Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.449.1 and Xcc-8004.451.1 are separated by 267 nucleotides Xcc-8004.451.1 and Xcc-8004.453.1 are separated by 411 nucleotides Xcc-8004.453.1 and Xcc-8004.454.1 are separated by 72 nucleotides
Xcc-8004.449.1: Xcc-8004.449.1 - Integrase, at 413,800 to 414,813
Xcc-8004.449.1
Xcc-8004.451.1: Xcc-8004.451.1 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 415,081 to 416,919
Xcc-8004.451.1
Xcc-8004.453.1: Xcc-8004.453.1 - Proteinase inhibitor, at 417,331 to 417,597
Xcc-8004.453.1
Xcc-8004.454.1: Xcc-8004.454.1 - FIG01211924: hypothetical protein, at 417,670 to 417,861
Xcc-8004.454.1
Position (kb) 415
416
417 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 414.226 kb on + strand, within Xcc-8004.449.1 at 414.227 kb on - strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.368 kb on + strand, within Xcc-8004.449.1 at 414.369 kb on - strand, within Xcc-8004.449.1 at 414.369 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.464 kb on - strand, within Xcc-8004.449.1 at 414.496 kb on + strand, within Xcc-8004.449.1 at 414.496 kb on + strand, within Xcc-8004.449.1 at 414.560 kb on + strand, within Xcc-8004.449.1 at 414.561 kb on - strand, within Xcc-8004.449.1 at 414.587 kb on + strand, within Xcc-8004.449.1 at 414.739 kb on + strand at 414.739 kb on + strand at 414.739 kb on + strand at 414.740 kb on - strand at 414.740 kb on - strand at 414.827 kb on - strand at 415.028 kb on - strand at 415.028 kb on - strand at 415.037 kb on + strand at 415.056 kb on + strand at 415.146 kb on - strand at 415.146 kb on - strand at 415.434 kb on - strand, within Xcc-8004.451.1 at 415.649 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.793 kb on + strand, within Xcc-8004.451.1 at 415.800 kb on + strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 415.801 kb on - strand, within Xcc-8004.451.1 at 416.710 kb on + strand, within Xcc-8004.451.1 at 416.710 kb on + strand, within Xcc-8004.451.1 at 416.837 kb on + strand at 417.021 kb on - strand at 417.021 kb on - strand at 417.175 kb on - strand at 417.309 kb on + strand at 417.309 kb on + strand at 417.319 kb on + strand at 417.319 kb on + strand at 417.320 kb on - strand at 417.916 kb on + strand at 417.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) remove 414,226 + Xcc-8004.449.1 0.42 +0.7 414,227 - Xcc-8004.449.1 0.42 +1.3 414,368 + Xcc-8004.449.1 0.56 +2.9 414,368 + Xcc-8004.449.1 0.56 +0.9 414,368 + Xcc-8004.449.1 0.56 +0.7 414,368 + Xcc-8004.449.1 0.56 -3.1 414,368 + Xcc-8004.449.1 0.56 -0.1 414,368 + Xcc-8004.449.1 0.56 +0.7 414,369 - Xcc-8004.449.1 0.56 -0.9 414,369 - Xcc-8004.449.1 0.56 -0.5 414,464 - Xcc-8004.449.1 0.65 +0.2 414,464 - Xcc-8004.449.1 0.65 +0.5 414,464 - Xcc-8004.449.1 0.65 +0.4 414,496 + Xcc-8004.449.1 0.69 -0.9 414,496 + Xcc-8004.449.1 0.69 -0.5 414,560 + Xcc-8004.449.1 0.75 +0.8 414,561 - Xcc-8004.449.1 0.75 +2.7 414,587 + Xcc-8004.449.1 0.78 -1.4 414,739 + -3.9 414,739 + +1.0 414,739 + -0.6 414,740 - -0.3 414,740 - -0.9 414,827 - -1.4 415,028 - -0.1 415,028 - +0.7 415,037 + +0.9 415,056 + -1.0 415,146 - -3.2 415,146 - -2.3 415,434 - Xcc-8004.451.1 0.19 -3.0 415,649 + Xcc-8004.451.1 0.31 -0.9 415,793 + Xcc-8004.451.1 0.39 -2.3 415,793 + Xcc-8004.451.1 0.39 -2.8 415,793 + Xcc-8004.451.1 0.39 -2.5 415,800 + Xcc-8004.451.1 0.39 -3.3 415,801 - Xcc-8004.451.1 0.39 -2.3 415,801 - Xcc-8004.451.1 0.39 -1.0 415,801 - Xcc-8004.451.1 0.39 -2.6 416,710 + Xcc-8004.451.1 0.89 -3.7 416,710 + Xcc-8004.451.1 0.89 -5.3 416,837 + -2.3 417,021 - +0.8 417,021 - +2.8 417,175 - -0.3 417,309 + +0.0 417,309 + -0.5 417,319 + -0.9 417,319 + +0.9 417,320 - -0.4 417,916 + -0.8 417,916 + -0.7
Or see this region's nucleotide sequence