Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10600

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispE and lolB are separated by 50 nucleotideslolB and OKGIIK_10600 overlap by 4 nucleotidesOKGIIK_10600 and hemA are separated by 91 nucleotides OKGIIK_10590: ispE - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 2,271,608 to 2,273,008 ispE OKGIIK_10595: lolB - lipoprotein insertase outer membrane protein LolB, at 2,273,059 to 2,273,670 lolB OKGIIK_10600: OKGIIK_10600 - Beta-barrel assembly-enhancing protease, at 2,273,667 to 2,275,424 _10600 OKGIIK_10605: hemA - glutamyl-tRNA reductase, at 2,275,516 to 2,276,784 hemA Position (kb) 2273 2274 2275 2276Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2272.738 kb on - strand, within ispEat 2272.738 kb on - strand, within ispEat 2272.738 kb on - strand, within ispEat 2272.903 kb on - strandat 2272.903 kb on - strandat 2272.903 kb on - strandat 2272.903 kb on - strandat 2272.903 kb on - strandat 2272.903 kb on - strandat 2273.052 kb on + strandat 2273.052 kb on + strandat 2273.052 kb on + strandat 2273.052 kb on + strandat 2273.053 kb on - strandat 2273.053 kb on - strandat 2273.053 kb on - strandat 2273.872 kb on + strand, within OKGIIK_10600at 2273.873 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2273.987 kb on - strand, within OKGIIK_10600at 2274.083 kb on - strand, within OKGIIK_10600at 2274.083 kb on - strand, within OKGIIK_10600at 2274.083 kb on - strand, within OKGIIK_10600at 2274.083 kb on - strand, within OKGIIK_10600at 2274.101 kb on - strand, within OKGIIK_10600at 2274.101 kb on - strand, within OKGIIK_10600at 2274.101 kb on - strand, within OKGIIK_10600at 2274.101 kb on - strand, within OKGIIK_10600at 2274.101 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.167 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.185 kb on - strand, within OKGIIK_10600at 2274.239 kb on - strand, within OKGIIK_10600at 2274.239 kb on - strand, within OKGIIK_10600at 2274.239 kb on - strand, within OKGIIK_10600at 2274.239 kb on - strand, within OKGIIK_10600at 2274.362 kb on - strand, within OKGIIK_10600at 2274.362 kb on - strand, within OKGIIK_10600at 2274.362 kb on - strand, within OKGIIK_10600at 2274.362 kb on - strand, within OKGIIK_10600at 2274.362 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.419 kb on - strand, within OKGIIK_10600at 2274.467 kb on - strand, within OKGIIK_10600at 2274.467 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.527 kb on - strand, within OKGIIK_10600at 2274.578 kb on - strand, within OKGIIK_10600at 2274.578 kb on - strand, within OKGIIK_10600at 2274.578 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.608 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.719 kb on - strand, within OKGIIK_10600at 2274.773 kb on - strand, within OKGIIK_10600at 2274.773 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.163 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.166 kb on - strand, within OKGIIK_10600at 2275.365 kb on - strandat 2275.365 kb on - strandat 2275.365 kb on - strandat 2275.409 kb on + strandat 2275.410 kb on - strandat 2275.410 kb on - strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.471 kb on + strandat 2275.472 kb on - strandat 2275.476 kb on + strandat 2275.476 kb on + strandat 2275.476 kb on + strandat 2275.476 kb on + strandat 2275.476 kb on + strandat 2275.476 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,272,738 - ispE OKGIIK_10590 0.81 -0.0
2,272,738 - ispE OKGIIK_10590 0.81 -1.6
2,272,738 - ispE OKGIIK_10590 0.81 -0.8
2,272,903 - -1.3
2,272,903 - +0.2
2,272,903 - -1.8
2,272,903 - -1.1
2,272,903 - -0.3
2,272,903 - -1.7
2,273,052 + +0.2
2,273,052 + -2.8
2,273,052 + -1.6
2,273,052 + -0.1
2,273,053 - +0.7
2,273,053 - +0.6
2,273,053 - -0.3
2,273,872 + OKGIIK_10600 0.12 -2.1
2,273,873 - OKGIIK_10600 0.12 -1.3
2,273,987 - OKGIIK_10600 0.18 +0.2
2,273,987 - OKGIIK_10600 0.18 -2.1
2,273,987 - OKGIIK_10600 0.18 +0.5
2,273,987 - OKGIIK_10600 0.18 -1.2
2,273,987 - OKGIIK_10600 0.18 -0.8
2,273,987 - OKGIIK_10600 0.18 -1.8
2,273,987 - OKGIIK_10600 0.18 -0.9
2,273,987 - OKGIIK_10600 0.18 -1.6
2,274,083 - OKGIIK_10600 0.24 -0.3
2,274,083 - OKGIIK_10600 0.24 -1.9
2,274,083 - OKGIIK_10600 0.24 -1.1
2,274,083 - OKGIIK_10600 0.24 +0.7
2,274,101 - OKGIIK_10600 0.25 -0.8
2,274,101 - OKGIIK_10600 0.25 -1.1
2,274,101 - OKGIIK_10600 0.25 -1.2
2,274,101 - OKGIIK_10600 0.25 +1.2
2,274,101 - OKGIIK_10600 0.25 -1.0
2,274,167 - OKGIIK_10600 0.28 +1.2
2,274,167 - OKGIIK_10600 0.28 -1.1
2,274,167 - OKGIIK_10600 0.28 -0.3
2,274,167 - OKGIIK_10600 0.28 -1.6
2,274,167 - OKGIIK_10600 0.28 -2.8
2,274,167 - OKGIIK_10600 0.28 -1.3
2,274,167 - OKGIIK_10600 0.28 +0.9
2,274,167 - OKGIIK_10600 0.28 -1.9
2,274,167 - OKGIIK_10600 0.28 -1.3
2,274,167 - OKGIIK_10600 0.28 -0.6
2,274,167 - OKGIIK_10600 0.28 -0.5
2,274,167 - OKGIIK_10600 0.28 -1.1
2,274,167 - OKGIIK_10600 0.28 -0.8
2,274,167 - OKGIIK_10600 0.28 -0.8
2,274,167 - OKGIIK_10600 0.28 -0.3
2,274,167 - OKGIIK_10600 0.28 -1.3
2,274,167 - OKGIIK_10600 0.28 -1.1
2,274,167 - OKGIIK_10600 0.28 -1.3
2,274,167 - OKGIIK_10600 0.28 -1.8
2,274,185 - OKGIIK_10600 0.29 -0.3
2,274,185 - OKGIIK_10600 0.29 +0.8
2,274,185 - OKGIIK_10600 0.29 -2.3
2,274,185 - OKGIIK_10600 0.29 -0.3
2,274,185 - OKGIIK_10600 0.29 -2.6
2,274,185 - OKGIIK_10600 0.29 +1.1
2,274,185 - OKGIIK_10600 0.29 -0.8
2,274,185 - OKGIIK_10600 0.29 -0.3
2,274,239 - OKGIIK_10600 0.33 -0.3
2,274,239 - OKGIIK_10600 0.33 -0.8
2,274,239 - OKGIIK_10600 0.33 +2.6
2,274,239 - OKGIIK_10600 0.33 -0.2
2,274,362 - OKGIIK_10600 0.40 -0.1
2,274,362 - OKGIIK_10600 0.40 -1.8
2,274,362 - OKGIIK_10600 0.40 -0.0
2,274,362 - OKGIIK_10600 0.40 -1.1
2,274,362 - OKGIIK_10600 0.40 -1.4
2,274,419 - OKGIIK_10600 0.43 +0.0
2,274,419 - OKGIIK_10600 0.43 -1.0
2,274,419 - OKGIIK_10600 0.43 -1.6
2,274,419 - OKGIIK_10600 0.43 -0.7
2,274,419 - OKGIIK_10600 0.43 -1.1
2,274,419 - OKGIIK_10600 0.43 +2.2
2,274,419 - OKGIIK_10600 0.43 -1.3
2,274,419 - OKGIIK_10600 0.43 -2.2
2,274,419 - OKGIIK_10600 0.43 -2.1
2,274,467 - OKGIIK_10600 0.46 +1.2
2,274,467 - OKGIIK_10600 0.46 +0.2
2,274,527 - OKGIIK_10600 0.49 +0.6
2,274,527 - OKGIIK_10600 0.49 +1.2
2,274,527 - OKGIIK_10600 0.49 -1.6
2,274,527 - OKGIIK_10600 0.49 +0.5
2,274,527 - OKGIIK_10600 0.49 -0.6
2,274,527 - OKGIIK_10600 0.49 +0.9
2,274,527 - OKGIIK_10600 0.49 -0.3
2,274,527 - OKGIIK_10600 0.49 -0.6
2,274,527 - OKGIIK_10600 0.49 +0.0
2,274,527 - OKGIIK_10600 0.49 -1.3
2,274,527 - OKGIIK_10600 0.49 +0.8
2,274,527 - OKGIIK_10600 0.49 +0.2
2,274,527 - OKGIIK_10600 0.49 -2.8
2,274,527 - OKGIIK_10600 0.49 +0.5
2,274,527 - OKGIIK_10600 0.49 -1.8
2,274,527 - OKGIIK_10600 0.49 -0.3
2,274,527 - OKGIIK_10600 0.49 -0.8
2,274,527 - OKGIIK_10600 0.49 +0.2
2,274,527 - OKGIIK_10600 0.49 -0.6
2,274,527 - OKGIIK_10600 0.49 -0.3
2,274,578 - OKGIIK_10600 0.52 -1.8
2,274,578 - OKGIIK_10600 0.52 +0.2
2,274,578 - OKGIIK_10600 0.52 -3.3
2,274,608 - OKGIIK_10600 0.54 -1.9
2,274,608 - OKGIIK_10600 0.54 +0.2
2,274,608 - OKGIIK_10600 0.54 -1.8
2,274,608 - OKGIIK_10600 0.54 -0.8
2,274,608 - OKGIIK_10600 0.54 -3.1
2,274,608 - OKGIIK_10600 0.54 +1.8
2,274,719 - OKGIIK_10600 0.60 -0.5
2,274,719 - OKGIIK_10600 0.60 +0.6
2,274,719 - OKGIIK_10600 0.60 -1.8
2,274,719 - OKGIIK_10600 0.60 -2.1
2,274,719 - OKGIIK_10600 0.60 -1.8
2,274,719 - OKGIIK_10600 0.60 -1.6
2,274,719 - OKGIIK_10600 0.60 -0.1
2,274,719 - OKGIIK_10600 0.60 +0.9
2,274,719 - OKGIIK_10600 0.60 -1.1
2,274,719 - OKGIIK_10600 0.60 -0.1
2,274,719 - OKGIIK_10600 0.60 -0.1
2,274,719 - OKGIIK_10600 0.60 +0.7
2,274,773 - OKGIIK_10600 0.63 -0.1
2,274,773 - OKGIIK_10600 0.63 -1.1
2,275,163 - OKGIIK_10600 0.85 -2.7
2,275,163 - OKGIIK_10600 0.85 -1.3
2,275,163 - OKGIIK_10600 0.85 -2.1
2,275,163 - OKGIIK_10600 0.85 +0.1
2,275,163 - OKGIIK_10600 0.85 -0.6
2,275,163 - OKGIIK_10600 0.85 -0.3
2,275,166 - OKGIIK_10600 0.85 -0.6
2,275,166 - OKGIIK_10600 0.85 -1.6
2,275,166 - OKGIIK_10600 0.85 -1.6
2,275,166 - OKGIIK_10600 0.85 -1.1
2,275,166 - OKGIIK_10600 0.85 -0.9
2,275,166 - OKGIIK_10600 0.85 -1.3
2,275,166 - OKGIIK_10600 0.85 -0.6
2,275,166 - OKGIIK_10600 0.85 -1.6
2,275,166 - OKGIIK_10600 0.85 -0.8
2,275,365 - +1.2
2,275,365 - -0.1
2,275,365 - -0.8
2,275,409 + +1.8
2,275,410 - +0.6
2,275,410 - -0.1
2,275,471 + +0.2
2,275,471 + -1.6
2,275,471 + -2.2
2,275,471 + +0.7
2,275,471 + -0.4
2,275,471 + -0.1
2,275,471 + -0.1
2,275,471 + -2.2
2,275,471 + -0.4
2,275,471 + -0.9
2,275,471 + +1.0
2,275,472 - -1.6
2,275,476 + -0.2
2,275,476 + -0.3
2,275,476 + +0.2
2,275,476 + -1.3
2,275,476 + -1.1
2,275,476 + -1.1

Or see this region's nucleotide sequence