Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4979.1 and Xcc-8004.4980.1 are separated by 83 nucleotides Xcc-8004.4980.1 and Xcc-8004.4982.1 are separated by 153 nucleotides Xcc-8004.4982.1 and Xcc-8004.4983.1 are separated by 232 nucleotides Xcc-8004.4983.1 and Xcc-8004.4984.1 are separated by 76 nucleotides
Xcc-8004.4979.1: Xcc-8004.4979.1 - Beta-lactamase related protein, at 4,728,017 to 4,728,961
Xcc-8004.4979.1
Xcc-8004.4980.1: Xcc-8004.4980.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 4,729,045 to 4,730,340
Xcc-8004.4980.1
Xcc-8004.4982.1: Xcc-8004.4982.1 - Protein yjbJ, at 4,730,494 to 4,730,703
Xcc-8004.4982.1
Xcc-8004.4983.1: Xcc-8004.4983.1 - hypothetical protein, at 4,730,936 to 4,731,070
Xcc-8004.4983.1
Xcc-8004.4984.1: Xcc-8004.4984.1 - hypothetical protein, at 4,731,147 to 4,731,299
Xcc-8004.4984.1
Position (kb) 4729
4730
4731 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4728.147 kb on + strand, within Xcc-8004.4979.1 at 4728.148 kb on - strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.282 kb on + strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.283 kb on - strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.294 kb on + strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.295 kb on - strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.526 kb on + strand, within Xcc-8004.4979.1 at 4728.527 kb on - strand, within Xcc-8004.4979.1 at 4728.597 kb on + strand, within Xcc-8004.4979.1 at 4728.624 kb on + strand, within Xcc-8004.4979.1 at 4728.667 kb on + strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.668 kb on - strand, within Xcc-8004.4979.1 at 4728.889 kb on - strand at 4728.889 kb on - strand at 4728.997 kb on + strand at 4728.997 kb on + strand at 4728.998 kb on - strand at 4730.341 kb on - strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.565 kb on - strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.592 kb on - strand, within Xcc-8004.4982.1 at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4731.070 kb on + strand at 4731.070 kb on + strand at 4731.087 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.155 kb on + strand at 4731.156 kb on - strand at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 4,728,147 + Xcc-8004.4979.1 0.14 -1.0 4,728,148 - Xcc-8004.4979.1 0.14 +1.1 4,728,282 + Xcc-8004.4979.1 0.28 +0.3 4,728,282 + Xcc-8004.4979.1 0.28 +0.4 4,728,282 + Xcc-8004.4979.1 0.28 +0.3 4,728,283 - Xcc-8004.4979.1 0.28 -0.1 4,728,283 - Xcc-8004.4979.1 0.28 -1.1 4,728,283 - Xcc-8004.4979.1 0.28 +0.6 4,728,294 + Xcc-8004.4979.1 0.29 +0.4 4,728,294 + Xcc-8004.4979.1 0.29 -0.4 4,728,294 + Xcc-8004.4979.1 0.29 +0.1 4,728,294 + Xcc-8004.4979.1 0.29 +0.5 4,728,294 + Xcc-8004.4979.1 0.29 -1.3 4,728,295 - Xcc-8004.4979.1 0.29 +2.3 4,728,295 - Xcc-8004.4979.1 0.29 +1.2 4,728,295 - Xcc-8004.4979.1 0.29 +1.5 4,728,295 - Xcc-8004.4979.1 0.29 +0.1 4,728,295 - Xcc-8004.4979.1 0.29 -1.5 4,728,295 - Xcc-8004.4979.1 0.29 -1.9 4,728,526 + Xcc-8004.4979.1 0.54 +0.6 4,728,526 + Xcc-8004.4979.1 0.54 -0.7 4,728,527 - Xcc-8004.4979.1 0.54 +0.2 4,728,597 + Xcc-8004.4979.1 0.61 +1.4 4,728,624 + Xcc-8004.4979.1 0.64 -2.6 4,728,667 + Xcc-8004.4979.1 0.69 +0.4 4,728,668 - Xcc-8004.4979.1 0.69 -0.7 4,728,668 - Xcc-8004.4979.1 0.69 +1.3 4,728,668 - Xcc-8004.4979.1 0.69 -1.7 4,728,889 - +1.0 4,728,889 - -1.7 4,728,997 + +0.2 4,728,997 + +0.1 4,728,998 - +0.4 4,730,341 - +0.5 4,730,415 + -1.3 4,730,415 + -0.1 4,730,415 + +0.4 4,730,415 + -0.1 4,730,565 - Xcc-8004.4982.1 0.34 -0.5 4,730,591 + Xcc-8004.4982.1 0.46 +0.5 4,730,591 + Xcc-8004.4982.1 0.46 +0.6 4,730,592 - Xcc-8004.4982.1 0.47 -0.5 4,730,857 + +0.8 4,730,857 + -0.3 4,730,857 + -0.5 4,730,857 + +0.9 4,730,857 + -2.6 4,730,858 - +0.3 4,730,858 - +0.4 4,730,858 - -1.2 4,731,070 + +1.7 4,731,070 + +1.6 4,731,087 - -0.1 4,731,149 - -0.1 4,731,149 - +1.7 4,731,149 - -0.9 4,731,155 + -1.3 4,731,156 - +2.9 4,731,236 + Xcc-8004.4984.1 0.58 -1.5 4,731,236 + Xcc-8004.4984.1 0.58 -1.3 4,731,236 + Xcc-8004.4984.1 0.58 -1.1 4,731,236 + Xcc-8004.4984.1 0.58 +0.6 4,731,237 - Xcc-8004.4984.1 0.59 -0.0 4,731,237 - Xcc-8004.4984.1 0.59 -2.3 4,731,237 - Xcc-8004.4984.1 0.59 -2.3 4,731,237 - Xcc-8004.4984.1 0.59 -2.5 4,731,237 - Xcc-8004.4984.1 0.59 -1.3
Or see this region's nucleotide sequence