Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07720

Experiment: L-tyrosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07710 and ABID97_RS07715 overlap by 4 nucleotidesABID97_RS07715 and ABID97_RS07720 are separated by 7 nucleotidesABID97_RS07720 and ABID97_RS07725 are separated by 61 nucleotides ABID97_RS07710: ABID97_RS07710 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,624,826 to 1,625,794 _RS07710 ABID97_RS07715: ABID97_RS07715 - threonine/serine dehydratase, at 1,625,791 to 1,626,753 _RS07715 ABID97_RS07720: ABID97_RS07720 - VOC family protein, at 1,626,761 to 1,627,162 _RS07720 ABID97_RS07725: ABID97_RS07725 - serine--tRNA ligase, at 1,627,224 to 1,628,556 _RS07725 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -3 -2 -1 0 1at 1625.826 kb on - strandat 1626.190 kb on + strand, within ABID97_RS07715at 1626.256 kb on + strand, within ABID97_RS07715at 1626.256 kb on + strand, within ABID97_RS07715at 1626.257 kb on - strand, within ABID97_RS07715at 1626.362 kb on + strand, within ABID97_RS07715at 1626.550 kb on + strand, within ABID97_RS07715at 1626.550 kb on + strand, within ABID97_RS07715at 1626.550 kb on + strand, within ABID97_RS07715at 1626.550 kb on + strand, within ABID97_RS07715at 1626.550 kb on + strand, within ABID97_RS07715at 1626.551 kb on - strand, within ABID97_RS07715at 1626.551 kb on - strand, within ABID97_RS07715at 1626.679 kb on + strandat 1626.680 kb on - strandat 1626.680 kb on - strandat 1626.762 kb on + strandat 1626.763 kb on - strandat 1627.111 kb on - strand, within ABID97_RS07720at 1627.111 kb on - strand, within ABID97_RS07720at 1627.152 kb on + strandat 1627.153 kb on - strandat 1627.153 kb on - strandat 1627.202 kb on + strandat 1627.202 kb on + strandat 1627.202 kb on + strandat 1627.202 kb on + strandat 1627.203 kb on - strandat 1627.212 kb on + strandat 1627.213 kb on - strandat 1627.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (C)
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1,625,826 - -0.2
1,626,190 + ABID97_RS07715 0.41 +0.3
1,626,256 + ABID97_RS07715 0.48 -1.1
1,626,256 + ABID97_RS07715 0.48 +1.1
1,626,257 - ABID97_RS07715 0.48 -0.3
1,626,362 + ABID97_RS07715 0.59 +0.4
1,626,550 + ABID97_RS07715 0.79 -0.2
1,626,550 + ABID97_RS07715 0.79 +0.0
1,626,550 + ABID97_RS07715 0.79 +0.1
1,626,550 + ABID97_RS07715 0.79 -0.5
1,626,550 + ABID97_RS07715 0.79 -0.3
1,626,551 - ABID97_RS07715 0.79 -0.5
1,626,551 - ABID97_RS07715 0.79 -1.7
1,626,679 + +0.3
1,626,680 - -1.1
1,626,680 - -1.2
1,626,762 + +0.1
1,626,763 - -0.3
1,627,111 - ABID97_RS07720 0.87 -1.9
1,627,111 - ABID97_RS07720 0.87 -1.7
1,627,152 + +0.4
1,627,153 - +0.8
1,627,153 - +0.0
1,627,202 + +0.4
1,627,202 + -0.5
1,627,202 + -0.2
1,627,202 + +0.4
1,627,203 - -0.1
1,627,212 + -0.4
1,627,213 - +0.5
1,627,213 - -3.5

Or see this region's nucleotide sequence