Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01450

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01440 and OKGIIK_01445 are separated by 97 nucleotidesOKGIIK_01445 and OKGIIK_01450 are separated by 337 nucleotidesOKGIIK_01450 and OKGIIK_01455 overlap by 4 nucleotidesOKGIIK_01455 and argE are separated by 152 nucleotides OKGIIK_01440: OKGIIK_01440 - hypothetical protein, at 322,205 to 322,831 _01440 OKGIIK_01445: OKGIIK_01445 - hypothetical protein, at 322,929 to 323,171 _01445 OKGIIK_01450: OKGIIK_01450 - transcriptional regulator, at 323,509 to 323,859 _01450 OKGIIK_01455: OKGIIK_01455 - DUF6516 domain-containing protein, at 323,856 to 324,221 _01455 OKGIIK_01460: argE - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase or related deacylase, at 324,374 to 325,795 argE Position (kb) 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.514 kb on + strand, within OKGIIK_01440at 322.515 kb on - strand, within OKGIIK_01440at 322.515 kb on - strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.531 kb on + strand, within OKGIIK_01440at 322.648 kb on + strand, within OKGIIK_01440at 322.649 kb on - strand, within OKGIIK_01440at 322.649 kb on - strand, within OKGIIK_01440at 322.668 kb on + strand, within OKGIIK_01440at 322.668 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.674 kb on + strand, within OKGIIK_01440at 322.675 kb on - strand, within OKGIIK_01440at 322.693 kb on + strand, within OKGIIK_01440at 322.779 kb on + strandat 322.791 kb on + strandat 322.792 kb on - strandat 322.792 kb on - strandat 322.808 kb on + strandat 322.809 kb on - strandat 322.832 kb on + strandat 322.833 kb on - strandat 322.849 kb on + strandat 322.850 kb on - strandat 322.850 kb on - strandat 322.866 kb on + strandat 322.866 kb on + strandat 322.866 kb on + strandat 322.867 kb on - strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.930 kb on + strandat 322.931 kb on - strandat 322.931 kb on - strandat 322.931 kb on - strandat 322.931 kb on - strandat 322.991 kb on + strand, within OKGIIK_01445at 322.992 kb on - strand, within OKGIIK_01445at 323.052 kb on + strand, within OKGIIK_01445at 323.053 kb on - strand, within OKGIIK_01445at 323.061 kb on + strand, within OKGIIK_01445at 323.061 kb on + strand, within OKGIIK_01445at 323.107 kb on + strand, within OKGIIK_01445at 323.108 kb on - strand, within OKGIIK_01445at 323.153 kb on + strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.254 kb on - strandat 323.466 kb on + strandat 323.466 kb on + strandat 323.466 kb on + strandat 323.466 kb on + strandat 323.496 kb on + strandat 323.496 kb on + strandat 323.496 kb on + strandat 323.496 kb on + strandat 323.496 kb on + strandat 323.497 kb on - strandat 323.497 kb on - strandat 323.497 kb on - strandat 323.560 kb on - strand, within OKGIIK_01450at 323.560 kb on - strand, within OKGIIK_01450at 323.591 kb on + strand, within OKGIIK_01450at 323.592 kb on - strand, within OKGIIK_01450at 323.625 kb on + strand, within OKGIIK_01450at 323.625 kb on + strand, within OKGIIK_01450at 323.626 kb on - strand, within OKGIIK_01450at 323.626 kb on - strand, within OKGIIK_01450at 323.877 kb on + strandat 323.877 kb on + strandat 323.878 kb on - strandat 323.977 kb on + strand, within OKGIIK_01455at 323.977 kb on + strand, within OKGIIK_01455at 323.978 kb on - strand, within OKGIIK_01455at 323.978 kb on - strand, within OKGIIK_01455at 323.978 kb on - strand, within OKGIIK_01455at 323.978 kb on - strand, within OKGIIK_01455at 323.998 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.090 kb on + strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.091 kb on - strand, within OKGIIK_01455at 324.122 kb on + strand, within OKGIIK_01455at 324.123 kb on - strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.166 kb on + strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.167 kb on - strand, within OKGIIK_01455at 324.225 kb on + strandat 324.225 kb on - strandat 324.226 kb on - strandat 324.226 kb on - strandat 324.227 kb on + strandat 324.227 kb on + strandat 324.227 kb on + strandat 324.228 kb on - strandat 324.228 kb on - strandat 324.228 kb on - strandat 324.229 kb on + strandat 324.229 kb on + strandat 324.230 kb on - strandat 324.230 kb on - strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.370 kb on + strandat 324.371 kb on - strandat 324.371 kb on - strandat 324.371 kb on - strandat 324.371 kb on - strandat 324.469 kb on + strandat 324.469 kb on + strandat 324.469 kb on + strandat 324.470 kb on - strandat 324.470 kb on - strandat 324.470 kb on - strandat 324.505 kb on - strandat 324.505 kb on - strandat 324.505 kb on - strandat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.531 kb on + strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.532 kb on - strand, within argEat 324.739 kb on + strand, within argEat 324.739 kb on + strand, within argEat 324.740 kb on - strand, within argEat 324.852 kb on + strand, within argEat 324.852 kb on + strand, within argEat 324.853 kb on - strand, within argEat 324.853 kb on - strand, within argEat 324.853 kb on - strand, within argE

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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322,514 + OKGIIK_01440 0.49 +0.7
322,515 - OKGIIK_01440 0.49 -0.3
322,515 - OKGIIK_01440 0.49 -1.3
322,531 + OKGIIK_01440 0.52 +0.4
322,531 + OKGIIK_01440 0.52 -2.2
322,531 + OKGIIK_01440 0.52 -3.0
322,648 + OKGIIK_01440 0.71 -0.9
322,649 - OKGIIK_01440 0.71 -0.3
322,649 - OKGIIK_01440 0.71 -0.3
322,668 + OKGIIK_01440 0.74 +0.2
322,668 + OKGIIK_01440 0.74 -2.0
322,674 + OKGIIK_01440 0.75 +0.8
322,674 + OKGIIK_01440 0.75 +1.2
322,674 + OKGIIK_01440 0.75 -1.1
322,675 - OKGIIK_01440 0.75 -0.5
322,693 + OKGIIK_01440 0.78 +1.2
322,779 + +0.0
322,791 + -1.8
322,792 - +0.5
322,792 - -1.1
322,808 + -0.4
322,809 - -0.6
322,832 + +0.7
322,833 - +0.2
322,849 + -1.0
322,850 - -1.1
322,850 - -0.8
322,866 + -0.4
322,866 + -1.1
322,866 + -0.3
322,867 - -2.2
322,930 + +2.2
322,930 + -0.0
322,930 + +0.0
322,930 + +1.0
322,930 + -0.2
322,930 + +0.1
322,931 - +0.4
322,931 - -1.1
322,931 - -0.6
322,931 - +1.2
322,991 + OKGIIK_01445 0.26 +0.2
322,992 - OKGIIK_01445 0.26 -0.1
323,052 + OKGIIK_01445 0.51 +1.2
323,053 - OKGIIK_01445 0.51 -0.8
323,061 + OKGIIK_01445 0.54 +0.1
323,061 + OKGIIK_01445 0.54 +0.7
323,107 + OKGIIK_01445 0.73 -1.1
323,108 - OKGIIK_01445 0.74 +0.8
323,153 + +1.2
323,254 - -1.1
323,254 - +0.5
323,254 - -0.3
323,254 - -0.0
323,254 - -0.4
323,254 - +0.1
323,254 - +0.2
323,254 - -3.6
323,254 - +0.8
323,254 - +0.9
323,254 - -0.8
323,254 - +1.4
323,254 - +0.1
323,254 - -1.9
323,254 - -1.1
323,254 - -0.4
323,466 + +0.4
323,466 + -2.6
323,466 + -1.0
323,466 + -1.3
323,496 + -1.3
323,496 + -1.1
323,496 + -0.3
323,496 + -0.8
323,496 + -0.4
323,497 - -0.2
323,497 - +0.2
323,497 - +0.8
323,560 - OKGIIK_01450 0.15 +0.2
323,560 - OKGIIK_01450 0.15 -1.6
323,591 + OKGIIK_01450 0.23 -1.1
323,592 - OKGIIK_01450 0.24 -0.3
323,625 + OKGIIK_01450 0.33 -2.1
323,625 + OKGIIK_01450 0.33 +0.7
323,626 - OKGIIK_01450 0.33 -0.6
323,626 - OKGIIK_01450 0.33 -1.9
323,877 + +0.3
323,877 + -0.0
323,878 - -0.5
323,977 + OKGIIK_01455 0.33 +0.2
323,977 + OKGIIK_01455 0.33 +1.2
323,978 - OKGIIK_01455 0.33 +0.0
323,978 - OKGIIK_01455 0.33 -1.9
323,978 - OKGIIK_01455 0.33 -0.8
323,978 - OKGIIK_01455 0.33 -1.9
323,998 + OKGIIK_01455 0.39 -1.3
324,090 + OKGIIK_01455 0.64 -0.2
324,090 + OKGIIK_01455 0.64 -0.3
324,090 + OKGIIK_01455 0.64 -1.9
324,090 + OKGIIK_01455 0.64 -2.5
324,090 + OKGIIK_01455 0.64 +0.2
324,090 + OKGIIK_01455 0.64 -1.3
324,091 - OKGIIK_01455 0.64 -0.3
324,091 - OKGIIK_01455 0.64 +0.2
324,091 - OKGIIK_01455 0.64 -0.8
324,091 - OKGIIK_01455 0.64 +0.8
324,091 - OKGIIK_01455 0.64 +0.0
324,091 - OKGIIK_01455 0.64 +1.2
324,091 - OKGIIK_01455 0.64 -2.1
324,091 - OKGIIK_01455 0.64 +0.1
324,091 - OKGIIK_01455 0.64 +1.2
324,122 + OKGIIK_01455 0.73 -2.5
324,123 - OKGIIK_01455 0.73 -0.8
324,166 + OKGIIK_01455 0.85 +0.1
324,166 + OKGIIK_01455 0.85 -1.6
324,166 + OKGIIK_01455 0.85 -0.0
324,166 + OKGIIK_01455 0.85 -0.2
324,166 + OKGIIK_01455 0.85 +1.2
324,166 + OKGIIK_01455 0.85 +0.8
324,166 + OKGIIK_01455 0.85 -0.2
324,166 + OKGIIK_01455 0.85 -0.1
324,166 + OKGIIK_01455 0.85 -0.4
324,166 + OKGIIK_01455 0.85 +0.2
324,166 + OKGIIK_01455 0.85 -0.2
324,167 - OKGIIK_01455 0.85 +0.5
324,167 - OKGIIK_01455 0.85 -0.2
324,167 - OKGIIK_01455 0.85 +0.4
324,167 - OKGIIK_01455 0.85 +0.2
324,167 - OKGIIK_01455 0.85 -1.6
324,167 - OKGIIK_01455 0.85 +0.5
324,167 - OKGIIK_01455 0.85 -0.6
324,167 - OKGIIK_01455 0.85 -0.2
324,167 - OKGIIK_01455 0.85 -1.1
324,167 - OKGIIK_01455 0.85 -0.8
324,167 - OKGIIK_01455 0.85 -0.3
324,167 - OKGIIK_01455 0.85 -0.1
324,167 - OKGIIK_01455 0.85 -1.3
324,167 - OKGIIK_01455 0.85 -0.8
324,167 - OKGIIK_01455 0.85 -0.8
324,225 + -0.8
324,225 - -2.3
324,226 - +1.0
324,226 - -1.8
324,227 + -0.3
324,227 + -1.6
324,227 + -0.1
324,228 - -1.1
324,228 - -0.5
324,228 - +0.1
324,229 + +0.2
324,229 + +0.4
324,230 - -1.1
324,230 - +0.5
324,370 + +0.1
324,370 + -0.8
324,370 + +0.2
324,370 + +0.4
324,370 + -1.6
324,370 + +0.5
324,370 + -1.3
324,371 - -1.3
324,371 - -0.1
324,371 - -2.1
324,371 - +1.2
324,469 + -1.1
324,469 + -0.3
324,469 + -0.3
324,470 - +0.7
324,470 - -0.2
324,470 - +0.5
324,505 - -0.1
324,505 - +0.4
324,505 - -2.1
324,531 + argE OKGIIK_01460 0.11 +1.6
324,531 + argE OKGIIK_01460 0.11 +0.8
324,531 + argE OKGIIK_01460 0.11 -0.6
324,531 + argE OKGIIK_01460 0.11 -0.1
324,531 + argE OKGIIK_01460 0.11 -1.3
324,531 + argE OKGIIK_01460 0.11 -0.2
324,531 + argE OKGIIK_01460 0.11 -2.3
324,531 + argE OKGIIK_01460 0.11 -0.1
324,531 + argE OKGIIK_01460 0.11 +0.7
324,531 + argE OKGIIK_01460 0.11 -1.7
324,531 + argE OKGIIK_01460 0.11 -1.1
324,531 + argE OKGIIK_01460 0.11 -0.3
324,531 + argE OKGIIK_01460 0.11 -1.3
324,531 + argE OKGIIK_01460 0.11 -1.3
324,531 + argE OKGIIK_01460 0.11 +0.2
324,531 + argE OKGIIK_01460 0.11 -1.6
324,531 + argE OKGIIK_01460 0.11 +0.6
324,531 + argE OKGIIK_01460 0.11 -1.1
324,531 + argE OKGIIK_01460 0.11 -0.7
324,532 - argE OKGIIK_01460 0.11 -1.0
324,532 - argE OKGIIK_01460 0.11 -0.8
324,532 - argE OKGIIK_01460 0.11 -2.2
324,532 - argE OKGIIK_01460 0.11 -0.0
324,532 - argE OKGIIK_01460 0.11 +0.2
324,532 - argE OKGIIK_01460 0.11 +0.0
324,532 - argE OKGIIK_01460 0.11 -0.0
324,532 - argE OKGIIK_01460 0.11 -0.3
324,532 - argE OKGIIK_01460 0.11 -0.8
324,532 - argE OKGIIK_01460 0.11 +1.2
324,532 - argE OKGIIK_01460 0.11 +1.7
324,532 - argE OKGIIK_01460 0.11 +1.2
324,532 - argE OKGIIK_01460 0.11 +0.4
324,532 - argE OKGIIK_01460 0.11 -0.9
324,532 - argE OKGIIK_01460 0.11 -0.1
324,532 - argE OKGIIK_01460 0.11 +1.1
324,532 - argE OKGIIK_01460 0.11 +0.7
324,532 - argE OKGIIK_01460 0.11 -0.8
324,739 + argE OKGIIK_01460 0.26 -0.2
324,739 + argE OKGIIK_01460 0.26 +0.0
324,740 - argE OKGIIK_01460 0.26 -1.3
324,852 + argE OKGIIK_01460 0.34 +0.1
324,852 + argE OKGIIK_01460 0.34 +0.7
324,853 - argE OKGIIK_01460 0.34 +0.2
324,853 - argE OKGIIK_01460 0.34 -1.1
324,853 - argE OKGIIK_01460 0.34 -1.6

Or see this region's nucleotide sequence