Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00465

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00455 and OKGIIK_00460 are separated by 31 nucleotidesOKGIIK_00460 and OKGIIK_00465 are separated by 169 nucleotidesOKGIIK_00465 and OKGIIK_00470 are separated by 362 nucleotidesOKGIIK_00470 and yqfA are separated by 91 nucleotides OKGIIK_00455: OKGIIK_00455 - Pyridine nucleotide-disulfide oxidoreductase, at 104,171 to 105,538 _00455 OKGIIK_00460: OKGIIK_00460 - Cysteine dioxygenase, at 105,570 to 106,148 _00460 OKGIIK_00465: OKGIIK_00465 - Energy transducer TonB, at 106,318 to 106,986 _00465 OKGIIK_00470: OKGIIK_00470 - Alanyl-tRNA synthetase, at 107,349 to 107,783 _00470 OKGIIK_00475: yqfA - putative membrane channel-forming protein YqfA, hemolysin III family, at 107,875 to 108,540 yqfA Position (kb) 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 105.399 kb on + strand, within OKGIIK_00455at 105.399 kb on + strand, within OKGIIK_00455at 105.399 kb on + strand, within OKGIIK_00455at 105.400 kb on - strand, within OKGIIK_00455at 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.534 kb on + strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.535 kb on - strandat 105.649 kb on + strand, within OKGIIK_00460at 105.649 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.658 kb on + strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.659 kb on - strand, within OKGIIK_00460at 105.679 kb on + strand, within OKGIIK_00460at 105.679 kb on + strand, within OKGIIK_00460at 105.679 kb on + strand, within OKGIIK_00460at 105.680 kb on - strand, within OKGIIK_00460at 105.829 kb on + strand, within OKGIIK_00460at 105.829 kb on + strand, within OKGIIK_00460at 105.829 kb on + strand, within OKGIIK_00460at 105.829 kb on + strand, within OKGIIK_00460at 105.829 kb on + strand, within OKGIIK_00460at 105.830 kb on - strand, within OKGIIK_00460at 105.830 kb on - strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.852 kb on + strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 105.853 kb on - strand, within OKGIIK_00460at 106.192 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.192 kb on + strandat 106.193 kb on - strandat 106.193 kb on - strandat 106.193 kb on - strandat 106.193 kb on - strandat 106.193 kb on - strandat 106.198 kb on + strandat 106.208 kb on + strandat 106.208 kb on + strandat 106.208 kb on + strandat 106.208 kb on + strandat 106.209 kb on - strandat 106.209 kb on - strandat 106.209 kb on - strandat 106.209 kb on - strandat 106.209 kb on - strandat 106.287 kb on + strandat 106.575 kb on - strand, within OKGIIK_00465at 106.584 kb on + strand, within OKGIIK_00465at 106.585 kb on - strand, within OKGIIK_00465at 106.963 kb on + strandat 106.963 kb on + strandat 106.964 kb on - strandat 106.964 kb on - strandat 106.964 kb on - strandat 106.964 kb on - strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.068 kb on + strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.069 kb on - strandat 107.095 kb on + strandat 107.095 kb on + strandat 107.095 kb on + strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.096 kb on - strandat 107.113 kb on + strandat 107.113 kb on + strandat 107.113 kb on + strandat 107.113 kb on + strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.114 kb on - strandat 107.214 kb on + strandat 107.214 kb on + strandat 107.214 kb on + strandat 107.215 kb on - strandat 107.215 kb on - strandat 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.475 kb on + strand, within OKGIIK_00470at 107.476 kb on - strand, within OKGIIK_00470at 107.476 kb on - strand, within OKGIIK_00470at 107.640 kb on + strand, within OKGIIK_00470at 107.641 kb on - strand, within OKGIIK_00470at 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.817 kb on + strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.818 kb on - strandat 107.840 kb on + strandat 107.845 kb on + strandat 107.845 kb on + strandat 107.845 kb on + strandat 107.846 kb on - strandat 107.908 kb on + strandat 107.909 kb on - strandat 107.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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105,399 + OKGIIK_00455 0.90 -1.1
105,399 + OKGIIK_00455 0.90 +0.0
105,399 + OKGIIK_00455 0.90 -1.1
105,400 - OKGIIK_00455 0.90 +0.5
105,534 + +0.2
105,534 + +0.9
105,534 + -0.4
105,534 + -1.0
105,534 + -1.1
105,534 + -1.9
105,534 + -0.1
105,534 + -1.5
105,534 + +0.3
105,534 + -1.8
105,534 + -2.4
105,534 + -1.4
105,534 + -2.1
105,534 + -0.1
105,534 + +1.4
105,534 + +0.2
105,534 + -0.8
105,534 + +0.8
105,534 + -0.3
105,534 + -0.8
105,534 + +0.9
105,534 + -1.6
105,535 - -2.4
105,535 - -0.3
105,535 - -2.6
105,535 - -1.6
105,535 - -1.1
105,535 - -0.1
105,535 - +0.3
105,535 - -0.4
105,535 - +0.0
105,535 - -0.4
105,535 - -0.4
105,535 - +1.2
105,535 - -2.2
105,535 - -1.0
105,649 + OKGIIK_00460 0.14 -1.6
105,649 + OKGIIK_00460 0.14 -1.1
105,658 + OKGIIK_00460 0.15 -2.1
105,658 + OKGIIK_00460 0.15 -0.4
105,658 + OKGIIK_00460 0.15 -2.9
105,658 + OKGIIK_00460 0.15 -1.6
105,658 + OKGIIK_00460 0.15 -0.5
105,658 + OKGIIK_00460 0.15 +0.1
105,658 + OKGIIK_00460 0.15 -0.0
105,658 + OKGIIK_00460 0.15 -2.0
105,658 + OKGIIK_00460 0.15 -0.0
105,659 - OKGIIK_00460 0.15 +3.0
105,659 - OKGIIK_00460 0.15 +0.7
105,659 - OKGIIK_00460 0.15 -1.1
105,659 - OKGIIK_00460 0.15 -1.0
105,659 - OKGIIK_00460 0.15 +1.8
105,659 - OKGIIK_00460 0.15 +1.2
105,659 - OKGIIK_00460 0.15 +0.2
105,659 - OKGIIK_00460 0.15 -1.8
105,679 + OKGIIK_00460 0.19 -2.0
105,679 + OKGIIK_00460 0.19 +0.2
105,679 + OKGIIK_00460 0.19 -0.4
105,680 - OKGIIK_00460 0.19 -0.4
105,829 + OKGIIK_00460 0.45 -0.2
105,829 + OKGIIK_00460 0.45 +0.2
105,829 + OKGIIK_00460 0.45 +0.2
105,829 + OKGIIK_00460 0.45 -0.9
105,829 + OKGIIK_00460 0.45 +1.2
105,830 - OKGIIK_00460 0.45 +0.4
105,830 - OKGIIK_00460 0.45 -1.1
105,852 + OKGIIK_00460 0.49 -2.0
105,852 + OKGIIK_00460 0.49 +1.5
105,852 + OKGIIK_00460 0.49 -0.6
105,852 + OKGIIK_00460 0.49 -1.0
105,852 + OKGIIK_00460 0.49 -0.8
105,852 + OKGIIK_00460 0.49 +0.8
105,852 + OKGIIK_00460 0.49 -0.8
105,852 + OKGIIK_00460 0.49 -1.2
105,852 + OKGIIK_00460 0.49 -1.6
105,852 + OKGIIK_00460 0.49 +2.2
105,852 + OKGIIK_00460 0.49 -1.1
105,852 + OKGIIK_00460 0.49 -0.8
105,852 + OKGIIK_00460 0.49 +1.2
105,852 + OKGIIK_00460 0.49 -0.4
105,852 + OKGIIK_00460 0.49 +1.2
105,852 + OKGIIK_00460 0.49 -0.4
105,852 + OKGIIK_00460 0.49 -2.3
105,852 + OKGIIK_00460 0.49 -0.4
105,852 + OKGIIK_00460 0.49 -1.4
105,852 + OKGIIK_00460 0.49 +0.9
105,853 - OKGIIK_00460 0.49 -3.0
105,853 - OKGIIK_00460 0.49 -1.0
105,853 - OKGIIK_00460 0.49 +1.5
105,853 - OKGIIK_00460 0.49 -1.7
105,853 - OKGIIK_00460 0.49 -1.3
105,853 - OKGIIK_00460 0.49 -2.1
105,853 - OKGIIK_00460 0.49 -1.1
105,853 - OKGIIK_00460 0.49 -1.6
105,853 - OKGIIK_00460 0.49 -0.9
105,853 - OKGIIK_00460 0.49 +0.5
106,192 + +0.4
106,192 + -0.4
106,192 + +0.1
106,192 + +0.2
106,192 + +1.2
106,192 + -1.0
106,193 - -0.8
106,193 - -1.1
106,193 - +0.2
106,193 - +0.0
106,193 - +1.2
106,198 + -0.4
106,208 + -0.4
106,208 + +0.3
106,208 + -0.9
106,208 + -0.4
106,209 - -1.6
106,209 - -1.8
106,209 - -0.9
106,209 - -1.0
106,209 - +0.2
106,287 + -1.6
106,575 - OKGIIK_00465 0.38 -1.0
106,584 + OKGIIK_00465 0.40 -1.6
106,585 - OKGIIK_00465 0.40 -0.0
106,963 + +0.1
106,963 + +0.2
106,964 - -0.3
106,964 - +1.0
106,964 - +0.7
106,964 - +0.2
107,068 + -0.2
107,068 + -1.4
107,068 + -0.0
107,068 + -2.3
107,068 + +0.4
107,068 + -0.4
107,068 + -0.8
107,069 - +0.2
107,069 - -1.2
107,069 - -2.9
107,069 - -1.0
107,069 - +0.8
107,069 - +0.6
107,069 - -0.4
107,069 - -0.1
107,069 - +0.2
107,069 - -1.3
107,069 - -0.9
107,069 - +0.1
107,069 - -0.1
107,069 - -2.7
107,069 - -0.1
107,095 + +0.5
107,095 + -1.8
107,095 + +1.2
107,096 - -0.8
107,096 - -1.8
107,096 - +0.2
107,096 - +0.2
107,096 - -1.6
107,096 - -0.6
107,113 + -1.6
107,113 + -1.0
107,113 + -1.6
107,113 + +0.2
107,114 - -1.8
107,114 - +0.8
107,114 - +1.2
107,114 - -0.2
107,214 + +0.0
107,214 + +0.9
107,214 + -0.1
107,215 - -1.8
107,215 - +0.9
107,475 + OKGIIK_00470 0.29 -1.7
107,475 + OKGIIK_00470 0.29 -0.2
107,475 + OKGIIK_00470 0.29 -2.3
107,475 + OKGIIK_00470 0.29 -2.0
107,475 + OKGIIK_00470 0.29 -0.6
107,475 + OKGIIK_00470 0.29 -1.9
107,475 + OKGIIK_00470 0.29 -0.9
107,476 - OKGIIK_00470 0.29 +0.5
107,476 - OKGIIK_00470 0.29 -1.0
107,640 + OKGIIK_00470 0.67 +2.2
107,641 - OKGIIK_00470 0.67 -3.4
107,817 + -0.3
107,817 + -2.0
107,817 + +1.2
107,817 + -0.1
107,817 + +0.2
107,817 + +0.4
107,817 + +0.2
107,817 + +0.2
107,817 + -1.1
107,817 + -1.4
107,817 + +0.2
107,817 + -0.7
107,818 - +0.2
107,818 - -1.0
107,818 - +1.4
107,818 - -0.4
107,818 - -0.9
107,818 - -0.6
107,818 - +0.8
107,818 - -1.6
107,818 - -0.6
107,840 + -1.1
107,845 + -1.1
107,845 + -2.8
107,845 + -0.0
107,846 - -1.5
107,908 + +1.2
107,909 - -0.0
107,909 - -1.3

Or see this region's nucleotide sequence