Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24765 and ABID97_RS24770 are separated by 25 nucleotides ABID97_RS24770 and ABID97_RS24775 overlap by 4 nucleotides ABID97_RS24775 and ABID97_RS24780 overlap by 4 nucleotides
ABID97_RS24765: ABID97_RS24765 - ABC transporter permease, at 5,133,631 to 5,134,626
_RS24765
ABID97_RS24770: ABID97_RS24770 - LacI family DNA-binding transcriptional regulator, at 5,134,652 to 5,135,743
_RS24770
ABID97_RS24775: ABID97_RS24775 - ribokinase, at 5,135,740 to 5,136,708
_RS24775
ABID97_RS24780: ABID97_RS24780 - D-ribose pyranase, at 5,136,705 to 5,137,097
_RS24780
Position (kb) 5134
5135
5136 Strain fitness (log2 ratio) -2
-1
0
1 at 5133.703 kb on + strand at 5133.703 kb on + strand at 5133.704 kb on - strand at 5133.704 kb on - strand at 5133.704 kb on - strand at 5133.764 kb on - strand, within ABID97_RS24765 at 5134.075 kb on + strand, within ABID97_RS24765 at 5134.102 kb on + strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.149 kb on + strand, within ABID97_RS24765 at 5134.784 kb on + strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.869 kb on - strand, within ABID97_RS24770 at 5134.970 kb on + strand, within ABID97_RS24770 at 5134.970 kb on + strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770 at 5136.675 kb on + strand at 5136.713 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,133,703 + -0.2 5,133,703 + +1.0 5,133,704 - +0.4 5,133,704 - -0.1 5,133,704 - +0.3 5,133,764 - ABID97_RS24765 0.13 -1.5 5,134,075 + ABID97_RS24765 0.45 -1.3 5,134,102 + ABID97_RS24765 0.47 +1.6 5,134,103 - ABID97_RS24765 0.47 +1.6 5,134,103 - ABID97_RS24765 0.47 -0.5 5,134,103 - ABID97_RS24765 0.47 -1.5 5,134,149 + ABID97_RS24765 0.52 +0.5 5,134,784 + ABID97_RS24770 0.12 -1.1 5,134,785 - ABID97_RS24770 0.12 -2.0 5,134,785 - ABID97_RS24770 0.12 -1.1 5,134,785 - ABID97_RS24770 0.12 +0.8 5,134,785 - ABID97_RS24770 0.12 -1.8 5,134,868 + ABID97_RS24770 0.20 -2.5 5,134,868 + ABID97_RS24770 0.20 -2.7 5,134,868 + ABID97_RS24770 0.20 -1.0 5,134,869 - ABID97_RS24770 0.20 -0.8 5,134,970 + ABID97_RS24770 0.29 -1.1 5,134,970 + ABID97_RS24770 0.29 -0.6 5,135,468 - ABID97_RS24770 0.75 -1.1 5,135,468 - ABID97_RS24770 0.75 -0.8 5,135,468 - ABID97_RS24770 0.75 -1.9 5,136,675 + -1.6 5,136,713 + +0.3
Or see this region's nucleotide sequence