Strain Fitness in Pseudomonas sp. RS175 around PFR28_04727

Experiment: 5-Aminovaleric carbon 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Aminovaleric carbon 10 mM
5,380,522	-		PFR28_04725	0.61	-1.2
5,380,522	-		PFR28_04725	0.61	-0.0
5,380,522	-		PFR28_04725	0.61	-0.1
5,380,522	-		PFR28_04725	0.61	-0.1
5,380,524	+		PFR28_04725	0.61	-1.2
5,380,524	+		PFR28_04725	0.61	+0.1
5,380,524	+		PFR28_04725	0.61	+2.6
5,380,525	-		PFR28_04725	0.61	+0.0
5,380,525	-		PFR28_04725	0.61	+0.0
5,380,525	-		PFR28_04725	0.61	+0.2
5,380,525	-		PFR28_04725	0.61	-1.3
5,380,525	-		PFR28_04725	0.61	+0.4
5,380,525	-		PFR28_04725	0.61	-0.3
5,380,551	+		PFR28_04725	0.63	+0.2
5,380,561	+		PFR28_04725	0.64	-0.3
5,380,690	+		PFR28_04725	0.76	+0.2
5,380,690	+		PFR28_04725	0.76	+0.1
5,380,691	-		PFR28_04725	0.76	+0.4
5,380,691	-		PFR28_04725	0.76	+0.3
5,380,815	+		PFR28_04725	0.87	+0.3
5,380,816	-		PFR28_04725	0.87	+1.0
5,380,870	+				-0.7
5,380,870	+				-0.0
5,380,870	+				+0.5
5,380,870	+				-1.2
5,380,871	-				-0.7
5,380,871	-				-1.9
5,380,871	-				-2.4
5,380,871	-				+0.2
5,380,871	-				+0.3
5,380,986	-				+0.5
5,380,986	-				-0.8
5,380,986	-				-0.3
5,380,992	+				-1.0
5,380,992	+				+1.5
5,380,992	+				-2.3
5,380,992	+				+0.5
5,380,993	-				+1.8
5,380,993	-				+0.7
5,381,125	+				-0.1
5,381,295	+				-0.4
5,381,295	+				+0.2
5,381,296	-				+0.6
5,381,325	+				-0.3
5,381,326	-				+1.2
5,381,343	-				+0.2
5,381,399	+				-2.4
5,381,400	-				+0.4
5,381,412	+				-0.4
5,381,493	+		PFR28_04727	0.12	-1.7
5,381,493	+		PFR28_04727	0.12	-4.2
5,381,493	+		PFR28_04727	0.12	-3.1
5,381,493	+		PFR28_04727	0.12	+0.0
5,381,493	+		PFR28_04727	0.12	-0.4
5,381,493	+		PFR28_04727	0.12	-2.7
5,381,493	+		PFR28_04727	0.12	-3.5
5,381,493	+		PFR28_04727	0.12	-4.2
5,381,494	-		PFR28_04727	0.12	+0.6
5,381,494	-		PFR28_04727	0.12	-2.1
5,381,494	-		PFR28_04727	0.12	-3.8
5,381,494	-		PFR28_04727	0.12	-3.5
5,381,494	-		PFR28_04727	0.12	-1.7
5,381,494	-		PFR28_04727	0.12	-2.8
5,381,494	-		PFR28_04727	0.12	-1.0
5,381,494	-		PFR28_04727	0.12	-4.0
5,381,494	-		PFR28_04727	0.12	-2.3
5,381,496	+		PFR28_04727	0.13	-1.6
5,381,496	+		PFR28_04727	0.13	-4.2
5,381,496	+		PFR28_04727	0.13	-2.9
5,381,497	-		PFR28_04727	0.13	-2.0
5,381,564	+		PFR28_04727	0.20	-2.3
5,381,564	+		PFR28_04727	0.20	-1.9
5,381,564	+		PFR28_04727	0.20	-4.1
5,381,564	+		PFR28_04727	0.20	-2.9
5,381,564	+		PFR28_04727	0.20	-4.7
5,381,565	-		PFR28_04727	0.20	-1.5
5,381,565	-		PFR28_04727	0.20	-2.0
5,381,565	-		PFR28_04727	0.20	-2.4
5,381,630	+		PFR28_04727	0.27	-3.6
5,381,630	+		PFR28_04727	0.27	-1.9
5,381,630	+		PFR28_04727	0.27	-2.2
5,381,630	+		PFR28_04727	0.27	-3.5
5,381,630	+		PFR28_04727	0.27	-1.6
5,381,631	-		PFR28_04727	0.27	-3.8
5,381,631	-		PFR28_04727	0.27	-1.6
5,381,631	-		PFR28_04727	0.27	-4.0
5,381,631	-		PFR28_04727	0.27	-3.5
5,381,631	-		PFR28_04727	0.27	-3.8
5,381,637	+		PFR28_04727	0.28	-4.0
5,381,704	-		PFR28_04727	0.35	-3.4
5,381,704	-		PFR28_04727	0.35	-3.5
5,381,859	+		PFR28_04727	0.52	-3.6
5,381,859	+		PFR28_04727	0.52	-4.8
5,381,859	+		PFR28_04727	0.52	-1.9
5,381,859	+		PFR28_04727	0.52	-5.7
5,381,859	+		PFR28_04727	0.52	-3.2
5,381,859	+		PFR28_04727	0.52	-3.3
5,381,859	+		PFR28_04727	0.52	-2.9
5,381,860	-		PFR28_04727	0.52	-3.5
5,381,860	-		PFR28_04727	0.52	-4.3
5,381,860	-		PFR28_04727	0.52	-3.2
5,381,860	-		PFR28_04727	0.52	-3.5
5,381,860	-		PFR28_04727	0.52	-2.2
5,381,860	-		PFR28_04727	0.52	-3.9
5,381,969	+		PFR28_04727	0.64	-0.2
5,381,969	+		PFR28_04727	0.64	-1.6
5,381,969	+		PFR28_04727	0.64	-2.0
5,381,996	+		PFR28_04727	0.67	-1.0
5,382,011	+		PFR28_04727	0.69	-3.3
5,382,011	+		PFR28_04727	0.69	-2.4
5,382,011	+		PFR28_04727	0.69	-1.4
5,382,011	+		PFR28_04727	0.69	-1.9
5,382,012	-		PFR28_04727	0.69	-4.2
5,382,089	-		PFR28_04727	0.77	-1.2
5,382,090	+		PFR28_04727	0.77	-2.7
5,382,090	+		PFR28_04727	0.77	-3.9
5,382,091	-		PFR28_04727	0.78	-3.9
5,382,097	+		PFR28_04727	0.78	-4.7
5,382,185	+		PFR28_04727	0.88	-2.5
5,382,185	+		PFR28_04727	0.88	-2.3
5,382,185	+		PFR28_04727	0.88	-2.1
5,382,185	+		PFR28_04727	0.88	-3.4
5,382,185	+		PFR28_04727	0.88	-4.0
5,382,185	+		PFR28_04727	0.88	-3.2
5,382,185	+		PFR28_04727	0.88	-4.0
5,382,185	+		PFR28_04727	0.88	-2.9
5,382,185	+		PFR28_04727	0.88	-4.0
5,382,185	+		PFR28_04727	0.88	-4.3
5,382,186	-		PFR28_04727	0.88	-2.7
5,382,186	-		PFR28_04727	0.88	-2.2
5,382,186	-		PFR28_04727	0.88	-3.9
5,382,186	-		PFR28_04727	0.88	-4.4
5,382,186	-		PFR28_04727	0.88	-2.7
5,382,186	-		PFR28_04727	0.88	-3.7
5,382,186	-		PFR28_04727	0.88	-3.7
5,382,186	-		PFR28_04727	0.88	-4.4
5,382,199	+		PFR28_04727	0.89	-3.9
5,382,295	+				-3.7
5,382,296	-				-0.7
5,382,297	+				-3.7
5,382,297	+				-3.8
5,382,297	+				-1.6
5,382,297	+				-1.7
5,382,297	+				-2.5
5,382,297	+				-2.8
5,382,297	+				-3.6
5,382,297	+				-4.3
5,382,298	-				-0.2
5,382,298	-				-1.9
5,382,298	-				-0.2
5,382,298	-				-0.9
5,382,298	-				-0.5
5,382,298	-				-1.9
5,382,323	+				+1.6
5,382,324	-				-2.3
5,382,324	-				+0.7
5,382,324	-				-0.0
5,382,324	-				-0.1
5,382,324	-				-0.2
5,382,324	-				+0.5
5,382,324	-				-1.1
5,382,359	-				-3.2
5,382,408	+				-2.2
5,382,408	+				-3.0
5,382,408	+				-2.9
5,382,408	+				-2.5
5,382,409	-				+0.0
5,382,409	-				-3.6
5,382,668	+		PFR28_04728	0.18	-3.4
5,382,689	+		PFR28_04728	0.20	-4.1
5,382,689	+		PFR28_04728	0.20	-1.6
5,382,689	+		PFR28_04728	0.20	-3.6
5,382,689	+		PFR28_04728	0.20	-2.5
5,382,689	+		PFR28_04728	0.20	-3.2
5,382,690	-		PFR28_04728	0.20	-2.9
5,382,690	-		PFR28_04728	0.20	-2.5
5,382,699	-		PFR28_04728	0.21	-2.5
5,382,699	-		PFR28_04728	0.21	-3.9
5,382,699	-		PFR28_04728	0.21	-1.4
5,382,699	-		PFR28_04728	0.21	-1.6
5,382,699	-		PFR28_04728	0.21	-0.7
5,382,821	+		PFR28_04728	0.31	-3.4
5,382,821	+		PFR28_04728	0.31	-3.9
5,382,821	+		PFR28_04728	0.31	-2.2
5,382,821	+		PFR28_04728	0.31	-1.2
5,382,821	+		PFR28_04728	0.31	-1.6
5,382,821	+		PFR28_04728	0.31	-3.2
5,382,821	+		PFR28_04728	0.31	-1.0
5,382,821	+		PFR28_04728	0.31	-0.4
5,382,821	+		PFR28_04728	0.31	-2.5
5,382,822	-		PFR28_04728	0.31	-2.9
5,382,822	-		PFR28_04728	0.31	-2.2
5,382,822	-		PFR28_04728	0.31	-2.7
5,382,822	-		PFR28_04728	0.31	-2.5
5,382,822	-		PFR28_04728	0.31	-4.6
5,382,822	-		PFR28_04728	0.31	-4.2
5,382,822	-		PFR28_04728	0.31	-3.9
5,382,822	-		PFR28_04728	0.31	-3.1
5,382,822	-		PFR28_04728	0.31	-3.3
5,382,907	+		PFR28_04728	0.38	-2.0
5,382,908	-		PFR28_04728	0.39	-2.9
5,382,908	-		PFR28_04728	0.39	-2.8
5,382,908	-		PFR28_04728	0.39	-3.4
5,382,908	-		PFR28_04728	0.39	-3.6
5,382,936	-		PFR28_04728	0.41	-3.3
5,382,964	+		PFR28_04728	0.43	-3.3
5,382,964	+		PFR28_04728	0.43	-2.8
5,382,964	+		PFR28_04728	0.43	-3.0
5,382,965	-		PFR28_04728	0.43	-2.9
5,382,965	-		PFR28_04728	0.43	-2.0
5,382,987	+		PFR28_04728	0.45	-3.6
5,382,987	+		PFR28_04728	0.45	-1.6
5,382,987	+		PFR28_04728	0.45	-2.6
5,382,987	+		PFR28_04728	0.45	-0.7
5,382,988	-		PFR28_04728	0.45	-2.5
5,382,988	-		PFR28_04728	0.45	-3.6
5,382,988	-		PFR28_04728	0.45	-4.0
5,383,126	+		PFR28_04728	0.57	-1.2
5,383,131	+		PFR28_04728	0.57	-2.4
5,383,131	+		PFR28_04728	0.57	-2.6
5,383,131	+		PFR28_04728	0.57	-1.5
5,383,131	+		PFR28_04728	0.57	-3.2
5,383,131	+		PFR28_04728	0.57	-2.4
5,383,131	+		PFR28_04728	0.57	-1.9
5,383,131	+		PFR28_04728	0.57	-2.7
5,383,131	+		PFR28_04728	0.57	-2.6
5,383,131	+		PFR28_04728	0.57	-2.1
5,383,132	-		PFR28_04728	0.58	-3.4
5,383,132	-		PFR28_04728	0.58	-4.0
5,383,132	-		PFR28_04728	0.58	-2.8
5,383,132	-		PFR28_04728	0.58	-3.4
5,383,132	-		PFR28_04728	0.58	-4.4
5,383,268	+		PFR28_04728	0.69	-2.2