Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_10230 and labA are separated by 177 nucleotides labA and OKGIIK_10240 overlap by 4 nucleotides OKGIIK_10240 and xseB are separated by 75 nucleotides xseB and ispA are separated by 22 nucleotides
OKGIIK_10230: OKGIIK_10230 - Bulb-type lectin domain-containing protein, at 2,207,844 to 2,208,956
_10230
OKGIIK_10235: labA - Maebl, at 2,209,134 to 2,209,868
labA
OKGIIK_10240: OKGIIK_10240 - tRNA(Ile)-lysidine synthase, at 2,209,865 to 2,211,166
_10240
OKGIIK_10245: xseB - exodeoxyribonuclease VII small subunit, at 2,211,242 to 2,211,499
xseB
OKGIIK_10250: ispA - geranyl transferase, at 2,211,522 to 2,212,382
ispA
Position (kb)
2209
2210
2211
2212 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2208.885 kb on + strand at 2208.886 kb on - strand at 2208.931 kb on - strand at 2208.931 kb on - strand at 2208.931 kb on - strand at 2208.931 kb on - strand at 2208.931 kb on - strand at 2209.095 kb on + strand at 2209.113 kb on + strand at 2209.113 kb on + strand at 2209.156 kb on + strand at 2209.156 kb on + strand at 2209.221 kb on + strand, within labA at 2209.221 kb on + strand, within labA at 2209.221 kb on + strand, within labA at 2209.221 kb on + strand, within labA at 2209.221 kb on + strand, within labA at 2209.222 kb on - strand, within labA at 2209.222 kb on - strand, within labA at 2209.222 kb on - strand, within labA at 2209.248 kb on + strand, within labA at 2209.248 kb on + strand, within labA at 2209.332 kb on + strand, within labA at 2209.392 kb on + strand, within labA at 2209.392 kb on + strand, within labA at 2209.392 kb on + strand, within labA at 2209.485 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.545 kb on + strand, within labA at 2209.546 kb on - strand, within labA at 2209.546 kb on - strand, within labA at 2209.547 kb on + strand, within labA at 2209.547 kb on + strand, within labA at 2209.548 kb on - strand, within labA at 2209.752 kb on + strand, within labA at 2209.752 kb on + strand, within labA at 2209.752 kb on + strand, within labA at 2209.752 kb on + strand, within labA at 2209.752 kb on + strand, within labA at 2209.752 kb on + strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.753 kb on - strand, within labA at 2209.758 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.768 kb on + strand, within labA at 2209.769 kb on - strand, within labA at 2209.769 kb on - strand, within labA at 2209.769 kb on - strand, within labA at 2209.769 kb on - strand, within labA at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.839 kb on + strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2209.840 kb on - strand at 2211.651 kb on + strand, within ispA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 2,208,885 + -1.3 2,208,886 - +0.0 2,208,931 - +0.2 2,208,931 - +1.8 2,208,931 - -1.6 2,208,931 - -0.6 2,208,931 - +1.4 2,209,095 + -0.6 2,209,113 + +1.7 2,209,113 + +2.3 2,209,156 + +0.8 2,209,156 + +0.0 2,209,221 + labA OKGIIK_10235 0.12 +0.1 2,209,221 + labA OKGIIK_10235 0.12 -0.3 2,209,221 + labA OKGIIK_10235 0.12 -1.1 2,209,221 + labA OKGIIK_10235 0.12 -1.6 2,209,221 + labA OKGIIK_10235 0.12 +0.6 2,209,222 - labA OKGIIK_10235 0.12 +1.8 2,209,222 - labA OKGIIK_10235 0.12 +0.4 2,209,222 - labA OKGIIK_10235 0.12 -1.7 2,209,248 + labA OKGIIK_10235 0.16 -0.6 2,209,248 + labA OKGIIK_10235 0.16 -0.6 2,209,332 + labA OKGIIK_10235 0.27 -1.1 2,209,392 + labA OKGIIK_10235 0.35 +0.2 2,209,392 + labA OKGIIK_10235 0.35 -1.7 2,209,392 + labA OKGIIK_10235 0.35 -1.0 2,209,485 + labA OKGIIK_10235 0.48 -0.8 2,209,545 + labA OKGIIK_10235 0.56 -0.3 2,209,545 + labA OKGIIK_10235 0.56 -0.4 2,209,545 + labA OKGIIK_10235 0.56 -0.6 2,209,545 + labA OKGIIK_10235 0.56 -1.1 2,209,545 + labA OKGIIK_10235 0.56 +0.7 2,209,545 + labA OKGIIK_10235 0.56 -1.4 2,209,545 + labA OKGIIK_10235 0.56 -0.1 2,209,545 + labA OKGIIK_10235 0.56 -0.6 2,209,545 + labA OKGIIK_10235 0.56 +0.0 2,209,545 + labA OKGIIK_10235 0.56 -0.3 2,209,545 + labA OKGIIK_10235 0.56 +1.0 2,209,545 + labA OKGIIK_10235 0.56 -0.8 2,209,545 + labA OKGIIK_10235 0.56 -0.9 2,209,545 + labA OKGIIK_10235 0.56 +1.8 2,209,545 + labA OKGIIK_10235 0.56 +0.8 2,209,545 + labA OKGIIK_10235 0.56 -1.1 2,209,545 + labA OKGIIK_10235 0.56 -1.7 2,209,545 + labA OKGIIK_10235 0.56 +0.7 2,209,545 + labA OKGIIK_10235 0.56 +0.6 2,209,545 + labA OKGIIK_10235 0.56 +0.1 2,209,545 + labA OKGIIK_10235 0.56 +0.4 2,209,545 + labA OKGIIK_10235 0.56 +0.0 2,209,545 + labA OKGIIK_10235 0.56 +0.7 2,209,545 + labA OKGIIK_10235 0.56 -0.1 2,209,545 + labA OKGIIK_10235 0.56 +2.4 2,209,546 - labA OKGIIK_10235 0.56 +0.0 2,209,546 - labA OKGIIK_10235 0.56 -1.0 2,209,547 + labA OKGIIK_10235 0.56 -1.0 2,209,547 + labA OKGIIK_10235 0.56 +0.8 2,209,548 - labA OKGIIK_10235 0.56 -2.9 2,209,752 + labA OKGIIK_10235 0.84 +0.9 2,209,752 + labA OKGIIK_10235 0.84 -1.0 2,209,752 + labA OKGIIK_10235 0.84 +0.7 2,209,752 + labA OKGIIK_10235 0.84 +1.4 2,209,752 + labA OKGIIK_10235 0.84 -0.3 2,209,752 + labA OKGIIK_10235 0.84 -0.3 2,209,753 - labA OKGIIK_10235 0.84 +1.6 2,209,753 - labA OKGIIK_10235 0.84 +0.2 2,209,753 - labA OKGIIK_10235 0.84 -0.6 2,209,753 - labA OKGIIK_10235 0.84 -0.1 2,209,753 - labA OKGIIK_10235 0.84 -1.3 2,209,753 - labA OKGIIK_10235 0.84 +0.9 2,209,753 - labA OKGIIK_10235 0.84 -2.7 2,209,753 - labA OKGIIK_10235 0.84 +3.4 2,209,753 - labA OKGIIK_10235 0.84 -0.4 2,209,758 + labA OKGIIK_10235 0.85 +1.0 2,209,768 + labA OKGIIK_10235 0.86 -0.5 2,209,768 + labA OKGIIK_10235 0.86 -1.6 2,209,768 + labA OKGIIK_10235 0.86 +0.2 2,209,768 + labA OKGIIK_10235 0.86 -0.3 2,209,768 + labA OKGIIK_10235 0.86 -1.4 2,209,768 + labA OKGIIK_10235 0.86 -0.6 2,209,768 + labA OKGIIK_10235 0.86 -0.1 2,209,769 - labA OKGIIK_10235 0.86 -0.3 2,209,769 - labA OKGIIK_10235 0.86 +1.6 2,209,769 - labA OKGIIK_10235 0.86 +1.0 2,209,769 - labA OKGIIK_10235 0.86 -1.1 2,209,839 + -0.1 2,209,839 + +0.0 2,209,839 + -0.6 2,209,839 + -0.8 2,209,839 + -1.1 2,209,839 + -0.3 2,209,839 + +1.0 2,209,840 - +1.6 2,209,840 - -0.3 2,209,840 - -2.0 2,209,840 - -1.6 2,209,840 - +1.3 2,209,840 - +1.0 2,209,840 - -1.2 2,209,840 - +1.4 2,209,840 - -0.8 2,209,840 - +0.6 2,209,840 - +0.0 2,209,840 - -0.4 2,209,840 - -0.3 2,209,840 - -1.2 2,209,840 - -1.0 2,209,840 - +0.1 2,211,651 + ispA OKGIIK_10250 0.15 +0.4
Or see this region's nucleotide sequence