Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt elfD and NOLOHH_21885 are separated by 82 nucleotides NOLOHH_21885 and ssuE are separated by 355 nucleotides ssuE and ssuA overlap by 8 nucleotides ssuA and ssuD overlap by 4 nucleotides
NOLOHH_21880: elfD - putative fimbrial chaperone protein ElfD, at 4,303,615 to 4,304,316
elfD
NOLOHH_21885: NOLOHH_21885 - fimbrial protein, at 4,304,399 to 4,304,941
_21885
NOLOHH_21890: ssuE - NADPH-dependent FMN reductase, at 4,305,297 to 4,305,872
ssuE
NOLOHH_21895: ssuA - aliphatic sulfonate ABC transporter substrate-binding protein SsuA, at 4,305,865 to 4,306,824
ssuA
NOLOHH_21900: ssuD - FMNH2-dependent alkanesulfonate monooxygenase, at 4,306,821 to 4,307,966
ssuD
Position (kb) 4305
4306 Strain fitness (log2 ratio) -1
0
1
2
3 at 4304.675 kb on - strand, within NOLOHH_21885 at 4305.296 kb on + strand at 4305.360 kb on + strand, within ssuE at 4305.360 kb on + strand, within ssuE at 4305.538 kb on - strand, within ssuE at 4305.954 kb on + strand at 4305.956 kb on + strand at 4305.956 kb on + strand at 4305.957 kb on - strand at 4305.986 kb on + strand, within ssuA at 4306.095 kb on + strand, within ssuA at 4306.160 kb on + strand, within ssuA at 4306.161 kb on - strand, within ssuA at 4306.324 kb on - strand, within ssuA at 4306.348 kb on + strand, within ssuA at 4306.390 kb on - strand, within ssuA at 4306.408 kb on - strand, within ssuA at 4306.423 kb on + strand, within ssuA at 4306.424 kb on - strand, within ssuA at 4306.436 kb on + strand, within ssuA at 4306.437 kb on - strand, within ssuA at 4306.439 kb on + strand, within ssuA at 4306.658 kb on - strand, within ssuA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,304,675 - NOLOHH_21885 0.51 -0.1 4,305,296 + +0.1 4,305,360 + ssuE NOLOHH_21890 0.11 -0.7 4,305,360 + ssuE NOLOHH_21890 0.11 -0.7 4,305,538 - ssuE NOLOHH_21890 0.42 +0.9 4,305,954 + +2.0 4,305,956 + -0.1 4,305,956 + -0.7 4,305,957 - -0.7 4,305,986 + ssuA NOLOHH_21895 0.13 +0.4 4,306,095 + ssuA NOLOHH_21895 0.24 -0.1 4,306,160 + ssuA NOLOHH_21895 0.31 -1.1 4,306,161 - ssuA NOLOHH_21895 0.31 -0.1 4,306,324 - ssuA NOLOHH_21895 0.48 +3.0 4,306,348 + ssuA NOLOHH_21895 0.50 +2.4 4,306,390 - ssuA NOLOHH_21895 0.55 +1.2 4,306,408 - ssuA NOLOHH_21895 0.57 +0.9 4,306,423 + ssuA NOLOHH_21895 0.58 +0.9 4,306,424 - ssuA NOLOHH_21895 0.58 +3.7 4,306,436 + ssuA NOLOHH_21895 0.59 -0.5 4,306,437 - ssuA NOLOHH_21895 0.60 +1.9 4,306,439 + ssuA NOLOHH_21895 0.60 +0.9 4,306,658 - ssuA NOLOHH_21895 0.83 +1.9
Or see this region's nucleotide sequence