Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17725

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotidesuhpC and ydiM are separated by 226 nucleotides NOLOHH_17715: aroD - 3-dehydroquinate dehydratase, at 3,477,773 to 3,478,531 aroD NOLOHH_17720: ydiB - quinate/shikimate dehydrogenase, at 3,478,562 to 3,479,428 ydiB NOLOHH_17725: uhpC - MFS transporter, at 3,479,440 to 3,480,705 uhpC NOLOHH_17730: ydiM - Inner membrane transport protein YdiM, at 3,480,932 to 3,482,146 ydiM Position (kb) 3479 3480 3481Strain fitness (log2 ratio) -2 -1 0 1at 3478.729 kb on - strand, within ydiBat 3478.729 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.314 kb on - strand, within ydiBat 3479.318 kb on - strand, within ydiBat 3479.455 kb on - strandat 3479.455 kb on - strandat 3480.374 kb on - strand, within uhpC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,478,729 - ydiB NOLOHH_17720 0.19 +0.4
3,478,729 - ydiB NOLOHH_17720 0.19 -0.0
3,479,314 - ydiB NOLOHH_17720 0.87 -1.3
3,479,314 - ydiB NOLOHH_17720 0.87 -0.7
3,479,314 - ydiB NOLOHH_17720 0.87 -1.9
3,479,314 - ydiB NOLOHH_17720 0.87 -1.6
3,479,318 - ydiB NOLOHH_17720 0.87 +0.1
3,479,455 - +0.7
3,479,455 - +0.1
3,480,374 - uhpC NOLOHH_17725 0.74 -1.6

Or see this region's nucleotide sequence