Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12740

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12735 and ABID97_RS12740 overlap by 17 nucleotidesABID97_RS12740 and ABID97_RS12745 overlap by 4 nucleotidesABID97_RS12745 and ABID97_RS12750 overlap by 4 nucleotides ABID97_RS12735: ABID97_RS12735 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,641,024 to 2,642,175 _RS12735 ABID97_RS12740: ABID97_RS12740 - MxaL protein, at 2,642,159 to 2,643,154 _RS12740 ABID97_RS12745: ABID97_RS12745 - MxaK protein, at 2,643,151 to 2,643,702 _RS12745 ABID97_RS12750: ABID97_RS12750 - vWA domain-containing protein, at 2,643,699 to 2,644,700 _RS12750 Position (kb) 2642 2643 2644Strain fitness (log2 ratio) -3 -2 -1 0 1at 2641.285 kb on + strand, within ABID97_RS12735at 2641.286 kb on - strand, within ABID97_RS12735at 2641.586 kb on - strand, within ABID97_RS12735at 2641.588 kb on + strand, within ABID97_RS12735at 2641.588 kb on + strand, within ABID97_RS12735at 2641.984 kb on + strand, within ABID97_RS12735at 2641.985 kb on - strand, within ABID97_RS12735at 2642.391 kb on + strand, within ABID97_RS12740at 2642.490 kb on - strand, within ABID97_RS12740at 2643.275 kb on + strand, within ABID97_RS12745at 2643.276 kb on - strand, within ABID97_RS12745at 2643.778 kb on - strandat 2644.015 kb on + strand, within ABID97_RS12750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,641,285 + ABID97_RS12735 0.23 -2.8
2,641,286 - ABID97_RS12735 0.23 +0.9
2,641,586 - ABID97_RS12735 0.49 -0.5
2,641,588 + ABID97_RS12735 0.49 -0.5
2,641,588 + ABID97_RS12735 0.49 -0.5
2,641,984 + ABID97_RS12735 0.83 +0.1
2,641,985 - ABID97_RS12735 0.83 -0.3
2,642,391 + ABID97_RS12740 0.23 -0.2
2,642,490 - ABID97_RS12740 0.33 -0.0
2,643,275 + ABID97_RS12745 0.22 +0.1
2,643,276 - ABID97_RS12745 0.23 +0.6
2,643,778 - -0.1
2,644,015 + ABID97_RS12750 0.32 +0.4

Or see this region's nucleotide sequence