Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_00455 and OKGIIK_00460 are separated by 31 nucleotides OKGIIK_00460 and OKGIIK_00465 are separated by 169 nucleotides OKGIIK_00465 and OKGIIK_00470 are separated by 362 nucleotides OKGIIK_00470 and yqfA are separated by 91 nucleotides
OKGIIK_00455: OKGIIK_00455 - Pyridine nucleotide-disulfide oxidoreductase, at 104,171 to 105,538
_00455
OKGIIK_00460: OKGIIK_00460 - Cysteine dioxygenase, at 105,570 to 106,148
_00460
OKGIIK_00465: OKGIIK_00465 - Energy transducer TonB, at 106,318 to 106,986
_00465
OKGIIK_00470: OKGIIK_00470 - Alanyl-tRNA synthetase, at 107,349 to 107,783
_00470
OKGIIK_00475: yqfA - putative membrane channel-forming protein YqfA, hemolysin III family, at 107,875 to 108,540
yqfA
Position (kb)
106
107 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 105.399 kb on + strand, within OKGIIK_00455 at 105.399 kb on + strand, within OKGIIK_00455 at 105.399 kb on + strand, within OKGIIK_00455 at 105.400 kb on - strand, within OKGIIK_00455 at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.534 kb on + strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.535 kb on - strand at 105.649 kb on + strand, within OKGIIK_00460 at 105.649 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.658 kb on + strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.659 kb on - strand, within OKGIIK_00460 at 105.679 kb on + strand, within OKGIIK_00460 at 105.679 kb on + strand, within OKGIIK_00460 at 105.679 kb on + strand, within OKGIIK_00460 at 105.680 kb on - strand, within OKGIIK_00460 at 105.829 kb on + strand, within OKGIIK_00460 at 105.829 kb on + strand, within OKGIIK_00460 at 105.829 kb on + strand, within OKGIIK_00460 at 105.829 kb on + strand, within OKGIIK_00460 at 105.829 kb on + strand, within OKGIIK_00460 at 105.830 kb on - strand, within OKGIIK_00460 at 105.830 kb on - strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.852 kb on + strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 105.853 kb on - strand, within OKGIIK_00460 at 106.192 kb on + strand at 106.192 kb on + strand at 106.192 kb on + strand at 106.192 kb on + strand at 106.192 kb on + strand at 106.192 kb on + strand at 106.193 kb on - strand at 106.193 kb on - strand at 106.193 kb on - strand at 106.193 kb on - strand at 106.193 kb on - strand at 106.198 kb on + strand at 106.208 kb on + strand at 106.208 kb on + strand at 106.208 kb on + strand at 106.208 kb on + strand at 106.209 kb on - strand at 106.209 kb on - strand at 106.209 kb on - strand at 106.209 kb on - strand at 106.209 kb on - strand at 106.287 kb on + strand at 106.575 kb on - strand, within OKGIIK_00465 at 106.584 kb on + strand, within OKGIIK_00465 at 106.585 kb on - strand, within OKGIIK_00465 at 106.963 kb on + strand at 106.963 kb on + strand at 106.964 kb on - strand at 106.964 kb on - strand at 106.964 kb on - strand at 106.964 kb on - strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.068 kb on + strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.069 kb on - strand at 107.095 kb on + strand at 107.095 kb on + strand at 107.095 kb on + strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.096 kb on - strand at 107.113 kb on + strand at 107.113 kb on + strand at 107.113 kb on + strand at 107.113 kb on + strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.114 kb on - strand at 107.214 kb on + strand at 107.214 kb on + strand at 107.214 kb on + strand at 107.215 kb on - strand at 107.215 kb on - strand at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.475 kb on + strand, within OKGIIK_00470 at 107.476 kb on - strand, within OKGIIK_00470 at 107.476 kb on - strand, within OKGIIK_00470 at 107.640 kb on + strand, within OKGIIK_00470 at 107.641 kb on - strand, within OKGIIK_00470 at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.817 kb on + strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.818 kb on - strand at 107.840 kb on + strand at 107.845 kb on + strand at 107.845 kb on + strand at 107.845 kb on + strand at 107.846 kb on - strand at 107.908 kb on + strand at 107.909 kb on - strand at 107.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 105,399 + OKGIIK_00455 0.90 -1.1 105,399 + OKGIIK_00455 0.90 +0.0 105,399 + OKGIIK_00455 0.90 -1.1 105,400 - OKGIIK_00455 0.90 +0.5 105,534 + +0.2 105,534 + +0.9 105,534 + -0.4 105,534 + -1.0 105,534 + -1.1 105,534 + -1.9 105,534 + -0.1 105,534 + -1.5 105,534 + +0.3 105,534 + -1.8 105,534 + -2.4 105,534 + -1.4 105,534 + -2.1 105,534 + -0.1 105,534 + +1.4 105,534 + +0.2 105,534 + -0.8 105,534 + +0.8 105,534 + -0.3 105,534 + -0.8 105,534 + +0.9 105,534 + -1.6 105,535 - -2.4 105,535 - -0.3 105,535 - -2.6 105,535 - -1.6 105,535 - -1.1 105,535 - -0.1 105,535 - +0.3 105,535 - -0.4 105,535 - +0.0 105,535 - -0.4 105,535 - -0.4 105,535 - +1.2 105,535 - -2.2 105,535 - -1.0 105,649 + OKGIIK_00460 0.14 -1.6 105,649 + OKGIIK_00460 0.14 -1.1 105,658 + OKGIIK_00460 0.15 -2.1 105,658 + OKGIIK_00460 0.15 -0.4 105,658 + OKGIIK_00460 0.15 -2.9 105,658 + OKGIIK_00460 0.15 -1.6 105,658 + OKGIIK_00460 0.15 -0.5 105,658 + OKGIIK_00460 0.15 +0.1 105,658 + OKGIIK_00460 0.15 -0.0 105,658 + OKGIIK_00460 0.15 -2.0 105,658 + OKGIIK_00460 0.15 -0.0 105,659 - OKGIIK_00460 0.15 +3.0 105,659 - OKGIIK_00460 0.15 +0.7 105,659 - OKGIIK_00460 0.15 -1.1 105,659 - OKGIIK_00460 0.15 -1.0 105,659 - OKGIIK_00460 0.15 +1.8 105,659 - OKGIIK_00460 0.15 +1.2 105,659 - OKGIIK_00460 0.15 +0.2 105,659 - OKGIIK_00460 0.15 -1.8 105,679 + OKGIIK_00460 0.19 -2.0 105,679 + OKGIIK_00460 0.19 +0.2 105,679 + OKGIIK_00460 0.19 -0.4 105,680 - OKGIIK_00460 0.19 -0.4 105,829 + OKGIIK_00460 0.45 -0.2 105,829 + OKGIIK_00460 0.45 +0.2 105,829 + OKGIIK_00460 0.45 +0.2 105,829 + OKGIIK_00460 0.45 -0.9 105,829 + OKGIIK_00460 0.45 +1.2 105,830 - OKGIIK_00460 0.45 +0.4 105,830 - OKGIIK_00460 0.45 -1.1 105,852 + OKGIIK_00460 0.49 -2.0 105,852 + OKGIIK_00460 0.49 +1.5 105,852 + OKGIIK_00460 0.49 -0.6 105,852 + OKGIIK_00460 0.49 -1.0 105,852 + OKGIIK_00460 0.49 -0.8 105,852 + OKGIIK_00460 0.49 +0.8 105,852 + OKGIIK_00460 0.49 -0.8 105,852 + OKGIIK_00460 0.49 -1.2 105,852 + OKGIIK_00460 0.49 -1.6 105,852 + OKGIIK_00460 0.49 +2.2 105,852 + OKGIIK_00460 0.49 -1.1 105,852 + OKGIIK_00460 0.49 -0.8 105,852 + OKGIIK_00460 0.49 +1.2 105,852 + OKGIIK_00460 0.49 -0.4 105,852 + OKGIIK_00460 0.49 +1.2 105,852 + OKGIIK_00460 0.49 -0.4 105,852 + OKGIIK_00460 0.49 -2.3 105,852 + OKGIIK_00460 0.49 -0.4 105,852 + OKGIIK_00460 0.49 -1.4 105,852 + OKGIIK_00460 0.49 +0.9 105,853 - OKGIIK_00460 0.49 -3.0 105,853 - OKGIIK_00460 0.49 -1.0 105,853 - OKGIIK_00460 0.49 +1.5 105,853 - OKGIIK_00460 0.49 -1.7 105,853 - OKGIIK_00460 0.49 -1.3 105,853 - OKGIIK_00460 0.49 -2.1 105,853 - OKGIIK_00460 0.49 -1.1 105,853 - OKGIIK_00460 0.49 -1.6 105,853 - OKGIIK_00460 0.49 -0.9 105,853 - OKGIIK_00460 0.49 +0.5 106,192 + +0.4 106,192 + -0.4 106,192 + +0.1 106,192 + +0.2 106,192 + +1.2 106,192 + -1.0 106,193 - -0.8 106,193 - -1.1 106,193 - +0.2 106,193 - +0.0 106,193 - +1.2 106,198 + -0.4 106,208 + -0.4 106,208 + +0.3 106,208 + -0.9 106,208 + -0.4 106,209 - -1.6 106,209 - -1.8 106,209 - -0.9 106,209 - -1.0 106,209 - +0.2 106,287 + -1.6 106,575 - OKGIIK_00465 0.38 -1.0 106,584 + OKGIIK_00465 0.40 -1.6 106,585 - OKGIIK_00465 0.40 -0.0 106,963 + +0.1 106,963 + +0.2 106,964 - -0.3 106,964 - +1.0 106,964 - +0.7 106,964 - +0.2 107,068 + -0.2 107,068 + -1.4 107,068 + -0.0 107,068 + -2.3 107,068 + +0.4 107,068 + -0.4 107,068 + -0.8 107,069 - +0.2 107,069 - -1.2 107,069 - -2.9 107,069 - -1.0 107,069 - +0.8 107,069 - +0.6 107,069 - -0.4 107,069 - -0.1 107,069 - +0.2 107,069 - -1.3 107,069 - -0.9 107,069 - +0.1 107,069 - -0.1 107,069 - -2.7 107,069 - -0.1 107,095 + +0.5 107,095 + -1.8 107,095 + +1.2 107,096 - -0.8 107,096 - -1.8 107,096 - +0.2 107,096 - +0.2 107,096 - -1.6 107,096 - -0.6 107,113 + -1.6 107,113 + -1.0 107,113 + -1.6 107,113 + +0.2 107,114 - -1.8 107,114 - +0.8 107,114 - +1.2 107,114 - -0.2 107,214 + +0.0 107,214 + +0.9 107,214 + -0.1 107,215 - -1.8 107,215 - +0.9 107,475 + OKGIIK_00470 0.29 -1.7 107,475 + OKGIIK_00470 0.29 -0.2 107,475 + OKGIIK_00470 0.29 -2.3 107,475 + OKGIIK_00470 0.29 -2.0 107,475 + OKGIIK_00470 0.29 -0.6 107,475 + OKGIIK_00470 0.29 -1.9 107,475 + OKGIIK_00470 0.29 -0.9 107,476 - OKGIIK_00470 0.29 +0.5 107,476 - OKGIIK_00470 0.29 -1.0 107,640 + OKGIIK_00470 0.67 +2.2 107,641 - OKGIIK_00470 0.67 -3.4 107,817 + -0.3 107,817 + -2.0 107,817 + +1.2 107,817 + -0.1 107,817 + +0.2 107,817 + +0.4 107,817 + +0.2 107,817 + +0.2 107,817 + -1.1 107,817 + -1.4 107,817 + +0.2 107,817 + -0.7 107,818 - +0.2 107,818 - -1.0 107,818 - +1.4 107,818 - -0.4 107,818 - -0.9 107,818 - -0.6 107,818 - +0.8 107,818 - -1.6 107,818 - -0.6 107,840 + -1.1 107,845 + -1.1 107,845 + -2.8 107,845 + -0.0 107,846 - -1.5 107,908 + +1.2 107,909 - -0.0 107,909 - -1.3
Or see this region's nucleotide sequence