81 -0.2
928,660 - MPMX19_03511 0.81 +1.6
928,660 - MPMX19_03511 0.81 +0.4
928,660 - MPMX19_03511 0.81 -0.5
928,660 - MPMX19_03511 0.81 -0.6
928,660 - MPMX19_03511 0.81 -1.2
928,803 + MPMX19_03511 0.90 -0.6
928,803 + MPMX19_03511 0.90 -1.2
928,804 - MPMX19_03511 0.90 +0.1
928,804 - MPMX19_03511 0.90 -2.1
928,804 - MPMX19_03511 0.90 +1.5
928,804 - MPMX19_03511 0.90 -0.1
928,961 + -0.6
929,396 + MPMX19_03512 0.65 -0.4
929,396 + MPMX19_03512 0.65 -1.1
929,396 + MPMX19_03512 0.65 -0.7
929,396 + MPMX19_03512 0.65 -0.2
929,396 + MPMX19_03512 0.65 -2.5
929,397 - MPMX19_03512 0.65 -1.1
929,397 - MPMX19_03512 0.65 -0.8
929,397 - MPMX19_03512 0.65 -0.2
929,397 - MPMX19_03512 0.65 +0.2
929,397 - MPMX19_03512 0.65 -0.9
929,397 - MPMX19_03512 0.65 +0.6
929,397 - MPMX19_03512 0.65 -0.6
929,397 - MPMX19_03512 0.65 +0.5
929,397 - MPMX19_03512 0.65 -1.0
929,397 - MPMX19_03512 0.65 -0.2
929,397 - MPMX19_03512 0.65 +0.5
929,397 - MPMX19_03512 0.65 -0.8
929,397 - MPMX19_03512 0.65 +0.9
929,453 + MPMX19_03512 0.74 +0.7
929,453 + MPMX19_03512 0.74 -0.1
929,453 + MPMX19_03512 0.74 +1.4
929,453 + MPMX19_03512 0.74 -0.7
929,454 - MPMX19_03512 0.74 -1.1
929,454 - MPMX19_03512 0.74 +0.1
929,454 - MPMX19_03512 0.74 -0.6
929,525 + MPMX19_03512 0.85 -0.9
929,525 - MPMX19_03512 0.85 -0.5
929,526 - MPMX19_03512 0.85 -2.4
929,526 - MPMX19_03512 0.85 -1.5
929,526 - MPMX19_03512 0.85 -0.0
929,526 - MPMX19_03512 0.85 -2.0

Or see this region's nucleotide sequence