Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05500

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05490 and ABID97_RS05495 are separated by 7 nucleotidesABID97_RS05495 and ABID97_RS05500 are separated by 16 nucleotidesABID97_RS05500 and ABID97_RS05505 overlap by 4 nucleotidesABID97_RS05505 and ABID97_RS05510 overlap by 4 nucleotides ABID97_RS05490: ABID97_RS05490 - PAS domain S-box protein, at 1,151,661 to 1,153,604 _RS05490 ABID97_RS05495: ABID97_RS05495 - ammonia-dependent NAD(+) synthetase, at 1,153,612 to 1,154,460 _RS05495 ABID97_RS05500: ABID97_RS05500 - phospholipase A, at 1,154,477 to 1,155,643 _RS05500 ABID97_RS05505: ABID97_RS05505 - hypothetical protein, at 1,155,640 to 1,156,101 _RS05505 ABID97_RS05510: ABID97_RS05510 - UvrD-helicase domain-containing protein, at 1,156,098 to 1,158,203 _RS05510 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -1 0 1at 1153.739 kb on + strand, within ABID97_RS05495at 1153.739 kb on + strand, within ABID97_RS05495at 1153.739 kb on + strand, within ABID97_RS05495at 1153.739 kb on + strand, within ABID97_RS05495at 1153.740 kb on - strand, within ABID97_RS05495at 1154.192 kb on + strand, within ABID97_RS05495at 1154.193 kb on - strand, within ABID97_RS05495at 1154.529 kb on + strandat 1154.530 kb on - strandat 1154.530 kb on - strandat 1154.530 kb on - strandat 1154.550 kb on + strandat 1154.551 kb on - strandat 1154.730 kb on + strand, within ABID97_RS05500at 1154.730 kb on + strand, within ABID97_RS05500at 1154.838 kb on + strand, within ABID97_RS05500at 1154.838 kb on + strand, within ABID97_RS05500at 1154.839 kb on - strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.958 kb on + strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.959 kb on - strand, within ABID97_RS05500at 1154.960 kb on + strand, within ABID97_RS05500at 1154.960 kb on + strand, within ABID97_RS05500at 1154.960 kb on + strand, within ABID97_RS05500at 1154.960 kb on + strand, within ABID97_RS05500at 1154.961 kb on - strand, within ABID97_RS05500at 1154.961 kb on - strand, within ABID97_RS05500at 1154.961 kb on - strand, within ABID97_RS05500at 1154.961 kb on - strand, within ABID97_RS05500at 1154.961 kb on - strand, within ABID97_RS05500at 1155.109 kb on + strand, within ABID97_RS05500at 1155.110 kb on - strand, within ABID97_RS05500at 1155.110 kb on - strand, within ABID97_RS05500at 1155.148 kb on - strand, within ABID97_RS05500at 1155.309 kb on + strand, within ABID97_RS05500at 1155.626 kb on + strandat 1155.626 kb on + strandat 1155.626 kb on + strandat 1155.626 kb on + strandat 1155.627 kb on - strandat 1155.627 kb on - strandat 1155.906 kb on - strand, within ABID97_RS05505at 1155.906 kb on - strand, within ABID97_RS05505at 1155.929 kb on - strand, within ABID97_RS05505at 1155.929 kb on - strand, within ABID97_RS05505

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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1,153,739 + ABID97_RS05495 0.15 -0.0
1,153,739 + ABID97_RS05495 0.15 -1.2
1,153,739 + ABID97_RS05495 0.15 +0.2
1,153,739 + ABID97_RS05495 0.15 +0.2
1,153,740 - ABID97_RS05495 0.15 +0.6
1,154,192 + ABID97_RS05495 0.68 -0.1
1,154,193 - ABID97_RS05495 0.68 +0.4
1,154,529 + +0.6
1,154,530 - -0.3
1,154,530 - -0.4
1,154,530 - +0.0
1,154,550 + -0.1
1,154,551 - +0.0
1,154,730 + ABID97_RS05500 0.22 -1.0
1,154,730 + ABID97_RS05500 0.22 +0.5
1,154,838 + ABID97_RS05500 0.31 +0.4
1,154,838 + ABID97_RS05500 0.31 -0.2
1,154,839 - ABID97_RS05500 0.31 -0.9
1,154,958 + ABID97_RS05500 0.41 -0.2
1,154,958 + ABID97_RS05500 0.41 -0.8
1,154,958 + ABID97_RS05500 0.41 -0.2
1,154,958 + ABID97_RS05500 0.41 +0.4
1,154,958 + ABID97_RS05500 0.41 +0.2
1,154,958 + ABID97_RS05500 0.41 -0.2
1,154,958 + ABID97_RS05500 0.41 -0.0
1,154,958 + ABID97_RS05500 0.41 +0.2
1,154,958 + ABID97_RS05500 0.41 +0.0
1,154,958 + ABID97_RS05500 0.41 +0.3
1,154,958 + ABID97_RS05500 0.41 +1.2
1,154,958 + ABID97_RS05500 0.41 +0.3
1,154,958 + ABID97_RS05500 0.41 +0.3
1,154,958 + ABID97_RS05500 0.41 +1.0
1,154,958 + ABID97_RS05500 0.41 -0.0
1,154,958 + ABID97_RS05500 0.41 -0.1
1,154,958 + ABID97_RS05500 0.41 -0.5
1,154,958 + ABID97_RS05500 0.41 +0.1
1,154,958 + ABID97_RS05500 0.41 -0.8
1,154,958 + ABID97_RS05500 0.41 +0.1
1,154,959 - ABID97_RS05500 0.41 +0.2
1,154,959 - ABID97_RS05500 0.41 -0.0
1,154,959 - ABID97_RS05500 0.41 -0.1
1,154,959 - ABID97_RS05500 0.41 -0.1
1,154,959 - ABID97_RS05500 0.41 +0.1
1,154,959 - ABID97_RS05500 0.41 +0.8
1,154,959 - ABID97_RS05500 0.41 +1.4
1,154,959 - ABID97_RS05500 0.41 +0.2
1,154,959 - ABID97_RS05500 0.41 +0.2
1,154,959 - ABID97_RS05500 0.41 +0.3
1,154,959 - ABID97_RS05500 0.41 +0.5
1,154,959 - ABID97_RS05500 0.41 +0.2
1,154,959 - ABID97_RS05500 0.41 -0.7
1,154,959 - ABID97_RS05500 0.41 +0.1
1,154,959 - ABID97_RS05500 0.41 +0.3
1,154,959 - ABID97_RS05500 0.41 +0.1
1,154,959 - ABID97_RS05500 0.41 +0.4
1,154,959 - ABID97_RS05500 0.41 +0.1
1,154,960 + ABID97_RS05500 0.41 +0.6
1,154,960 + ABID97_RS05500 0.41 +0.2
1,154,960 + ABID97_RS05500 0.41 +0.1
1,154,960 + ABID97_RS05500 0.41 +1.2
1,154,961 - ABID97_RS05500 0.41 -0.5
1,154,961 - ABID97_RS05500 0.41 -0.1
1,154,961 - ABID97_RS05500 0.41 -0.3
1,154,961 - ABID97_RS05500 0.41 -0.7
1,154,961 - ABID97_RS05500 0.41 -0.3
1,155,109 + ABID97_RS05500 0.54 +0.8
1,155,110 - ABID97_RS05500 0.54 -0.0
1,155,110 - ABID97_RS05500 0.54 -0.9
1,155,148 - ABID97_RS05500 0.57 +0.5
1,155,309 + ABID97_RS05500 0.71 +0.9
1,155,626 + -0.2
1,155,626 + +0.0
1,155,626 + +0.5
1,155,626 + -0.1
1,155,627 - +0.0
1,155,627 - +0.2
1,155,906 - ABID97_RS05505 0.58 -1.2
1,155,906 - ABID97_RS05505 0.58 +0.0
1,155,929 - ABID97_RS05505 0.63 -0.2
1,155,929 - ABID97_RS05505 0.63 +0.7

Or see this region's nucleotide sequence