Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10240

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_10230 and labA are separated by 177 nucleotideslabA and OKGIIK_10240 overlap by 4 nucleotidesOKGIIK_10240 and xseB are separated by 75 nucleotidesxseB and ispA are separated by 22 nucleotides OKGIIK_10230: OKGIIK_10230 - Bulb-type lectin domain-containing protein, at 2,207,844 to 2,208,956 _10230 OKGIIK_10235: labA - Maebl, at 2,209,134 to 2,209,868 labA OKGIIK_10240: OKGIIK_10240 - tRNA(Ile)-lysidine synthase, at 2,209,865 to 2,211,166 _10240 OKGIIK_10245: xseB - exodeoxyribonuclease VII small subunit, at 2,211,242 to 2,211,499 xseB OKGIIK_10250: ispA - geranyl transferase, at 2,211,522 to 2,212,382 ispA Position (kb) 2209 2210 2211 2212Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2208.885 kb on + strandat 2208.886 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2209.095 kb on + strandat 2209.113 kb on + strandat 2209.113 kb on + strandat 2209.156 kb on + strandat 2209.156 kb on + strandat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.222 kb on - strand, within labAat 2209.222 kb on - strand, within labAat 2209.222 kb on - strand, within labAat 2209.248 kb on + strand, within labAat 2209.248 kb on + strand, within labAat 2209.332 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.485 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.546 kb on - strand, within labAat 2209.546 kb on - strand, within labAat 2209.547 kb on + strand, within labAat 2209.547 kb on + strand, within labAat 2209.548 kb on - strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.758 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2211.651 kb on + strand, within ispA

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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2,208,885 + -1.3
2,208,886 - +0.0
2,208,931 - +0.2
2,208,931 - +1.8
2,208,931 - -1.6
2,208,931 - -0.6
2,208,931 - +1.4
2,209,095 + -0.6
2,209,113 + +1.7
2,209,113 + +2.3
2,209,156 + +0.8
2,209,156 + +0.0
2,209,221 + labA OKGIIK_10235 0.12 +0.1
2,209,221 + labA OKGIIK_10235 0.12 -0.3
2,209,221 + labA OKGIIK_10235 0.12 -1.1
2,209,221 + labA OKGIIK_10235 0.12 -1.6
2,209,221 + labA OKGIIK_10235 0.12 +0.6
2,209,222 - labA OKGIIK_10235 0.12 +1.8
2,209,222 - labA OKGIIK_10235 0.12 +0.4
2,209,222 - labA OKGIIK_10235 0.12 -1.7
2,209,248 + labA OKGIIK_10235 0.16 -0.6
2,209,248 + labA OKGIIK_10235 0.16 -0.6
2,209,332 + labA OKGIIK_10235 0.27 -1.1
2,209,392 + labA OKGIIK_10235 0.35 +0.2
2,209,392 + labA OKGIIK_10235 0.35 -1.7
2,209,392 + labA OKGIIK_10235 0.35 -1.0
2,209,485 + labA OKGIIK_10235 0.48 -0.8
2,209,545 + labA OKGIIK_10235 0.56 -0.3
2,209,545 + labA OKGIIK_10235 0.56 -0.4
2,209,545 + labA OKGIIK_10235 0.56 -0.6
2,209,545 + labA OKGIIK_10235 0.56 -1.1
2,209,545 + labA OKGIIK_10235 0.56 +0.7
2,209,545 + labA OKGIIK_10235 0.56 -1.4
2,209,545 + labA OKGIIK_10235 0.56 -0.1
2,209,545 + labA OKGIIK_10235 0.56 -0.6
2,209,545 + labA OKGIIK_10235 0.56 +0.0
2,209,545 + labA OKGIIK_10235 0.56 -0.3
2,209,545 + labA OKGIIK_10235 0.56 +1.0
2,209,545 + labA OKGIIK_10235 0.56 -0.8
2,209,545 + labA OKGIIK_10235 0.56 -0.9
2,209,545 + labA OKGIIK_10235 0.56 +1.8
2,209,545 + labA OKGIIK_10235 0.56 +0.8
2,209,545 + labA OKGIIK_10235 0.56 -1.1
2,209,545 + labA OKGIIK_10235 0.56 -1.7
2,209,545 + labA OKGIIK_10235 0.56 +0.7
2,209,545 + labA OKGIIK_10235 0.56 +0.6
2,209,545 + labA OKGIIK_10235 0.56 +0.1
2,209,545 + labA OKGIIK_10235 0.56 +0.4
2,209,545 + labA OKGIIK_10235 0.56 +0.0
2,209,545 + labA OKGIIK_10235 0.56 +0.7
2,209,545 + labA OKGIIK_10235 0.56 -0.1
2,209,545 + labA OKGIIK_10235 0.56 +2.4
2,209,546 - labA OKGIIK_10235 0.56 +0.0
2,209,546 - labA OKGIIK_10235 0.56 -1.0
2,209,547 + labA OKGIIK_10235 0.56 -1.0
2,209,547 + labA OKGIIK_10235 0.56 +0.8
2,209,548 - labA OKGIIK_10235 0.56 -2.9
2,209,752 + labA OKGIIK_10235 0.84 +0.9
2,209,752 + labA OKGIIK_10235 0.84 -1.0
2,209,752 + labA OKGIIK_10235 0.84 +0.7
2,209,752 + labA OKGIIK_10235 0.84 +1.4
2,209,752 + labA OKGIIK_10235 0.84 -0.3
2,209,752 + labA OKGIIK_10235 0.84 -0.3
2,209,753 - labA OKGIIK_10235 0.84 +1.6
2,209,753 - labA OKGIIK_10235 0.84 +0.2
2,209,753 - labA OKGIIK_10235 0.84 -0.6
2,209,753 - labA OKGIIK_10235 0.84 -0.1
2,209,753 - labA OKGIIK_10235 0.84 -1.3
2,209,753 - labA OKGIIK_10235 0.84 +0.9
2,209,753 - labA OKGIIK_10235 0.84 -2.7
2,209,753 - labA OKGIIK_10235 0.84 +3.4
2,209,753 - labA OKGIIK_10235 0.84 -0.4
2,209,758 + labA OKGIIK_10235 0.85 +1.0
2,209,768 + labA OKGIIK_10235 0.86 -0.5
2,209,768 + labA OKGIIK_10235 0.86 -1.6
2,209,768 + labA OKGIIK_10235 0.86 +0.2
2,209,768 + labA OKGIIK_10235 0.86 -0.3
2,209,768 + labA OKGIIK_10235 0.86 -1.4
2,209,768 + labA OKGIIK_10235 0.86 -0.6
2,209,768 + labA OKGIIK_10235 0.86 -0.1
2,209,769 - labA OKGIIK_10235 0.86 -0.3
2,209,769 - labA OKGIIK_10235 0.86 +1.6
2,209,769 - labA OKGIIK_10235 0.86 +1.0
2,209,769 - labA OKGIIK_10235 0.86 -1.1
2,209,839 + -0.1
2,209,839 + +0.0
2,209,839 + -0.6
2,209,839 + -0.8
2,209,839 + -1.1
2,209,839 + -0.3
2,209,839 + +1.0
2,209,840 - +1.6
2,209,840 - -0.3
2,209,840 - -2.0
2,209,840 - -1.6
2,209,840 - +1.3
2,209,840 - +1.0
2,209,840 - -1.2
2,209,840 - +1.4
2,209,840 - -0.8
2,209,840 - +0.6
2,209,840 - +0.0
2,209,840 - -0.4
2,209,840 - -0.3
2,209,840 - -1.2
2,209,840 - -1.0
2,209,840 - +0.1
2,211,651 + ispA OKGIIK_10250 0.15 +0.4

Or see this region's nucleotide sequence