Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13835

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13825 and ABID97_RS13830 are separated by 10 nucleotidesABID97_RS13830 and ABID97_RS13835 are separated by 107 nucleotidesABID97_RS13835 and ABID97_RS13840 are separated by 2 nucleotidesABID97_RS13840 and ABID97_RS13845 are separated by 2 nucleotides ABID97_RS13825: ABID97_RS13825 - hypothetical protein, at 2,869,582 to 2,869,995 _RS13825 ABID97_RS13830: ABID97_RS13830 - hypothetical protein, at 2,870,006 to 2,870,791 _RS13830 ABID97_RS13835: ABID97_RS13835 - phage tail tape measure protein, at 2,870,899 to 2,873,619 _RS13835 ABID97_RS13840: ABID97_RS13840 - hypothetical protein, at 2,873,622 to 2,874,017 _RS13840 ABID97_RS13845: ABID97_RS13845 - hypothetical protein, at 2,874,020 to 2,877,601 _RS13845 Position (kb) 2870 2871 2872 2873 2874Strain fitness (log2 ratio) -2 -1 0 1at 2870.258 kb on + strand, within ABID97_RS13830at 2870.259 kb on - strand, within ABID97_RS13830at 2870.259 kb on - strand, within ABID97_RS13830at 2870.439 kb on - strand, within ABID97_RS13830at 2870.556 kb on - strand, within ABID97_RS13830at 2870.645 kb on + strand, within ABID97_RS13830at 2871.302 kb on - strand, within ABID97_RS13835at 2871.427 kb on + strand, within ABID97_RS13835at 2871.428 kb on - strand, within ABID97_RS13835at 2873.369 kb on - strandat 2873.516 kb on - strandat 2873.617 kb on + strandat 2873.617 kb on + strandat 2873.617 kb on + strandat 2873.618 kb on - strandat 2873.618 kb on - strandat 2873.618 kb on - strandat 2873.980 kb on - strandat 2874.534 kb on - strand, within ABID97_RS13845at 2874.534 kb on - strand, within ABID97_RS13845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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2,870,258 + ABID97_RS13830 0.32 -1.2
2,870,259 - ABID97_RS13830 0.32 -1.2
2,870,259 - ABID97_RS13830 0.32 -0.3
2,870,439 - ABID97_RS13830 0.55 -0.4
2,870,556 - ABID97_RS13830 0.70 -0.6
2,870,645 + ABID97_RS13830 0.81 -1.6
2,871,302 - ABID97_RS13835 0.15 -0.2
2,871,427 + ABID97_RS13835 0.19 -0.7
2,871,428 - ABID97_RS13835 0.19 -0.7
2,873,369 - -0.5
2,873,516 - -0.6
2,873,617 + -2.1
2,873,617 + -2.0
2,873,617 + -0.6
2,873,618 - -0.9
2,873,618 - -1.2
2,873,618 - -1.5
2,873,980 - -0.6
2,874,534 - ABID97_RS13845 0.14 +0.5
2,874,534 - ABID97_RS13845 0.14 +0.2

Or see this region's nucleotide sequence