Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08425 and ABZR86_RS08430 are separated by 99 nucleotides ABZR86_RS08430 and ABZR86_RS08435 are separated by 2 nucleotides
ABZR86_RS08425: ABZR86_RS08425 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 1,879,246 to 1,880,697
_RS08425
ABZR86_RS08430: ABZR86_RS08430 - 2-methylaconitate cis-trans isomerase PrpF, at 1,880,797 to 1,881,996
_RS08430
ABZR86_RS08435: ABZR86_RS08435 - Fe/S-dependent 2-methylisocitrate dehydratase AcnD, at 1,881,999 to 1,884,608
_RS08435
Position (kb)
1880
1881
1882 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1879.830 kb on - strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.862 kb on + strand, within ABZR86_RS08425 at 1879.863 kb on - strand, within ABZR86_RS08425 at 1879.863 kb on - strand, within ABZR86_RS08425 at 1879.863 kb on - strand, within ABZR86_RS08425 at 1879.916 kb on + strand, within ABZR86_RS08425 at 1879.916 kb on + strand, within ABZR86_RS08425 at 1879.917 kb on - strand, within ABZR86_RS08425 at 1879.917 kb on - strand, within ABZR86_RS08425 at 1879.919 kb on + strand, within ABZR86_RS08425 at 1879.919 kb on + strand, within ABZR86_RS08425 at 1879.919 kb on + strand, within ABZR86_RS08425 at 1879.919 kb on + strand, within ABZR86_RS08425 at 1880.220 kb on - strand, within ABZR86_RS08425 at 1880.316 kb on - strand, within ABZR86_RS08425 at 1880.316 kb on - strand, within ABZR86_RS08425 at 1880.576 kb on + strand at 1880.576 kb on + strand at 1880.577 kb on - strand at 1880.577 kb on - strand at 1880.592 kb on - strand at 1880.592 kb on - strand at 1880.592 kb on - strand at 1880.592 kb on - strand at 1880.592 kb on - strand at 1880.627 kb on + strand at 1880.627 kb on + strand at 1880.627 kb on + strand at 1880.627 kb on + strand at 1880.628 kb on - strand at 1880.628 kb on - strand at 1880.628 kb on - strand at 1880.628 kb on - strand at 1880.637 kb on + strand at 1880.691 kb on + strand at 1881.024 kb on + strand, within ABZR86_RS08430 at 1881.186 kb on + strand, within ABZR86_RS08430 at 1881.186 kb on + strand, within ABZR86_RS08430 at 1881.290 kb on + strand, within ABZR86_RS08430 at 1881.726 kb on - strand, within ABZR86_RS08430 at 1881.944 kb on + strand at 1881.945 kb on - strand at 1881.945 kb on - strand at 1882.063 kb on + strand at 1882.370 kb on - strand, within ABZR86_RS08435 at 1882.414 kb on + strand, within ABZR86_RS08435 at 1882.415 kb on - strand, within ABZR86_RS08435 at 1882.415 kb on - strand, within ABZR86_RS08435 at 1882.415 kb on - strand, within ABZR86_RS08435 at 1882.415 kb on - strand, within ABZR86_RS08435 at 1882.579 kb on + strand, within ABZR86_RS08435 at 1882.621 kb on + strand, within ABZR86_RS08435 at 1882.754 kb on - strand, within ABZR86_RS08435 at 1882.771 kb on + strand, within ABZR86_RS08435 at 1882.771 kb on + strand, within ABZR86_RS08435 at 1882.771 kb on + strand, within ABZR86_RS08435 at 1882.772 kb on - strand, within ABZR86_RS08435 at 1882.849 kb on + strand, within ABZR86_RS08435 at 1882.850 kb on - strand, within ABZR86_RS08435
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 1,879,830 - ABZR86_RS08425 0.40 -0.5 1,879,862 + ABZR86_RS08425 0.42 +0.2 1,879,862 + ABZR86_RS08425 0.42 -1.7 1,879,862 + ABZR86_RS08425 0.42 -0.6 1,879,862 + ABZR86_RS08425 0.42 +0.8 1,879,862 + ABZR86_RS08425 0.42 +0.8 1,879,862 + ABZR86_RS08425 0.42 +0.2 1,879,862 + ABZR86_RS08425 0.42 +0.2 1,879,863 - ABZR86_RS08425 0.42 +1.5 1,879,863 - ABZR86_RS08425 0.42 -0.2 1,879,863 - ABZR86_RS08425 0.42 -0.1 1,879,916 + ABZR86_RS08425 0.46 -1.5 1,879,916 + ABZR86_RS08425 0.46 +0.3 1,879,917 - ABZR86_RS08425 0.46 +0.5 1,879,917 - ABZR86_RS08425 0.46 -1.2 1,879,919 + ABZR86_RS08425 0.46 -1.2 1,879,919 + ABZR86_RS08425 0.46 +0.2 1,879,919 + ABZR86_RS08425 0.46 +0.6 1,879,919 + ABZR86_RS08425 0.46 +0.5 1,880,220 - ABZR86_RS08425 0.67 -0.0 1,880,316 - ABZR86_RS08425 0.74 -1.5 1,880,316 - ABZR86_RS08425 0.74 -0.5 1,880,576 + +0.1 1,880,576 + +0.0 1,880,577 - +1.1 1,880,577 - +0.9 1,880,592 - +0.8 1,880,592 - +0.4 1,880,592 - -1.0 1,880,592 - +0.3 1,880,592 - +0.8 1,880,627 + +1.1 1,880,627 + -0.3 1,880,627 + -1.5 1,880,627 + -0.3 1,880,628 - -2.0 1,880,628 - +0.2 1,880,628 - -0.8 1,880,628 - +1.5 1,880,637 + -0.4 1,880,691 + -0.7 1,881,024 + ABZR86_RS08430 0.19 +0.0 1,881,186 + ABZR86_RS08430 0.32 -0.9 1,881,186 + ABZR86_RS08430 0.32 +2.5 1,881,290 + ABZR86_RS08430 0.41 +2.7 1,881,726 - ABZR86_RS08430 0.77 +0.4 1,881,944 + -2.2 1,881,945 - -2.4 1,881,945 - +0.0 1,882,063 + -0.2 1,882,370 - ABZR86_RS08435 0.14 +0.8 1,882,414 + ABZR86_RS08435 0.16 +1.4 1,882,415 - ABZR86_RS08435 0.16 -0.7 1,882,415 - ABZR86_RS08435 0.16 -0.2 1,882,415 - ABZR86_RS08435 0.16 +0.2 1,882,415 - ABZR86_RS08435 0.16 +0.2 1,882,579 + ABZR86_RS08435 0.22 +0.8 1,882,621 + ABZR86_RS08435 0.24 -0.2 1,882,754 - ABZR86_RS08435 0.29 +0.8 1,882,771 + ABZR86_RS08435 0.30 -0.6 1,882,771 + ABZR86_RS08435 0.30 -2.4 1,882,771 + ABZR86_RS08435 0.30 -0.1 1,882,772 - ABZR86_RS08435 0.30 +0.2 1,882,849 + ABZR86_RS08435 0.33 +1.4 1,882,850 - ABZR86_RS08435 0.33 -1.0
Or see this region's nucleotide sequence