Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01509

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01508 and MPMX19_01509 are separated by 46 nucleotidesMPMX19_01509 and MPMX19_01510 are separated by 63 nucleotidesMPMX19_01510 and MPMX19_01511 are separated by 178 nucleotides MPMX19_01508: MPMX19_01508 - hypothetical protein, at 1,578,903 to 1,580,039 _01508 MPMX19_01509: MPMX19_01509 - DNA topoisomerase 1, at 1,580,086 to 1,582,890 _01509 MPMX19_01510: MPMX19_01510 - hypothetical protein, at 1,582,954 to 1,583,508 _01510 MPMX19_01511: MPMX19_01511 - HTH-type transcriptional activator RhaR, at 1,583,687 to 1,584,583 _01511 Position (kb) 1580 1581 1582 1583Strain fitness (log2 ratio) -2 -1 0 1 2at 1579.170 kb on + strand, within MPMX19_01508at 1579.170 kb on + strand, within MPMX19_01508at 1579.443 kb on + strand, within MPMX19_01508at 1579.467 kb on + strand, within MPMX19_01508at 1579.468 kb on - strand, within MPMX19_01508at 1579.468 kb on - strand, within MPMX19_01508at 1579.468 kb on - strand, within MPMX19_01508at 1579.706 kb on + strand, within MPMX19_01508at 1579.706 kb on + strand, within MPMX19_01508at 1579.706 kb on + strand, within MPMX19_01508at 1579.707 kb on - strand, within MPMX19_01508at 1579.707 kb on - strand, within MPMX19_01508at 1582.576 kb on + strand, within MPMX19_01509at 1582.888 kb on + strandat 1582.888 kb on + strandat 1582.888 kb on + strandat 1582.888 kb on + strandat 1582.889 kb on - strandat 1582.889 kb on - strandat 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.261 kb on + strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.262 kb on - strand, within MPMX19_01510at 1583.567 kb on + strandat 1583.567 kb on + strandat 1583.568 kb on - strandat 1583.568 kb on - strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.600 kb on + strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.601 kb on - strandat 1583.610 kb on + strandat 1583.610 kb on + strandat 1583.610 kb on + strandat 1583.611 kb on - strandat 1583.611 kb on - strandat 1583.611 kb on - strandat 1583.611 kb on - strandat 1583.611 kb on - strandat 1583.611 kb on - strandat 1583.676 kb on + strandat 1583.676 kb on + strandat 1583.676 kb on + strandat 1583.677 kb on - strandat 1583.677 kb on - strandat 1583.677 kb on - strandat 1583.677 kb on - strandat 1583.706 kb on + strandat 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.819 kb on + strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.820 kb on - strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.843 kb on + strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.844 kb on - strand, within MPMX19_01511at 1583.879 kb on + strand, within MPMX19_01511at 1583.879 kb on + strand, within MPMX19_01511at 1583.879 kb on + strand, within MPMX19_01511at 1583.879 kb on + strand, within MPMX19_01511

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,579,170 + MPMX19_01508 0.23 -0.7
1,579,170 + MPMX19_01508 0.23 -0.5
1,579,443 + MPMX19_01508 0.47 -2.7
1,579,467 + MPMX19_01508 0.50 +0.0
1,579,468 - MPMX19_01508 0.50 -1.9
1,579,468 - MPMX19_01508 0.50 +0.1
1,579,468 - MPMX19_01508 0.50 +0.8
1,579,706 + MPMX19_01508 0.71 -1.2
1,579,706 + MPMX19_01508 0.71 -1.0
1,579,706 + MPMX19_01508 0.71 +0.2
1,579,707 - MPMX19_01508 0.71 -0.5
1,579,707 - MPMX19_01508 0.71 -0.7
1,582,576 + MPMX19_01509 0.89 +0.0
1,582,888 + -1.0
1,582,888 + +0.4
1,582,888 + -0.5
1,582,888 + -2.3
1,582,889 - -1.2
1,582,889 - -0.1
1,583,261 + MPMX19_01510 0.55 -0.5
1,583,261 + MPMX19_01510 0.55 -0.8
1,583,261 + MPMX19_01510 0.55 -1.0
1,583,261 + MPMX19_01510 0.55 -1.9
1,583,261 + MPMX19_01510 0.55 -1.4
1,583,261 + MPMX19_01510 0.55 -0.5
1,583,261 + MPMX19_01510 0.55 -0.8
1,583,261 + MPMX19_01510 0.55 -0.8
1,583,261 + MPMX19_01510 0.55 -0.8
1,583,261 + MPMX19_01510 0.55 -1.3
1,583,262 - MPMX19_01510 0.55 -1.8
1,583,262 - MPMX19_01510 0.55 -0.6
1,583,262 - MPMX19_01510 0.55 +1.4
1,583,262 - MPMX19_01510 0.55 +0.5
1,583,262 - MPMX19_01510 0.55 -0.8
1,583,262 - MPMX19_01510 0.55 -2.6
1,583,567 + -1.3
1,583,567 + +0.5
1,583,568 - +1.8
1,583,568 - -0.8
1,583,600 + -0.8
1,583,600 + -0.6
1,583,600 + -1.6
1,583,600 + -0.6
1,583,600 + +0.2
1,583,600 + -2.1
1,583,600 + -0.2
1,583,600 + -1.2
1,583,600 + +0.0
1,583,600 + -0.7
1,583,601 - +1.0
1,583,601 - +0.4
1,583,601 - -1.3
1,583,601 - -1.2
1,583,601 - -1.3
1,583,601 - -0.6
1,583,601 - +0.2
1,583,601 - -0.7
1,583,601 - -1.5
1,583,601 - -1.0
1,583,601 - -0.7
1,583,601 - -2.2
1,583,610 + +0.0
1,583,610 + -1.0
1,583,610 + -1.6
1,583,611 - -0.3
1,583,611 - -0.8
1,583,611 - -1.5
1,583,611 - -0.8
1,583,611 - -0.3
1,583,611 - +0.0
1,583,676 + -1.2
1,583,676 + -0.5
1,583,676 + -1.2
1,583,677 - -2.0
1,583,677 - -0.6
1,583,677 - -0.2
1,583,677 - +1.0
1,583,706 + +0.6
1,583,819 + MPMX19_01511 0.15 -0.2
1,583,819 + MPMX19_01511 0.15 -1.6
1,583,819 + MPMX19_01511 0.15 -1.7
1,583,819 + MPMX19_01511 0.15 +0.5
1,583,819 + MPMX19_01511 0.15 -0.5
1,583,819 + MPMX19_01511 0.15 -0.6
1,583,819 + MPMX19_01511 0.15 +0.8
1,583,819 + MPMX19_01511 0.15 +0.3
1,583,819 + MPMX19_01511 0.15 +0.8
1,583,819 + MPMX19_01511 0.15 +0.4
1,583,819 + MPMX19_01511 0.15 -1.1
1,583,819 + MPMX19_01511 0.15 -1.3
1,583,819 + MPMX19_01511 0.15 -0.8
1,583,819 + MPMX19_01511 0.15 +0.4
1,583,819 + MPMX19_01511 0.15 +2.4
1,583,819 + MPMX19_01511 0.15 +0.5
1,583,820 - MPMX19_01511 0.15 -1.2
1,583,820 - MPMX19_01511 0.15 +0.0
1,583,820 - MPMX19_01511 0.15 -0.6
1,583,820 - MPMX19_01511 0.15 -0.6
1,583,820 - MPMX19_01511 0.15 -1.2
1,583,820 - MPMX19_01511 0.15 -0.7
1,583,820 - MPMX19_01511 0.15 -2.0
1,583,820 - MPMX19_01511 0.15 -0.3
1,583,820 - MPMX19_01511 0.15 -0.2
1,583,820 - MPMX19_01511 0.15 -1.1
1,583,843 + MPMX19_01511 0.17 -0.6
1,583,843 + MPMX19_01511 0.17 -1.1
1,583,843 + MPMX19_01511 0.17 -0.8
1,583,843 + MPMX19_01511 0.17 +0.4
1,583,843 + MPMX19_01511 0.17 -0.1
1,583,843 + MPMX19_01511 0.17 +0.2
1,583,843 + MPMX19_01511 0.17 -0.7
1,583,843 + MPMX19_01511 0.17 -0.7
1,583,843 + MPMX19_01511 0.17 +0.8
1,583,843 + MPMX19_01511 0.17 -0.6
1,583,843 + MPMX19_01511 0.17 +0.2
1,583,843 + MPMX19_01511 0.17 -0.2
1,583,843 + MPMX19_01511 0.17 +0.6
1,583,843 + MPMX19_01511 0.17 +0.8
1,583,843 + MPMX19_01511 0.17 -0.6
1,583,843 + MPMX19_01511 0.17 -0.1
1,583,843 + MPMX19_01511 0.17 -1.2
1,583,843 + MPMX19_01511 0.17 +0.3
1,583,843 + MPMX19_01511 0.17 -0.1
1,583,843 + MPMX19_01511 0.17 -2.5
1,583,843 + MPMX19_01511 0.17 -1.1
1,583,843 + MPMX19_01511 0.17 -0.8
1,583,843 + MPMX19_01511 0.17 -0.2
1,583,843 + MPMX19_01511 0.17 +0.5
1,583,843 + MPMX19_01511 0.17 +0.8
1,583,843 + MPMX19_01511 0.17 -0.8
1,583,843 + MPMX19_01511 0.17 -1.3
1,583,843 + MPMX19_01511 0.17 -0.6
1,583,843 + MPMX19_01511 0.17 -0.5
1,583,843 + MPMX19_01511 0.17 -0.5
1,583,843 + MPMX19_01511 0.17 -1.2
1,583,843 + MPMX19_01511 0.17 -1.2
1,583,843 + MPMX19_01511 0.17 +0.5
1,583,843 + MPMX19_01511 0.17 -1.0
1,583,843 + MPMX19_01511 0.17 -0.2
1,583,843 + MPMX19_01511 0.17 -0.2
1,583,843 + MPMX19_01511 0.17 -1.0
1,583,843 + MPMX19_01511 0.17 -1.9
1,583,843 + MPMX19_01511 0.17 -0.3
1,583,844 - MPMX19_01511 0.18 -0.0
1,583,844 - MPMX19_01511 0.18 -0.1
1,583,844 - MPMX19_01511 0.18 -2.0
1,583,844 - MPMX19_01511 0.18 +0.8
1,583,844 - MPMX19_01511 0.18 -0.2
1,583,844 - MPMX19_01511 0.18 -1.1
1,583,844 - MPMX19_01511 0.18 -1.1
1,583,844 - MPMX19_01511 0.18 -0.2
1,583,844 - MPMX19_01511 0.18 -1.2
1,583,844 - MPMX19_01511 0.18 -0.7
1,583,844 - MPMX19_01511 0.18 -1.3
1,583,844 - MPMX19_01511 0.18 -1.6
1,583,844 - MPMX19_01511 0.18 -1.8
1,583,844 - MPMX19_01511 0.18 -2.6
1,583,844 - MPMX19_01511 0.18 -1.6
1,583,844 - MPMX19_01511 0.18 -0.1
1,583,844 - MPMX19_01511 0.18 +0.4
1,583,844 - MPMX19_01511 0.18 -0.5
1,583,844 - MPMX19_01511 0.18 -2.2
1,583,844 - MPMX19_01511 0.18 -2.7
1,583,844 - MPMX19_01511 0.18 -2.0
1,583,844 - MPMX19_01511 0.18 +0.0
1,583,844 - MPMX19_01511 0.18 +2.4
1,583,844 - MPMX19_01511 0.18 -1.6
1,583,844 - MPMX19_01511 0.18 -0.9
1,583,844 - MPMX19_01511 0.18 -0.0
1,583,844 - MPMX19_01511 0.18 -1.3
1,583,844 - MPMX19_01511 0.18 +0.4
1,583,844 - MPMX19_01511 0.18 +0.2
1,583,844 - MPMX19_01511 0.18 -1.6
1,583,844 - MPMX19_01511 0.18 +0.1
1,583,844 - MPMX19_01511 0.18 -0.8
1,583,844 - MPMX19_01511 0.18 -0.1
1,583,844 - MPMX19_01511 0.18 -1.2
1,583,844 - MPMX19_01511 0.18 +0.2
1,583,844 - MPMX19_01511 0.18 -2.0
1,583,844 - MPMX19_01511 0.18 +0.5
1,583,844 - MPMX19_01511 0.18 +0.5
1,583,879 + MPMX19_01511 0.21 -0.8
1,583,879 + MPMX19_01511 0.21 +0.5
1,583,879 + MPMX19_01511 0.21 -1.5
1,583,879 + MPMX19_01511 0.21 -1.2

Or see this region's nucleotide sequence